ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 i... 42 1.7
2gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
3gb|AC092749.1| Genomic sequence for Oryza sativa (japonica culti... 42 1.7
4dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.7
5gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete... 42 1.7
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.7
7gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 42 1.7
8gb|U23512.1| Caenorhabditis elegans cosmid M01G4, complete sequence 40 6.9
9gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, com... 40 6.9
10gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome... 40 6.9
11gb|U00032.2| Caenorhabditis elegans cosmid F37A4, complete sequence 40 6.9
12ref|XM_781768.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 6.9
13gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome... 40 6.9
14dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 6.9
15gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21... 40 6.9
16dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 40 6.9
17gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, co... 40 6.9
18gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, com... 40 6.9
19gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, c... 40 6.9
20gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid p... 40 6.9
21emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chro... 40 6.9

>emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 in linkage group 7,
             complete sequence
          Length = 50326

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 86    agaagaaaaggtcacatgcat 106
             |||||||||||||||||||||
Sbjct: 20236 agaagaaaaggtcacatgcat 20256



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>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13,
              complete sequence
          Length = 146538

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 101    atgcatcctaaattcctaatc 121
              |||||||||||||||||||||
Sbjct: 142451 atgcatcctaaattcctaatc 142471



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>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
             Nipponbare clone OSJNBb0023M11, from chromosome 10,
             complete sequence
          Length = 138668

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   atgcatcctaaattcctaatc 121
             |||||||||||||||||||||
Sbjct: 45913 atgcatcctaaattcctaatc 45933



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 101      atgcatcctaaattcctaatc 121
                |||||||||||||||||||||
Sbjct: 10125692 atgcatcctaaattcctaatc 10125712



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>gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete sequence
          Length = 162030

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 353   ttcctcatcagtaaatctagc 373
             |||||||||||||||||||||
Sbjct: 58944 ttcctcatcagtaaatctagc 58964



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 101      atgcatcctaaattcctaatc 121
                |||||||||||||||||||||
Sbjct: 10131731 atgcatcctaaattcctaatc 10131751



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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 353    ttcctcatcagtaaatctagc 373
              |||||||||||||||||||||
Sbjct: 514905 ttcctcatcagtaaatctagc 514925



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>gb|U23512.1| Caenorhabditis elegans cosmid M01G4, complete sequence
          Length = 38415

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    atgtaaaaatgaagaagaaa 93
             ||||||||||||||||||||
Sbjct: 33172 atgtaaaaatgaagaagaaa 33191



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>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence
          Length = 280763

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   ttctccatccagtaatgact 504
             ||||||||||||||||||||
Sbjct: 75050 ttctccatccagtaatgact 75069



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>gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome 7, complete
            sequence
          Length = 155123

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 485  ttctccatccagtaatgact 504
            ||||||||||||||||||||
Sbjct: 6817 ttctccatccagtaatgact 6798



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>gb|U00032.2| Caenorhabditis elegans cosmid F37A4, complete sequence
          Length = 50335

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 74   atgtaaaaatgaagaagaaa 93
            ||||||||||||||||||||
Sbjct: 6457 atgtaaaaatgaagaagaaa 6476



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>ref|XM_781768.1| PREDICTED: Strongylocentrotus purpuratus similar to Rho-associated
           protein kinase 2 (Rho-associated, coiled-coil containing
           protein kinase 2) (p164 ROCK-2) (LOC581782), partial
           mRNA
          Length = 645

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 207 tttgccaagtccttctccag 226
           ||||||||||||||||||||
Sbjct: 428 tttgccaagtccttctccag 409



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>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence
          Length = 248060

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    ctattaaccagaatcaactc 322
              ||||||||||||||||||||
Sbjct: 143055 ctattaaccagaatcaactc 143036



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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     aaattcctaatcctagtcct 129
               ||||||||||||||||||||
Sbjct: 4030122 aaattcctaatcctagtcct 4030141



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>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence
          Length = 141874

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   tgacacctgacctcagcttcctct 275
             ||||||||| ||||||||||||||
Sbjct: 26398 tgacacctgccctcagcttcctct 26421



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>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003
          Length = 4170692

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 80     aaatgaagaagaaaaggtca 99
              ||||||||||||||||||||
Sbjct: 561734 aaatgaagaagaaaaggtca 561715



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>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence
          Length = 221086

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     aaaatgaagaagaaaaggtc 98
              ||||||||||||||||||||
Sbjct: 148497 aaaatgaagaagaaaaggtc 148516



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>gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, complete sequence
          Length = 174287

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 146   catgtgaagccacctcagttcaatcacttcct 177
             ||||||||||||||| | |||| |||||||||
Sbjct: 65974 catgtgaagccacctgatttcattcacttcct 66005



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>gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, complete sequence
          Length = 106659

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    aaaatgaagaagaaaaggtc 98
             ||||||||||||||||||||
Sbjct: 44262 aaaatgaagaagaaaaggtc 44243



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>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete sequence
          Length = 192000

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     taaaaatgaagaagaaaagg 96
              ||||||||||||||||||||
Sbjct: 148588 taaaaatgaagaagaaaagg 148569



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>emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chromosome 2, complete
              sequence
          Length = 204871

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     tgtaaaaatgaagaagaaaa 94
              ||||||||||||||||||||
Sbjct: 159398 tgtaaaaatgaagaagaaaa 159417


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,287,014
Number of Sequences: 3902068
Number of extensions: 5287014
Number of successful extensions: 100623
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100511
Number of HSP's gapped (non-prelim): 112
length of query: 511
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 488
effective length of database: 17,143,297,704
effective search space: 8365929279552
effective search space used: 8365929279552
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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