ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33c08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY589578.1| Triticum aestivum beta-expansin TaEXPB1 mRNA, complete cds Length = 1034 Score = 161 bits (81), Expect = 3e-36 Identities = 129/145 (88%) Strand = Plus / Minus Query: 325 gggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttggt 384 ||||||| ||| ||| |||||||||| ||||||||||||||||||||||||| ||| ||| Sbjct: 916 gggctgctagtaggccgggatgacctggtcggcgacgagcgacctgccggactcgtcggt 857 Query: 385 gacccgcagggagaagggcccccgaagcgggcgccgcgtgtccaggcgccagatggagcc 444 ||| ||||| |||||||||||| | |||||||| || ||||||||||||||||||| || Sbjct: 856 gacgcgcagcgagaagggcccctgcagcgggcggagcctgtccaggcgccagatggatcc 797 Query: 445 ccaggactccctcatcggcctccag 469 ||| ||||||||||||||| ||||| Sbjct: 796 ccacgactccctcatcggcgtccag 772
>gb|AF261275.1| Oryza sativa beta-expansin (EXPB7) mRNA, complete cds Length = 1210 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 1030 tcgaactggacgatggagctgtaracggtgttgggctgccagtcggcggggatgacctga 971 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 970 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 911 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 910 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 855
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 169426 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 169367 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 169366 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 169307 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 169306 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 169251
>gb|AC118673.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0080O10, from chromosome 3, complete sequence Length = 127917 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 6493 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 6434 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 6433 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 6374 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 6373 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 6318
>gb|AC125411.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNAb0079B22, from chromosome 3, complete sequence Length = 156933 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 103426 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 103367 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 103366 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 103307 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 103306 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 103251
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 169426 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 169367 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 169366 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 169307 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 169306 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 169251
>gb|AF485811.1| Oryza sativa BAC OSJNa0049F05, complete sequence Length = 162241 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Plus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 93240 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 93299 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 93300 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 93359 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 93360 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 93415
>dbj|AK061423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-G02, full insert sequence Length = 1027 Score = 127 bits (64), Expect = 4e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| Sbjct: 838 tcgaactggacgatggagctgtagacggtgttgggctgccagtcggcggggatgacctga 779 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 ||||||| ||| | | |||||||| ||||||||| || ||||||||||||||| | ||| Sbjct: 778 tcggcgatgagggtcttgccggactcgttggtgatgcggagggagaagggcccctgcagc 719 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||| | |||||||| | ||| || || ||||| ||||||||||||||| |||| Sbjct: 718 gggtggttggtgtccagcctccatatcgatccccacgactccctcatcggcgtcca 663
>gb|AF332176.1|AF332176 Zea mays beta-expansin 3 (expB3) mRNA, partial cds Length = 788 Score = 113 bits (57), Expect = 5e-22 Identities = 135/161 (83%) Strand = Plus / Minus Query: 293 tcgaactggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctag 352 |||||||||||| ||||||||| ||| |||||||||||||||| || || ||||||| | Sbjct: 648 tcgaactggacgatggagctgtagacgttgtcgggctgccagtctgccggaatgacctgg 589 Query: 353 tcggcgacgagcgacctgccggacccgttggtgacccgcagggagaagggcccccgaagc 412 || || || |||| | |||||||| |||||||||| ||||| ||||||||||| | ||| Sbjct: 588 tccgccaccagcgtcttgccggactcgttggtgacgcgcagcgagaagggcccttgcagc 529 Query: 413 gggcgccgcgtgtccaggcgccagatggagccccaggactc 453 || || || ||||||| | ||| ||||||||||||||||| Sbjct: 528 ggccggcgggtgtccatcctccatatggagccccaggactc 488
>gb|AY692478.1| Triticum aestivum beta-expansin EXPB6 mRNA, partial cds Length = 671 Score = 95.6 bits (48), Expect = 1e-16 Identities = 111/134 (82%) Strand = Plus / Minus Query: 326 ggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttggtg 385 |||| |||||||||||||||||||| |||||| |||||| | |||||||| ||||||| Sbjct: 331 ggctcccagtcggcggggatgacctgttcggcggcgagcgtcttgccggactcgttggtk 272 Query: 386 acccgcagggagaagggcccccgaagcgggcgccgcgtgtccaggcgccagatggagccc 445 | | ||| |||||||| ||| | | |||||||||||||||| ||||||||||| ||| Sbjct: 271 atgcscagcgagaaggggccctgcatggggcgccgcgtgtccatccgccagatggamccc 212 Query: 446 caggactccctcat 459 || || ||| |||| Sbjct: 211 cacgamtccgtcat 198 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 185 caccggaagtcacaggcgacgtctca 210 ||||||| |||||||||||||||||| Sbjct: 563 caccggacgtcacaggcgacgtctca 538
>ref|NM_197698.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB6 (OSJNBb0014I11.3), mRNA Length = 1240 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 785 aggcgccagatggagccccacgactccctcatcggcgtccag 744
>gb|AF261274.1| Oryza sativa beta-expansin (EXPB6) mRNA, complete cds Length = 1250 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 778 aggcgccagatggagccccacgactccctcatcggcgtccag 737
>gb|AC037426.12| Oryza sativa chromosome 10 BAC OSJNBb0014I11 genomic sequence, complete sequence Length = 135510 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 22919 aggcgccagatggagccccacgactccctcatcggcgtccag 22878 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 5164 ccagatggagccccacgactcgcgcatcggcgtcca 5129
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 21311440 aggcgccagatggagccccacgactccctcatcggcgtccag 21311481 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 21341624 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 21341578 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 21341715 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 21341664 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 21329195 ccagatggagccccacgactcgcgcatcggcgtcca 21329230
>dbj|AK105799.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-A09, full insert sequence Length = 1257 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 798 aggcgccagatggagccccacgactccctcatcggcgtccag 757
>dbj|AK104197.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-A02, full insert sequence Length = 1257 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 798 aggcgccagatggagccccacgactccctcatcggcgtccag 757
>dbj|AK101728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061F13, full insert sequence Length = 1263 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 804 aggcgccagatggagccccacgactccctcatcggcgtccag 763
>dbj|AK061498.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-D06, full insert sequence Length = 1259 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 798 aggcgccagatggagccccacgactccctcatcggcgtccag 757
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 428 aggcgccagatggagccccaggactccctcatcggcctccag 469 |||||||||||||||||||| ||||||||||||||| ||||| Sbjct: 21322704 aggcgccagatggagccccacgactccctcatcggcgtccag 21322745 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 21352887 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 21352841 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 21352978 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 21352927 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 21340459 ccagatggagccccacgactcgcgcatcggcgtcca 21340494
>gb|AY543538.1| Triticum aestivum expansin EXPB3 mRNA, complete cds Length = 834 Score = 67.9 bits (34), Expect = 3e-08 Identities = 112/138 (81%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttggtgacccg 390 ||||| ||| |||||||||| |||||| || |||||| |||||||| ||||||||| || Sbjct: 769 ccagttggccgggatgaccttgtcggccaccagcgacttgccggactcgttggtgatgcg 710 Query: 391 cagggagaagggcccccgaagcgggcgccgcgtgtccaggcgccagatggagccccagga 450 || |||||||||| || | || || | | | ||| || ||||||||||||||||| || Sbjct: 709 catggagaagggcgcctggaggcggtggccagagtcgagccgccagatggagccccatga 650 Query: 451 ctccctcatcggcctcca 468 ||| | ||||||| |||| Sbjct: 649 ctcgcgcatcggcgtcca 632
>emb|AJ295942.1|FPR295942 Festuca pratensis mRNA for beta expansin B3 (expB3 gene) Length = 1219 Score = 65.9 bits (33), Expect = 1e-07 Identities = 105/129 (81%) Strand = Plus / Minus Query: 341 gggatgacctagtcggcgacgagcgacctgccggacccgttggtgacccgcagggagaag 400 ||||||| || ||||||||||||| | |||||||| ||||||||| |||| ||||||| Sbjct: 854 gggatgatcttgtcggcgacgagctgcttgccggactcgttggtgatgcgcatggagaag 795 Query: 401 ggcccccgaagcgggcgccgcgtgtccaggcgccagatggagccccaggactccctcatc 460 ||| || | || || | | ||||| |||||||||||| ||||| |||||||||||| Sbjct: 794 ggcgcctggaggcggtggttggagtccatgcgccagatggatccccacgactccctcatc 735 Query: 461 ggcctccag 469 ||| ||||| Sbjct: 734 ggcgtccag 726
>ref|NM_197701.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB4 (OSJNBa0010C11.2), mRNA Length = 1340 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 835 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 789 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 926 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 875
>gb|AF261272.1| Oryza sativa beta-expansin (EXPB4) mRNA, complete cds Length = 1249 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 791 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 745 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 882 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 831
>gb|AC069300.7| Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence Length = 147117 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 16637 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 16591 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 16728 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 16677 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 4209 ccagatggagccccacgactcgcgcatcggcgtcca 4244
>gb|AY589579.1| Triticum aestivum beta-expansin TaEXPB2 mRNA, complete cds Length = 897 Score = 61.9 bits (31), Expect = 2e-06 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttggtgacccg 390 ||||| ||| |||||||||| |||||| || |||| | |||||||| ||||||||| || Sbjct: 790 ccagttggccgggatgaccttgtcggccaccagcgtcttgccggactcgttggtgatgcg 731 Query: 391 cagggagaagggcccccgaag-cgggcgccgcgtgtccaggcgccagatggagccccagg 449 || |||||||||| || | || ||| |||| | ||| || ||||||||||||||||| | Sbjct: 730 catggagaagggcgcctggaggcggtggccg-gagtcgagccgccagatggagccccatg 672 Query: 450 actccctcatcggcctcca 468 |||| | ||||||| |||| Sbjct: 671 actcgcgcatcggcgtcca 653
>dbj|AK105981.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-F12, full insert sequence Length = 1290 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 848 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 802 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 939 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 888
>dbj|AK103929.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D11, full insert sequence Length = 1266 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 841 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 795 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 932 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 881
>dbj|AK101806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K12, full insert sequence Length = 1883 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 1425 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 1379 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 1516 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 1465
>dbj|AK101357.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033035B15, full insert sequence Length = 1475 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 1029 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 983 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 1120 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 1069
>dbj|AK064012.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-H01, full insert sequence Length = 1794 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 847 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 801 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 938 ccagtaggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 887
>dbj|AK060096.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-G02, full insert sequence Length = 1293 Score = 61.9 bits (31), Expect = 2e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 |||||||| | ||||||||||||||| ||||||||||||||| |||| Sbjct: 847 gtgtccagcctccagatggagccccacgactccctcatcggcgtcca 801 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttg 382 ||||| ||| |||||||| | || ||||||||||| | |||||||| ||||| Sbjct: 938 ccagttggccgggatgacgttgttggcgacgagcgtcttgccggactcgttg 887
>gb|AY543536.1| Triticum aestivum expansin EXPB1 mRNA, complete cds Length = 810 Score = 61.9 bits (31), Expect = 2e-06 Identities = 114/139 (82%), Gaps = 2/139 (1%) Strand = Plus / Minus Query: 331 ccagtcggcggggatgacctagtcggcgacgagcgacctgccggacccgttggtgacccg 390 ||||| ||| |||||||||| |||||| || |||| | |||||||| ||||||||| || Sbjct: 763 ccagttggccgggatgaccttgtcggccaccagcgtcttgccggactcgttggtgatgcg 704 Query: 391 cagggagaagggcccccgaag-cgggcgccgcgtgtccaggcgccagatggagccccagg 449 || |||||||||| || | || ||| |||| | |||||| ||||||||||| ||||| | Sbjct: 703 catggagaagggcgcctggaggcggtggccg-gagtccagccgccagatggatccccacg 645 Query: 450 actccctcatcggcctcca 468 |||| | ||||||| |||| Sbjct: 644 actcgcgcatcggcgtcca 626
>gb|BT019137.1| Zea mays clone Contig781.F mRNA sequence Length = 1044 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||||||| |||||||| ||||||||||||||| | ||||||| |||| Sbjct: 433 gtgtccatgcgccagacggagccccaggactcgcgcatcggcgtcca 387
>gb|BT017478.1| Zea mays clone EL01N0408G02.c mRNA sequence Length = 832 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||||||| |||||||| ||||||||||||||| | ||||||| |||| Sbjct: 172 gtgtccatgcgccagacggagccccaggactcgcgcatcggcgtcca 126 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Minus Query: 297 actggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctagtcgg 356 |||||||| ||||| ||| | ||||| ||| |||||| ||| |||||||| | || || Sbjct: 297 actggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgttgttgg 238 Query: 357 cgacgagcgacctgccggacccgttg 382 ||||||||| | |||||||| ||||| Sbjct: 237 cgacgagcgtcttgccggactcgttg 212
>gb|AF332181.1|AF332181 Zea mays beta-expansin 8 (expB8) mRNA, complete cds Length = 1479 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggcctcca 468 ||||||| |||||||| ||||||||||||||| | ||||||| |||| Sbjct: 808 gtgtccatgcgccagacggagccccaggactcgcgcatcggcgtcca 762 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Minus Query: 297 actggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctagtcgg 356 |||||||| ||||| ||| | ||||| ||| |||||| ||| |||||||| | || || Sbjct: 933 actggacgaaggagcggtagaaggtgttggggcgccagttggccgggatgacgttgttgg 874 Query: 357 cgacgagcgacctgccggacccgttg 382 ||||||||| | |||||||| ||||| Sbjct: 873 cgacgagcgtcttgccggactcgttg 848
>gb|AF332175.1|AF332175 Zea mays beta-expansin 2 (expB2) mRNA, partial cds Length = 907 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 422 gtgtccaggcgccagatggagccccaggactccctcatcggc 463 ||||||| |||||||| ||||||||||||||| | ||||||| Sbjct: 395 gtgtccatgcgccagacggagccccaggactcgcgcatcggc 354
>gb|AY589580.1| Triticum aestivum beta-expansin TaEXPB3 mRNA, complete cds Length = 1013 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 431 cgccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||||||||||| | ||||||| |||| Sbjct: 717 cgccagatggagccccaggactcgcgcatcggcgtcca 680
>gb|AY543542.1| Triticum aestivum expansin EXPB8 mRNA, complete cds Length = 1078 Score = 52.0 bits (26), Expect = 0.002 Identities = 53/62 (85%) Strand = Plus / Minus Query: 389 cgcagggagaagggcccccgaagcgggcgccgcgtgtccaggcgccagatggagccccag 448 |||| ||||||||||||| | |||||||| | ||||||| ||||||||||| |||||| Sbjct: 743 cgcatggagaagggcccctgcagcgggcggctggtgtccatccgccagatggatccccag 684 Query: 449 ga 450 || Sbjct: 683 ga 682
>gb|AY543541.1| Triticum aestivum expansin EXPB7 mRNA, complete cds Length = 1056 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 431 cgccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||||||||||| | ||||||| |||| Sbjct: 749 cgccagatggagccccaggactcgcgcatcggcgtcca 712
>gb|AY543537.1| Triticum aestivum expansin EXPB2 mRNA, complete cds Length = 948 Score = 52.0 bits (26), Expect = 0.002 Identities = 71/86 (82%) Strand = Plus / Minus Query: 297 actggacgtcggagctgtacacggtgtcgggctgccagtcggcggggatgacctagtcgg 356 |||||||| ||||| ||| | ||||| |||| ||||| ||| |||||||||| || || Sbjct: 873 actggacgaaggagcggtagaaggtgttgggcctccagttggccgggatgaccttgttgg 814 Query: 357 cgacgagcgacctgccggacccgttg 382 ||||||||| | |||||||| ||||| Sbjct: 813 cgacgagcgtcttgccggactcgttg 788 Score = 50.1 bits (25), Expect = 0.007 Identities = 31/33 (93%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccctcatc 460 |||||||||| ||||||||| |||||||||||| Sbjct: 742 aggcgccagacggagccccacgactccctcatc 710
>gb|AY533103.1| Triticum aestivum beta-expansin 1 (EXPB1) gene, complete cds Length = 1149 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgc 371 |||| |||||||||| || ||||| |||||||||||| | | ||||| |||| | ||| Sbjct: 1115 tgtagacggtgtcggccttccagttggcggggatgacgtccttggcgatgagcttcttgc 1056 Query: 372 cggacccgttggtgacccgcagggagaaggg 402 ||||| || ||||||| || | ||||||||| Sbjct: 1055 cggactcgctggtgacgcggatggagaaggg 1025
>gb|AY533101.1| Triticum aestivum beta-expansin 1 (EXPB1) mRNA, complete cds Length = 1111 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgc 371 |||| |||||||||| || ||||| |||||||||||| | | ||||| |||| | ||| Sbjct: 831 tgtagacggtgtcggccttccagttggcggggatgacgtccttggcgatgagcttcttgc 772 Query: 372 cggacccgttggtgacccgcagggagaaggg 402 ||||| || ||||||| || | ||||||||| Sbjct: 771 cggactcgctggtgacgcggatggagaaggg 741
>gb|AY533100.1| Triticum aestivum beta-expansin 1 (EXPB1) mRNA, partial cds Length = 496 Score = 46.1 bits (23), Expect = 0.10 Identities = 74/91 (81%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgc 371 |||| |||||||||| || ||||| |||||||||||| | | ||||| |||| | ||| Sbjct: 291 tgtagacggtgtcggccttccagttggcggggatgacgtccttggcgatgagcttcttgc 232 Query: 372 cggacccgttggtgacccgcagggagaaggg 402 ||||| || ||||||| || | ||||||||| Sbjct: 231 cggactcgctggtgacgcggatggagaaggg 201
>gb|AF332179.1|AF332179 Zea mays beta-expansin 6 (expB6) mRNA, complete cds Length = 1142 Score = 46.1 bits (23), Expect = 0.10 Identities = 71/87 (81%) Strand = Plus / Minus Query: 367 cctgccggacccgttggtgacccgcagggagaagggcccccgaagcgggcgccgcgtgtc 426 |||||||||| ||||||||| |||| ||||||||| || || |||||||| | ||| Sbjct: 839 cctgccggactcgttggtgatgcgcatggagaaggggccacggagcgggcggttggggtc 780 Query: 427 caggcgccagatggagccccaggactc 453 | | ||||||||||||||||||||| Sbjct: 779 gatcctccagatggagccccaggactc 753
>gb|AF332178.1|AF332178 Zea mays beta-expansin 5 (expB5) mRNA, partial cds Length = 650 Score = 46.1 bits (23), Expect = 0.10 Identities = 83/103 (80%) Strand = Plus / Minus Query: 367 cctgccggacccgttggtgacccgcagggagaagggcccccgaagcgggcgccgcgtgtc 426 |||||||||| |||||||||| ||||| ||||||||| || | ||| | | | ||| Sbjct: 457 cctgccggactcgttggtgacgcgcagcgagaagggcgcctgtagcctgtggttggcgtc 398 Query: 427 caggcgccagatggagccccaggactccctcatcggcctccag 469 ||| | ||||||||| ||||||||||| | ||||||| ||||| Sbjct: 397 cagcctccagatggacccccaggactcgcgcatcggcgtccag 355
>gb|AY104151.1| Zea mays PCO112411 mRNA sequence Length = 1171 Score = 46.1 bits (23), Expect = 0.10 Identities = 71/87 (81%) Strand = Plus / Minus Query: 367 cctgccggacccgttggtgacccgcagggagaagggcccccgaagcgggcgccgcgtgtc 426 |||||||||| ||||||||| |||| ||||||||| || || |||||||| | ||| Sbjct: 848 cctgccggactcgttggtgatgcgcatggagaaggggccacggagcgggcggttggggtc 789 Query: 427 caggcgccagatggagccccaggactc 453 | | ||||||||||||||||||||| Sbjct: 788 gatcctccagatggagccccaggactc 762
>gb|AY533104.1| Triticum aestivum beta-expansin 2 (EXPB2) gene, complete cds Length = 1216 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Minus Query: 317 acggtgtcgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccggac 376 |||||||||| || ||||| |||||||||||| | | ||||| |||| | |||||||| Sbjct: 1031 acggtgtcggccttccagttggcggggatgacgtccttggcgatgagcttcttgccggac 972 Query: 377 ccgttggtgacccgcagggagaaggg 402 || ||||||| || | ||||||||| Sbjct: 971 tcgctggtgacgcggatggagaaggg 946
>gb|AY533102.1| Triticum aestivum beta-expansin 2 (EXPB2) mRNA, complete cds Length = 1068 Score = 44.1 bits (22), Expect = 0.41 Identities = 70/86 (81%) Strand = Plus / Minus Query: 317 acggtgtcgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccggac 376 |||||||||| || ||||| |||||||||||| | | ||||| |||| | |||||||| Sbjct: 796 acggtgtcggccttccagttggcggggatgacgtccttggcgatgagcttcttgccggac 737 Query: 377 ccgttggtgacccgcagggagaaggg 402 || ||||||| || | ||||||||| Sbjct: 736 tcgctggtgacgcggatggagaaggg 711
>gb|AF177030.1|AF177030 Cynodon dactylon acidic allergen Cyn d 1 precursor, mRNA, partial cds Length = 735 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgac 348 |||| ||||||||||||| |||||| |||||||||| Sbjct: 715 tgtagacggtgtcgggcttccagtcttcggggatgac 679
>gb|AF177380.1| Cynodon dactylon acidic Cyn d 1 isoallergen isoform 4 precursor, mRNA, complete cds Length = 789 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgac 348 |||| ||||||||||||| |||||| |||||||||| Sbjct: 769 tgtagacggtgtcgggcttccagtcttcggggatgac 733
>gb|AF177378.1| Cynodon dactylon acidic Cyn d 1 isoallergen isoform 2 precursor, mRNA, complete cds Length = 789 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgac 348 |||| ||||||||||||| |||||| |||||||||| Sbjct: 769 tgtagacggtgtcgggcttccagtcttcggggatgac 733
>gb|AF159703.2| Cynodon dactylon clone 009 acidic Cyn d 1 isoallergen isoform 1 precursor, mRNA, partial cds Length = 735 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgac 348 |||| ||||||||||||| |||||| |||||||||| Sbjct: 715 tgtagacggtgtcgggcttccagtcttcggggatgac 679
>gb|AY543540.1| Triticum aestivum expansin EXPB5 mRNA, complete cds Length = 960 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 312 tgtacacggtgtcgggctgccagtcggcggggatgac 348 |||| |||||||||| || ||||| |||||||||||| Sbjct: 784 tgtagacggtgtcggccttccagttggcggggatgac 748
>emb|AL805936.8| Mouse DNA sequence from clone RP23-120K6 on chromosome X, complete sequence Length = 151030 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 aggctgccacgtatgttatgt 139 ||||||||||||||||||||| Sbjct: 25800 aggctgccacgtatgttatgt 25780
>gb|AY365046.1| Pan troglodytes BRCA1 (BRCA1) gene, complete cds Length = 80966 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 59915 aacttgtgtaatacaggaga 59934
>gb|AY589042.1| Gorilla gorilla breast cancer type 1 (BRCA1) gene, complete cds Length = 81346 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 60341 aacttgtgtaatacaggaga 60360
>gb|AY589040.1| Pongo pygmaeus breast cancer type 1 (BRCA1) gene, complete cds Length = 83366 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 62096 aacttgtgtaatacaggaga 62115
>ref|XM_467144.1| Oryza sativa (japonica cultivar-group), mRNA Length = 822 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 324 cgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccgga 375 |||||||||| ||||||||||||| | | ||||||||||| || |||||| Sbjct: 778 cgggctgccacccggcggggatgacgttgctggcgacgagcgtccggccgga 727
>ref|NM_197700.1| Oryza sativa (japonica cultivar-group) beta-expansin EXPB3 (OSJNBb0014I11.1), mRNA Length = 904 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 757 ccagatggagccccacgactcgcgcatcggcgtcca 722
>gb|L78833.1| Homo sapiens BRCA1 (BRCA1) gene, complete cds; ribosomal protein L21-like protein (rpL21) pseudogene, complete sequence; Rho7 (Rho7) and VatI (VatI) genes, complete cds; and unknown (ifp35) gene, exons 1 through 3 and partial cds Length = 117143 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 62503 aacttgtgtaatacaggaga 62522
>gb|AF391107.1| Oryza sativa beta-expansin OsEXPB14 (EXPB14) gene, partial cds Length = 1348 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 324 cgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccgga 375 |||||||||| ||||||||||||| | | ||||||||||| || |||||| Sbjct: 438 cgggctgccacccggcggggatgacgttgctggcgacgagcgtccggccgga 387
>gb|DQ478408.1| Homo sapiens neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; neighbor of BRCA1 gene 2 (NBR2) gene, complete cds; and early onset breast cancer 1 (BRCA1) gene, partial cds Length = 150505 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 131328 aacttgtgtaatacaggaga 131347
>gb|AC156620.10| Mus musculus chromosome 5, clone RP23-80G18, complete sequence Length = 248320 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 aaaaaatccatgcaggcatg 247 |||||||||||||||||||| Sbjct: 95710 aaaaaatccatgcaggcatg 95691
>gb|DQ190457.1| Homo sapiens clone mck41_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; hypothetical protein LOC10230 (NBR2) gene, complete cds; and breast cancer 1 early onset (BRCA1) gene, partial cds Length = 147576 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 128391 aacttgtgtaatacaggaga 128410
>gb|DQ190456.1| Homo sapiens clone mck578_U neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 150669 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 128433 aacttgtgtaatacaggaga 128452
>gb|DQ190455.1| Homo sapiens clone mck554_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 155470 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 130996 aacttgtgtaatacaggaga 131015
>gb|DQ190454.1| Homo sapiens clone mck43_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 150582 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 123852 aacttgtgtaatacaggaga 123871
>gb|DQ190453.1| Homo sapiens clone mck55_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 156879 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 129696 aacttgtgtaatacaggaga 129715
>gb|DQ190452.1| Homo sapiens clone mck94_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 156121 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 127334 aacttgtgtaatacaggaga 127353
>gb|DQ190451.1| Homo sapiens clone mck47_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 161765 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 127404 aacttgtgtaatacaggaga 127423
>gb|DQ190450.1| Homo sapiens clone mck432_A neighbor of BRCA1 gene 1 (NBR1) gene, partial cds; and hypothetical protein LOC10230 (NBR2) and breast cancer 1 early onset (BRCA1) genes, complete cds Length = 167910 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 128280 aacttgtgtaatacaggaga 128299
>gb|AF261271.1| Oryza sativa beta-expansin (EXPB3) mRNA, complete cds Length = 1319 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 756 ccagatggagccccacgactcgcgcatcggcgtcca 721
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccc 455 |||||||||||| || |||||||||||| Sbjct: 150631 aggcgccagatgcagacccaggactccc 150604
>gb|CP000089.1| Dechloromonas aromatica RCB, complete genome Length = 4501104 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 ctactcgctgcctactccag 101 |||||||||||||||||||| Sbjct: 3654467 ctactcgctgcctactccag 3654486
>gb|AC119275.12| Mus musculus chromosome 8, clone RP24-459A4, complete sequence Length = 203937 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 428 aggcgccagatggagccccaggactccc 455 |||||||||||| || |||||||||||| Sbjct: 50015 aggcgccagatgcagacccaggactccc 49988
>gb|AC106811.2| Homo sapiens chromosome 5 clone RP11-551B15, complete sequence Length = 148362 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 2 tatacacaccagtgacataataaa 25 ||||||||||||||||| |||||| Sbjct: 113453 tatacacaccagtgacacaataaa 113476
>gb|AY273801.1| Homo sapiens breast cancer 1, early onset (BRCA1) gene, complete cds Length = 82899 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 60147 aacttgtgtaatacaggaga 60166
>dbj|AK035160.1| Mus musculus 12 days embryo embryonic body between diaphragm region and neck cDNA, RIKEN full-length enriched library, clone:9430094N12 product:HEART- AND NEURAL CREST DERIVATIVES-EXPRESSED PROTEIN 2 (DECIDUUM, HEART, AUTONOMIC NERVOUS SYSTEM AND NEURAL CREST DERIVATIVES- EXPRESSED PROTEIN 2) (DHAND) homolog [Homo sapiens], full insert sequence Length = 2238 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 428 aggcgccagatggagccccaggactccc 455 |||||||||||| || |||||||||||| Sbjct: 1610 aggcgccagatgcagacccaggactccc 1637
>gb|AF332180.1|AF332180 Zea mays beta-expansin 7 (expB7) mRNA, complete cds Length = 1173 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||| ||||||||||| | ||||||| |||| Sbjct: 730 ccagatggatccccaggactcgcgcatcggcgtcca 695
>ref|XM_624840.1| PREDICTED: Apis mellifera similar to ENSANGP00000003616 (LOC552466), mRNA Length = 2804 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tacgtgtacatatgtagctt 161 |||||||||||||||||||| Sbjct: 2673 tacgtgtacatatgtagctt 2692
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 ggagccccaggactccctcatcgg 462 ||||||||| |||||||||||||| Sbjct: 6210916 ggagccccatgactccctcatcgg 6210939
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 324 cgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccgga 375 |||||||||| ||||||||||||| | | ||||||||||| || |||||| Sbjct: 26658437 cgggctgccacccggcggggatgacgttgctggcgacgagcgtccggccgga 26658386
>ref|XM_624713.1| PREDICTED: Apis mellifera similar to ENSANGP00000003616 (LOC552337), mRNA Length = 2987 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 tacgtgtacatatgtagctt 161 |||||||||||||||||||| Sbjct: 2856 tacgtgtacatatgtagctt 2875
>gb|AC073288.27| Homo sapiens 3 BAC RP11-543D10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174025 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atatacacaccagtgacata 20 |||||||||||||||||||| Sbjct: 42929 atatacacaccagtgacata 42910
>gb|AC138688.2| Homo sapiens chromosome 17, clone RP11-300H14, complete sequence Length = 183093 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ataaacttgtgtaatacagg 40 |||||||||||||||||||| Sbjct: 81005 ataaacttgtgtaatacagg 80986
>gb|AC135721.4| Homo sapiens, clone CTD-3199J23, complete sequence Length = 150472 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 aacttgtgtaatacaggaga 43 |||||||||||||||||||| Sbjct: 93190 aacttgtgtaatacaggaga 93209
>dbj|AP005072.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0708H12 Length = 162381 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 324 cgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccgga 375 |||||||||| ||||||||||||| | | ||||||||||| || |||||| Sbjct: 20467 cgggctgccacccggcggggatgacgttgctggcgacgagcgtccggccgga 20416
>dbj|AP005289.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_F09 Length = 139371 Score = 40.1 bits (20), Expect = 6.4 Identities = 44/52 (84%) Strand = Plus / Minus Query: 324 cgggctgccagtcggcggggatgacctagtcggcgacgagcgacctgccgga 375 |||||||||| ||||||||||||| | | ||||||||||| || |||||| Sbjct: 92598 cgggctgccacccggcggggatgacgttgctggcgacgagcgtccggccgga 92547
>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_C05 Length = 126112 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 439 ggagccccaggactccctcatcgg 462 ||||||||| |||||||||||||| Sbjct: 74309 ggagccccatgactccctcatcgg 74332
>dbj|AK105318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-117-F11, full insert sequence Length = 1031 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 512 ccagatggagccccacgactcgcgcatcggcgtcca 477
>dbj|AK100959.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023140O05, full insert sequence Length = 1313 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 433 ccagatggagccccaggactccctcatcggcctcca 468 ||||||||||||||| ||||| | ||||||| |||| Sbjct: 768 ccagatggagccccacgactcgcgcatcggcgtcca 733
>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete sequence Length = 237318 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 taatacaggagaaattacaa 51 |||||||||||||||||||| Sbjct: 146275 taatacaggagaaattacaa 146256 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,973,509 Number of Sequences: 3902068 Number of extensions: 2973509 Number of successful extensions: 50115 Number of sequences better than 10.0: 92 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49824 Number of HSP's gapped (non-prelim): 284 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
