Clone Name | rbart33c10 |
---|---|
Clone Library Name | barley_pub |
>emb|CR388027.14| Zebrafish DNA sequence from clone DKEY-181O16 in linkage group 7, complete sequence Length = 50326 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 86 agaagaaaaggtcacatgcat 106 ||||||||||||||||||||| Sbjct: 20236 agaagaaaaggtcacatgcat 20256
>gb|AC123594.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0078C13, complete sequence Length = 146538 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 atgcatcctaaattcctaatc 121 ||||||||||||||||||||| Sbjct: 142451 atgcatcctaaattcctaatc 142471
>gb|AC092749.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBb0023M11, from chromosome 10, complete sequence Length = 138668 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 atgcatcctaaattcctaatc 121 ||||||||||||||||||||| Sbjct: 45913 atgcatcctaaattcctaatc 45933
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 atgcatcctaaattcctaatc 121 ||||||||||||||||||||| Sbjct: 10125692 atgcatcctaaattcctaatc 10125712
>gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete sequence Length = 162030 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 353 ttcctcatcagtaaatctagc 373 ||||||||||||||||||||| Sbjct: 58944 ttcctcatcagtaaatctagc 58964
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 101 atgcatcctaaattcctaatc 121 ||||||||||||||||||||| Sbjct: 10131731 atgcatcctaaattcctaatc 10131751
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold Length = 1833844 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 353 ttcctcatcagtaaatctagc 373 ||||||||||||||||||||| Sbjct: 514905 ttcctcatcagtaaatctagc 514925
>gb|U23512.1| Caenorhabditis elegans cosmid M01G4, complete sequence Length = 38415 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 atgtaaaaatgaagaagaaa 93 |||||||||||||||||||| Sbjct: 33172 atgtaaaaatgaagaagaaa 33191
>gb|AC100208.16| Mus musculus chromosome 7, clone RP23-59J14, complete sequence Length = 280763 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 ttctccatccagtaatgact 504 |||||||||||||||||||| Sbjct: 75050 ttctccatccagtaatgact 75069
>gb|AC129300.3| Mus musculus BAC clone RP24-427A8 from chromosome 7, complete sequence Length = 155123 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 ttctccatccagtaatgact 504 |||||||||||||||||||| Sbjct: 6817 ttctccatccagtaatgact 6798
>gb|U00032.2| Caenorhabditis elegans cosmid F37A4, complete sequence Length = 50335 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 atgtaaaaatgaagaagaaa 93 |||||||||||||||||||| Sbjct: 6457 atgtaaaaatgaagaagaaa 6476
>ref|XM_781768.1| PREDICTED: Strongylocentrotus purpuratus similar to Rho-associated protein kinase 2 (Rho-associated, coiled-coil containing protein kinase 2) (p164 ROCK-2) (LOC581782), partial mRNA Length = 645 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 tttgccaagtccttctccag 226 |||||||||||||||||||| Sbjct: 428 tttgccaagtccttctccag 409
>gb|AC163354.3| Mus musculus BAC clone RP23-49E21 from chromosome 12, complete sequence Length = 248060 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 303 ctattaaccagaatcaactc 322 |||||||||||||||||||| Sbjct: 143055 ctattaaccagaatcaactc 143036
>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome Length = 5727534 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 110 aaattcctaatcctagtcct 129 |||||||||||||||||||| Sbjct: 4030122 aaattcctaatcctagtcct 4030141
>gb|AC144374.5| Gallus gallus strain White Leghorn clone xx-37d21, complete sequence Length = 141874 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 252 tgacacctgacctcagcttcctct 275 ||||||||| |||||||||||||| Sbjct: 26398 tgacacctgccctcagcttcctct 26421
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 aaatgaagaagaaaaggtca 99 |||||||||||||||||||| Sbjct: 561734 aaatgaagaagaaaaggtca 561715
>gb|AC090359.6| Homo sapiens chromosome 18, clone RP11-785M10, complete sequence Length = 221086 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 aaaatgaagaagaaaaggtc 98 |||||||||||||||||||| Sbjct: 148497 aaaatgaagaagaaaaggtc 148516
>gb|AC100840.2| Homo sapiens chromosome 15, clone RP11-537K8, complete sequence Length = 174287 Score = 40.1 bits (20), Expect = 6.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 146 catgtgaagccacctcagttcaatcacttcct 177 ||||||||||||||| | |||| ||||||||| Sbjct: 65974 catgtgaagccacctgatttcattcacttcct 66005
>gb|AC091137.23| Homo sapiens chromosome 18, clone RP11-755G16, complete sequence Length = 106659 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 aaaatgaagaagaaaaggtc 98 |||||||||||||||||||| Sbjct: 44262 aaaatgaagaagaaaaggtc 44243
>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete sequence Length = 192000 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 taaaaatgaagaagaaaagg 96 |||||||||||||||||||| Sbjct: 148588 taaaaatgaagaagaaaagg 148569
>emb|AL805948.9| Mouse DNA sequence from clone RP23-18C13 on chromosome 2, complete sequence Length = 204871 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tgtaaaaatgaagaagaaaa 94 |||||||||||||||||||| Sbjct: 159398 tgtaaaaatgaagaagaaaa 159417 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,287,014 Number of Sequences: 3902068 Number of extensions: 5287014 Number of successful extensions: 100623 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 21 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100511 Number of HSP's gapped (non-prelim): 112 length of query: 511 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 488 effective length of database: 17,143,297,704 effective search space: 8365929279552 effective search space used: 8365929279552 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)