ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33c09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472341.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AK101501.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
4emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4,... 82 2e-12
5gb|AF067617.1| Caenorhabditis elegans cosmid T04D1, complete seq... 44 0.45
6ref|NM_059025.2| Caenorhabditis elegans T04D1.4 (helicase) mRNA,... 44 0.45
7dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 44 0.45
8gb|AF440828.1| Streptomyces avermitilis Imp1 (imp1) gene, partia... 44 0.45
9gb|U88178.1| Caenorhabditis elegans cosmid W09C3, complete sequence 42 1.8
10gb|AC130721.3| Mus musculus BAC clone RP24-333B3 from chromosome... 42 1.8
11gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OAB... 42 1.8
12gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complet... 42 1.8
13ref|XM_463851.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.0
14gb|AF178030.3| Homo sapiens chromosome 8 multiple clones map q23... 40 7.0
15gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co... 40 7.0
16gb|AC140193.3| Mus musculus BAC clone RP23-247C12 from chromosom... 40 7.0
17gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, co... 40 7.0
18gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosom... 40 7.0
19gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, comple... 40 7.0
20emb|CR718653.2|CNS0GHGJ Tetraodon nigroviridis full-length cDNA 40 7.0
21gb|AC161500.4| Mus musculus chromosome 7, clone RP23-145H5, comp... 40 7.0
22emb|AL731545.4| Human DNA sequence from clone RP11-431F18 on chr... 40 7.0
23gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 7.0
24gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 7.0
25gb|AY135339.1| Homo sapiens isolate MRPS35P3 mitochondrial ribos... 40 7.0
26gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
27emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 7.0
28gb|AC006484.2| Homo sapiens chromosome 5, clone hRPK.448_K_10, c... 40 7.0
29gb|AC182541.1| Ateles geoffroyi clone UC1-374M20, complete sequence 40 7.0
30gb|AC092228.1|AC092228 Drosophila melanogaster, chromosome 2L, r... 40 7.0
31ref|NG_002895.1| Homo sapiens mitochondrial ribosomal protein S3... 40 7.0
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
33dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
34gb|AC010738.5| Homo sapiens BAC clone RP11-443I9 from 2, complet... 40 7.0
35dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
36gb|AC158669.3| Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer... 40 7.0
37dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
38dbj|AK069550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
39dbj|AK062468.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
40gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete se... 40 7.0
41gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F1... 40 7.0
42gb|AE003643.3| Drosophila melanogaster chromosome 2L, section 52... 40 7.0
43gb|AC153639.4| Mus musculus 6 BAC RP23-124H2 (Roswell Park Cance... 40 7.0
44emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chro... 40 7.0
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.0
46dbj|AP006369.1| Lotus japonicus genomic DNA, chromosome 4, clone... 40 7.0 
>ref|XM_472341.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 807

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 417 cgccctgcaacagctgcgcgtaccgcaggaggtcagggtacggcacgacggcctgctgct 476
           ||||||||| ||||||||||||||||| |||||| |||||||||||||| | ||||||||
Sbjct: 556 cgccctgcagcagctgcgcgtaccgcatgaggtccgggtacggcacgaccgtctgctgct 497

            
Query: 477 g 477
           |
Sbjct: 496 g 496



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                  
Query: 305 cggatgagctgctgtgtcgagaagtcgagtatgtggggcgaccacgaggacgaca 359
           |||||||||||||| ||||||||||||||||| || |||| | ||||||||||||
Sbjct: 668 cggatgagctgctgcgtcgagaagtcgagtatctgcggcgccgacgaggacgaca 614
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                            
Query: 417      cgccctgcaacagctgcgcgtaccgcaggaggtcagggtacggcacgacggcctgctgct 476
                ||||||||| ||||||||||||||||| |||||| |||||||||||||| | ||||||||
Sbjct: 19661776 cgccctgcagcagctgcgcgtaccgcatgaggtccgggtacggcacgaccgtctgctgct 19661717

                 
Query: 477      g 477
                |
Sbjct: 19661716 g 19661716



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                       
Query: 305      cggatgagctgctgtgtcgagaagtcgagtatgtggggcgaccacgaggacgaca 359
                |||||||||||||| ||||||||||||||||| || |||| | ||||||||||||
Sbjct: 19661888 cggatgagctgctgcgtcgagaagtcgagtatctgcggcgccgacgaggacgaca 19661834
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>dbj|AK101501.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044C14, full
            insert sequence
          Length = 1854

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 417  cgccctgcaacagctgcgcgtaccgcaggaggtcagggtacggcacgacggcctgctgct 476
            ||||||||| ||||||||||||||||| |||||| |||||||||||||| | ||||||||
Sbjct: 1050 cgccctgcagcagctgcgcgtaccgcatgaggtccgggtacggcacgaccgtctgctgct 991

             
Query: 477  g 477
            |
Sbjct: 990  g 990



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                   
Query: 305  cggatgagctgctgtgtcgagaagtcgagtatgtggggcgaccacgaggacgaca 359
            |||||||||||||| ||||||||||||||||| || |||| | ||||||||||||
Sbjct: 1162 cggatgagctgctgcgtcgagaagtcgagtatctgcggcgccgacgaggacgaca 1108
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>emb|AL731591.3|OSJN00240 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039C07,
              complete sequence
          Length = 166410

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                          
Query: 417    cgccctgcaacagctgcgcgtaccgcaggaggtcagggtacggcacgacggcctgctgct 476
              ||||||||| ||||||||||||||||| |||||| |||||||||||||| | ||||||||
Sbjct: 112502 cgccctgcagcagctgcgcgtaccgcatgaggtccgggtacggcacgaccgtctgctgct 112443

               
Query: 477    g 477
              |
Sbjct: 112442 g 112442



 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 305    cggatgagctgctgtgtcgagaagtcgagtatgtggggcgaccacgaggacgaca 359
              |||||||||||||| ||||||||||||||||| || |||| | ||||||||||||
Sbjct: 112614 cggatgagctgctgcgtcgagaagtcgagtatctgcggcgccgacgaggacgaca 112560
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>gb|AF067617.1| Caenorhabditis elegans cosmid T04D1, complete sequence
          Length = 28678

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 469   ctgctgctggtgcagcggcggccgca 494
             ||||||||| ||||||||||||||||
Sbjct: 26603 ctgctgctgctgcagcggcggccgca 26578
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>ref|NM_059025.2| Caenorhabditis elegans T04D1.4 (helicase) mRNA, complete cds
          Length = 9397

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 469  ctgctgctggtgcagcggcggccgca 494
            ||||||||| ||||||||||||||||
Sbjct: 1082 ctgctgctgctgcagcggcggccgca 1107
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 248     gacggccccgttgtggctgaac 269
               ||||||||||||||||||||||
Sbjct: 8754539 gacggccccgttgtggctgaac 8754560
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>gb|AF440828.1| Streptomyces avermitilis Imp1 (imp1) gene, partial cds; Imp2 (imp2)
            gene, complete cds; and unknown genes
          Length = 7996

 Score = 44.1 bits (22), Expect = 0.45
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 248  gacggccccgttgtggctgaac 269
            ||||||||||||||||||||||
Sbjct: 2235 gacggccccgttgtggctgaac 2256
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>gb|U88178.1| Caenorhabditis elegans cosmid W09C3, complete sequence
          Length = 23793

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 469 ctgctgctggtgcagcggcggccgc 493
           ||||||||| |||||||||||||||
Sbjct: 25  ctgctgctgctgcagcggcggccgc 1
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>gb|AC130721.3| Mus musculus BAC clone RP24-333B3 from chromosome 6, complete
            sequence
          Length = 149502

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 31   aaagaaatgttcaccagcaaa 51
            |||||||||||||||||||||
Sbjct: 2479 aaagaaatgttcaccagcaaa 2499
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>gb|AC159742.1| Ornithorhynchus anatinus chromosome UNK clone OABb-263A1, complete
             sequence
          Length = 150582

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    gaagaagaaaagaaatgttcaccag 47
             ||||||||||| |||||||||||||
Sbjct: 51211 gaagaagaaaataaatgttcaccag 51187
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>gb|AC149089.4| Mus musculus BAC clone RP23-94H23 from 6, complete sequence
          Length = 189070

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     aaagaaatgttcaccagcaaa 51
              |||||||||||||||||||||
Sbjct: 146689 aaagaaatgttcaccagcaaa 146709
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>ref|XM_463851.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2419

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   aagatcagaagaagaaaaga 35
            ||||||||||||||||||||
Sbjct: 1470 aagatcagaagaagaaaaga 1489
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>gb|AF178030.3| Homo sapiens chromosome 8 multiple clones map q23.3, complete sequence
          Length = 310003

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    gaagaaaagaaatgttcacc 45
             ||||||||||||||||||||
Sbjct: 84870 gaagaaaagaaatgttcacc 84889
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>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete
             genome
          Length = 686194

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 38    tgttcaccagcaaaattaaa 57
             ||||||||||||||||||||
Sbjct: 44442 tgttcaccagcaaaattaaa 44461
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>gb|AC140193.3| Mus musculus BAC clone RP23-247C12 from chromosome 19, complete sequence
          Length = 173527

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 25     agaagaaaagaaatgttcac 44
              ||||||||||||||||||||
Sbjct: 172030 agaagaaaagaaatgttcac 172011
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>gb|AC113011.9| Mus musculus chromosome 16, clone RP23-173D22, complete sequence
          Length = 210962

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     agaagaagaaaagaaatgtt 41
              ||||||||||||||||||||
Sbjct: 155309 agaagaagaaaagaaatgtt 155328
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>gb|AC133503.4| Mus musculus BAC clone RP24-301O19 from chromosome 19, complete sequence
          Length = 161150

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     agaagaaaagaaatgttcac 44
              ||||||||||||||||||||
Sbjct: 149031 agaagaaaagaaatgttcac 149050
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>gb|AC117225.3| Mus musculus BAC clone RP23-366F3 from 19, complete sequence
          Length = 149854

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    agaagaaaagaaatgttcac 44
             ||||||||||||||||||||
Sbjct: 81888 agaagaaaagaaatgttcac 81907
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>emb|CR718653.2|CNS0GHGJ Tetraodon nigroviridis full-length cDNA
          Length = 1009

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 ttgtggctgaacctgatatt 277
           ||||||||||||||||||||
Sbjct: 99  ttgtggctgaacctgatatt 80
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>gb|AC161500.4| Mus musculus chromosome 7, clone RP23-145H5, complete sequence
          Length = 223833

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   cggcactgccagcgccctgc 424
             ||||||||||||||||||||
Sbjct: 59584 cggcactgccagcgccctgc 59603
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>emb|AL731545.4| Human DNA sequence from clone RP11-431F18 on chromosome 10 Contains the
             5' end of a novel gene, complete sequence
          Length = 24239

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ccagcaaaattaaatgacca 63
             ||||||||||||||||||||
Sbjct: 14575 ccagcaaaattaaatgacca 14594
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 396     cagcgcccccggcactgccagcgc 419
               ||||||||||||||| ||||||||
Sbjct: 4619465 cagcgcccccggcacggccagcgc 4619488
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 482     agcggcggccgcattgccgg 501
               ||||||||||||||||||||
Sbjct: 4613787 agcggcggccgcattgccgg 4613806
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>gb|AY135339.1| Homo sapiens isolate MRPS35P3 mitochondrial ribosomal protein S35
           (MRPS35) pseudogene, nuclear pseudogene, partial
           sequence
          Length = 539

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  agaaatgttcaccagcaaaa 52
           ||||||||||||||||||||
Sbjct: 222 agaaatgttcaccagcaaaa 241
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>gb|AF161269.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0034K24, complete sequence
          Length = 142852

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   tggaagatgaagtagacggc 253
             ||||||||||||||||||||
Sbjct: 14436 tggaagatgaagtagacggc 14417
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 484    cggcggccgcattgccggcg 503
              ||||||||||||||||||||
Sbjct: 219541 cggcggccgcattgccggcg 219522
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>gb|AC006484.2| Homo sapiens chromosome 5, clone hRPK.448_K_10, complete sequence
          Length = 156814

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    agaaatgttcaccagcaaaa 52
             ||||||||||||||||||||
Sbjct: 39836 agaaatgttcaccagcaaaa 39817
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>gb|AC182541.1| Ateles geoffroyi clone UC1-374M20, complete sequence
          Length = 138146

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     atcagaagaagaaaagaaat 38
              ||||||||||||||||||||
Sbjct: 125635 atcagaagaagaaaagaaat 125654
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>gb|AC092228.1|AC092228 Drosophila melanogaster, chromosome 2L, region 35X-35X, BAC clone
             BACR21J17, complete sequence
          Length = 174974

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     aataacaaatttgaagatca 22
             ||||||||||||||||||||
Sbjct: 52326 aataacaaatttgaagatca 52307
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>ref|NG_002895.1| Homo sapiens mitochondrial ribosomal protein S35 pseudogene 3
           (MRPS35P3) on chromosome 10
          Length = 539

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 33  agaaatgttcaccagcaaaa 52
           ||||||||||||||||||||
Sbjct: 222 agaaatgttcaccagcaaaa 241
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      tggaagatgaagtagacggc 253
                ||||||||||||||||||||
Sbjct: 23372539 tggaagatgaagtagacggc 23372558
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     aagatcagaagaagaaaaga 35
              ||||||||||||||||||||
Sbjct: 729388 aagatcagaagaagaaaaga 729407
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>gb|AC010738.5| Homo sapiens BAC clone RP11-443I9 from 2, complete sequence
          Length = 121448

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     atcagaagaagaaaagaaat 38
              ||||||||||||||||||||
Sbjct: 114094 atcagaagaagaaaagaaat 114113
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>dbj|AP004867.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0036E06
          Length = 137926

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   aagatcagaagaagaaaaga 35
            ||||||||||||||||||||
Sbjct: 7519 aagatcagaagaagaaaaga 7538
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>gb|AC158669.3| Mus musculus 6 BAC RP23-66K6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 242779

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     agaagaagaaaagaaatgtt 41
              ||||||||||||||||||||
Sbjct: 154377 agaagaagaaaagaaatgtt 154396
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>dbj|AP004090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1399_H05
          Length = 147670

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    aagatcagaagaagaaaaga 35
             ||||||||||||||||||||
Sbjct: 86283 aagatcagaagaagaaaaga 86302
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>dbj|AK069550.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023024B12, full
            insert sequence
          Length = 2419

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   aagatcagaagaagaaaaga 35
            ||||||||||||||||||||
Sbjct: 1470 aagatcagaagaagaaaaga 1489
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>dbj|AK062468.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E04, full
           insert sequence
          Length = 594

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 tggaagatgaagtagacggc 253
           ||||||||||||||||||||
Sbjct: 419 tggaagatgaagtagacggc 400
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>gb|AF119222.1|AF119222 Oryza sativa BAC clone 1.H19, complete sequence
          Length = 77605

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 234  tggaagatgaagtagacggc 253
            ||||||||||||||||||||
Sbjct: 6821 tggaagatgaagtagacggc 6802
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>gb|AF128457.1|AF128457 Oryza sativa subsp. indica BAC clone 16F19 php20725 region,
           complete sequence
          Length = 70311

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 234 tggaagatgaagtagacggc 253
           ||||||||||||||||||||
Sbjct: 537 tggaagatgaagtagacggc 518
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>gb|AE003643.3| Drosophila melanogaster chromosome 2L, section 52 of 83 of the complete
              sequence
          Length = 236144

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      aataacaaatttgaagatca 22
              ||||||||||||||||||||
Sbjct: 180250 aataacaaatttgaagatca 180231
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>gb|AC153639.4| Mus musculus 6 BAC RP23-124H2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 190211

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     agaagaagaaaagaaatgtt 41
              ||||||||||||||||||||
Sbjct: 133470 agaagaagaaaagaaatgtt 133451
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>emb|CT485615.6| Mouse DNA sequence from clone RP23-32L22 on chromosome 16, complete
             sequence
          Length = 197249

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    agaagaagaaaagaaatgtt 41
             ||||||||||||||||||||
Sbjct: 31045 agaagaagaaaagaaatgtt 31064
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 234      tggaagatgaagtagacggc 253
                ||||||||||||||||||||
Sbjct: 23682449 tggaagatgaagtagacggc 23682468
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>dbj|AP006369.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT20N03, TM0212,
             complete sequence
          Length = 87407

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 22    agaagaagaaaagaaatgttcaccagca 49
             ||||||||| ||||| ||||||||||||
Sbjct: 40659 agaagaagacaagaactgttcaccagca 40686


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,083,606
Number of Sequences: 3902068
Number of extensions: 5083606
Number of successful extensions: 181264
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 180706
Number of HSP's gapped (non-prelim): 558
length of query: 516
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 493
effective length of database: 17,143,297,704
effective search space: 8451645768072
effective search space used: 8451645768072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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