Clone Name | rbart33c06 |
---|---|
Clone Library Name | barley_pub |
>gb|AC027660.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone BAC nbxb0045B21, complete sequence Length = 152397 Score = 278 bits (140), Expect = 2e-71 Identities = 239/272 (87%) Strand = Plus / Plus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 82086 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 82145 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 82146 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 82205 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 82206 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 82265 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 82266 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 82325 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 82326 caggctgtcagagtctgttgttgcatcggggt 82357
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 278 bits (140), Expect = 2e-71 Identities = 239/272 (87%) Strand = Plus / Plus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 13913460 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13913519 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 13913520 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13913579 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 13913580 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13913639 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 13913640 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13913699 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 13913700 caggctgtcagagtctgttgttgcatcggggt 13913731
>dbj|AK065828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013040G23, full insert sequence Length = 1152 Score = 278 bits (140), Expect = 2e-71 Identities = 239/272 (87%) Strand = Plus / Minus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 617 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 558 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 557 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 498 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 497 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 438 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 437 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 378 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 377 caggctgtcagagtctgttgttgcatcggggt 346
>dbj|AK061548.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-A08, full insert sequence Length = 1212 Score = 278 bits (140), Expect = 2e-71 Identities = 239/272 (87%) Strand = Plus / Minus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 971 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 912 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 911 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 852 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 851 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 792 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 791 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 732 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 731 caggctgtcagagtctgttgttgcatcggggt 700
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 278 bits (140), Expect = 2e-71 Identities = 239/272 (87%) Strand = Plus / Plus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 13920802 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 13920861 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 13920862 caccatgtagttcggattcttggcacactcccctactgcagcccactgggggcagaggac 13920921 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 13920922 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 13920981 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 13920982 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 13921041 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 13921042 caggctgtcagagtctgttgttgcatcggggt 13921073
>ref|NM_196478.1| Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0045B21.11), mRNA Length = 1110 Score = 276 bits (139), Expect = 6e-71 Identities = 229/259 (88%) Strand = Plus / Minus Query: 229 cacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttg 288 ||||| ||||||||||||| |||||||||||||||||| || || |||||||| ||||| Sbjct: 1061 cacacattgcagctcttccggcagaagccaggtgcttcattggtacccaccatgtagttc 1002 Query: 289 gggttcttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcg 348 || |||||||| |||||||| || ||||||||||| | ||||||||| |||||||||||| Sbjct: 1001 ggattcttggcacactcccctactgcagcccactgggggcagaggacgttctcatcctcg 942 Query: 349 cacccgtcaccggaagctccctgcttgcctgagttttcgaaggacctcacatggatccat 408 ||||||||| |||||||||||||||| | ||| | |||||||||||||||||||||||| Sbjct: 941 cacccgtcagtggaagctccctgcttgacagagatgtcgaaggacctcacatggatccat 882 Query: 409 ttcgtggcggaccacttctggccttcgatgacggggcagctcccgtgcaaactgtcaggg 468 || || |||||||||||||| ||||| ||||| |||||||||||||||| ||||||| | Sbjct: 881 ttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtgcaggctgtcagag 822 Query: 469 tctgtcgttgcatcagggt 487 ||||| |||||||| |||| Sbjct: 821 tctgttgttgcatcggggt 803
>dbj|AK098975.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091B02, full insert sequence Length = 1127 Score = 270 bits (136), Expect = 4e-69 Identities = 239/272 (87%), Gaps = 1/272 (0%) Strand = Plus / Minus Query: 216 aacttactgcacgcacacgttgcagctcttcctgcagaagccaggtgcttccttcgtgcc 275 ||||||||| | ||||| ||||||||||||| |||||||||||||||||| || || || Sbjct: 972 aacttactgtgcacacacattgcagctcttccggcagaagccaggtgcttcattggtacc 913 Query: 276 caccatatagttggggttcttggcgcactccccaacggcagcccactgcgagcagaggac 335 |||||| ||||| || |||||||| |||||||| || ||||||||||| | ||||||||| Sbjct: 912 caccatgtagttcggattcttggcacactcccctactgcagcccactggg-gcagaggac 854 Query: 336 attctcatcctcgcacccgtcaccggaagctccctgcttgcctgagttttcgaaggacct 395 ||||||||||||||||||||| |||||||||||||||| | ||| | ||||||||||| Sbjct: 853 gttctcatcctcgcacccgtcagtggaagctccctgcttgacagagatgtcgaaggacct 794 Query: 396 cacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctcccgtg 455 ||||||||||||||| || |||||||||||||| ||||| ||||| |||||||||||||| Sbjct: 793 cacatggatccatttagttgcggaccacttctgaccttcaatgaccgggcagctcccgtg 734 Query: 456 caaactgtcagggtctgtcgttgcatcagggt 487 || ||||||| |||||| |||||||| |||| Sbjct: 733 caggctgtcagagtctgttgttgcatcggggt 702
>gb|BT016704.1| Zea mays clone Contig537 mRNA sequence Length = 1224 Score = 194 bits (98), Expect = 2e-46 Identities = 209/246 (84%) Strand = Plus / Minus Query: 242 tcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgc 301 |||||| |||||||||||| |||||||| || |||||||| ||||| ||||||||||| | Sbjct: 986 tcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcac 927 Query: 302 actccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccgtcaccgg 361 |||| || || || |||||||| | |||||||| ||| || |||||||| |||||| || Sbjct: 926 actcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtcagagg 867 Query: 362 aagctccctgcttgcctgagttttcgaaggacctcacatggatccatttcgtggcggacc 421 || | |||||| || | | || || |||||||||||||||||||| || ||||||| Sbjct: 866 aacccggctgcttcccagggaggtcaaatgacctcacatggatccatttagttgcggacc 807 Query: 422 acttctggccttcgatgacggggcagctcccgtgcaaactgtcagggtctgtcgttgcat 481 |||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||| Sbjct: 806 acttctggccttcgattacggggcagctaccgtgcaagctgtcagagtctgtcgttgcat 747 Query: 482 cagggt 487 |||||| Sbjct: 746 cagggt 741
>gb|AY108933.1| Zea mays PCO071536 mRNA sequence Length = 676 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Minus Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450 |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 313 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 254 Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagg 485 |||||||| ||||||| |||||||||||||||||| Sbjct: 253 ccgtgcaagctgtcagagtctgtcgttgcatcagg 219 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Minus Query: 235 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294 ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| |||||| Sbjct: 469 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 410 Query: 295 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 354 ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| ||| Sbjct: 409 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 350 Query: 355 tca 357 ||| Sbjct: 349 tca 347
>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence Length = 366120 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Minus Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450 |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 25448 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 25389 Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagg 485 |||||||| ||||||| |||||||||||||||||| Sbjct: 25388 ccgtgcaagctgtcagagtctgtcgttgcatcagg 25354 Score = 89.7 bits (45), Expect = 8e-15 Identities = 93/109 (85%) Strand = Plus / Minus Query: 249 gcagaagccaggtgcttccttcgtgcccaccatatagttggggttcttggcgcactcccc 308 |||||||||||| |||||||| || |||||||| ||||| ||||||||||| ||||| || Sbjct: 25590 gcagaagccaggagcttccttggtccccaccatgtagttagggttcttggcacactcacc 25531 Query: 309 aacggcagcccactgcgagcagaggacattctcatcctcgcacccgtca 357 || || |||||||| | |||||||| ||| || |||||||| |||||| Sbjct: 25530 cacagctgcccactgggggcagaggatattgtcgtcctcgcatccgtca 25482
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 141 bits (71), Expect = 2e-30 Identities = 89/95 (93%) Strand = Plus / Minus Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450 |||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||| Sbjct: 28105 gacctcacatggatccatttagttgcggaccacttctggccttcgattacggggcagcta 28046 Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagg 485 |||||||| ||||||| |||||||||||||||||| Sbjct: 28045 ccgtgcaagctgtcagagtctgtcgttgcatcagg 28011 Score = 109 bits (55), Expect = 9e-21 Identities = 106/123 (86%) Strand = Plus / Minus Query: 235 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294 ||||||||||||| |||||||||||| |||||||| || |||||||| ||||| |||||| Sbjct: 28261 ttgcagctcttccggcagaagccaggagcttccttggtccccaccatgtagttagggttc 28202 Query: 295 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctcgcacccg 354 ||||| ||||| || || || |||||||| | |||||||| ||| || |||||||| ||| Sbjct: 28201 ttggcacactcacccacagctgcccactgggggcagaggatattgtcgtcctcgcatccg 28142 Query: 355 tca 357 ||| Sbjct: 28141 tca 28139
>gb|AY109606.1| Zea mays CL4591_1 mRNA sequence Length = 1093 Score = 129 bits (65), Expect = 9e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 391 gacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagctc 450 |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| Sbjct: 755 gacctcacatggatccatttagtcgcggaccacttctggccttcgatggcggggcagcta 696 Query: 451 ccgtgcaaactgtcagggtctgtcgttgcatcagggt 487 |||||||| ||||||| |||||| |||| |||||||| Sbjct: 695 ccgtgcaagctgtcagagtctgttgttgaatcagggt 659 Score = 115 bits (58), Expect = 1e-22 Identities = 98/113 (86%) Strand = Plus / Minus Query: 235 ttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttggggttc 294 ||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||| Sbjct: 911 ttgcagctcttccggcagaagccaggtgcttccttggtccccaccatgtagttagggttc 852 Query: 295 ttggcgcactccccaacggcagcccactgcgagcagaggacattctcatcctc 347 ||||||||||| || ||||| ||||||| ||||||||||| || ||||| Sbjct: 851 ttggcgcactcgcccacggccgcccactnnnnncagaggacattgtcgtcctc 799
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 389 aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448 |||| |||||||||||||||||||| || |||||||||| ||||| ||||| ||||||| Sbjct: 3553340 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553281 Query: 449 tcccgtgca 457 | ||||||| Sbjct: 3553280 ttccgtgca 3553272 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437 ||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 33219024 acatggatccatttcgttgcagaccatttctcgccttcgat 33219064 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291 |||||||| ||||||| |||||||||||| | ||| | ||||| ||||| || |||| Sbjct: 3553491 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553432 Query: 292 ttcttggcgcactccccaacggcagccca 320 |||||||| ||||| ||| | |||||||| Sbjct: 3553431 ttcttggcacactctccagcagcagccca 3553403 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccagg 260 |||||||| ||||||| |||||||||||| Sbjct: 3550608 acgttgcaactcttccggcagaagccagg 3550580 Score = 42.1 bits (21), Expect = 1.7 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 288 ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346 |||||||||||| ||||| || |||||||||| ||| |||||||| |||| ||||||| Sbjct: 3550549 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550491 Query: 347 cgcac 351 ||||| Sbjct: 3550490 cgcac 3550486
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 389 aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448 |||| |||||||||||||||||||| || |||||||||| ||||| ||||| ||||||| Sbjct: 3553451 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 3553392 Query: 449 tcccgtgca 457 | ||||||| Sbjct: 3553391 ttccgtgca 3553383 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437 ||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 33309534 acatggatccatttcgttgcagaccatttctcgccttcgat 33309574 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291 |||||||| ||||||| |||||||||||| | ||| | ||||| ||||| || |||| Sbjct: 3553602 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 3553543 Query: 292 ttcttggcgcactccccaacggcagccca 320 |||||||| ||||| ||| | |||||||| Sbjct: 3553542 ttcttggcacactctccagcagcagccca 3553514 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccagg 260 |||||||| ||||||| |||||||||||| Sbjct: 3550719 acgttgcaactcttccggcagaagccagg 3550691 Score = 42.1 bits (21), Expect = 1.7 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 288 ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346 |||||||||||| ||||| || |||||||||| ||| |||||||| |||| ||||||| Sbjct: 3550660 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 3550602 Query: 347 cgcac 351 ||||| Sbjct: 3550601 cgcac 3550597
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 73.8 bits (37), Expect = 5e-10 Identities = 61/69 (88%) Strand = Plus / Minus Query: 389 aggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcagc 448 |||| |||||||||||||||||||| || |||||||||| ||||| ||||| ||||||| Sbjct: 70993 aggatctcacatggatccatttcgtcgccgaccacttctcgccttgtatgacagggcagc 70934 Query: 449 tcccgtgca 457 | ||||||| Sbjct: 70933 ttccgtgca 70925 Score = 50.1 bits (25), Expect = 0.007 Identities = 73/89 (82%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccaggtgcttccttcgtgcccaccatatagttgggg 291 |||||||| ||||||| |||||||||||| | ||| | ||||| ||||| || |||| Sbjct: 71144 acgttgcaactcttccggcagaagccaggggattcactggtgccgaccatgtaaccgggg 71085 Query: 292 ttcttggcgcactccccaacggcagccca 320 |||||||| ||||| ||| | |||||||| Sbjct: 71084 ttcttggcacactctccagcagcagccca 71056 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 232 acgttgcagctcttcctgcagaagccagg 260 |||||||| ||||||| |||||||||||| Sbjct: 68261 acgttgcaactcttccggcagaagccagg 68233 Score = 42.1 bits (21), Expect = 1.7 Identities = 56/65 (86%), Gaps = 2/65 (3%) Strand = Plus / Minus Query: 288 ggggttcttggcgcactccccaacggcagccca-ctgcgagcagaggacattctcatcct 346 |||||||||||| ||||| || |||||||||| ||| |||||||| |||| ||||||| Sbjct: 68202 ggggttcttggcacactctcctgcggcagcccagctg-gagcagagaacatgttcatcct 68144 Query: 347 cgcac 351 ||||| Sbjct: 68143 cgcac 68139
>gb|BT017965.1| Zea mays clone EL01N0523F06.c mRNA sequence Length = 1150 Score = 61.9 bits (31), Expect = 2e-06 Identities = 61/71 (85%) Strand = Plus / Minus Query: 385 tcgaaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacgggg 444 ||||| ||||| || |||||||||||||| || ||||| |||| ||| ||||| || ||| Sbjct: 807 tcgaacgacctgacgtggatccatttcgtcgccgaccatttctcgccctcgatcaccggg 748 Query: 445 cagctcccgtg 455 ||||||||||| Sbjct: 747 cagctcccgtg 737
>gb|AY587604.1| Dianthus caryophyllus prolyl 4-hydroxylase (P4H1) mRNA, complete cds Length = 1201 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Minus Query: 388 aaggacctcacatggatccatttcgtggcggaccacttctggccttcgatgacggggcag 447 ||||||| ||||||||||||||||| || ||||| || | ||||| || || |||||| Sbjct: 845 aaggaccgaacatggatccatttcgttgctgaccatttttcaccttcaattacagggcag 786 Query: 448 ctcccgtgcaaact 461 || ||||||||||| Sbjct: 785 ctaccgtgcaaact 772
>ref|XM_469992.1| Oryza sativa (japonica cultivar-group), mRNA Length = 900 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437 ||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 725 acatggatccatttcgttgcagaccatttctcgccttcgat 685
>gb|AC108906.9| Oryza sativa chromosome 3 BAC OSJNBa0087C10 genomic sequence, complete sequence Length = 144487 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437 ||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 25531 acatggatccatttcgttgcagaccatttctcgccttcgat 25491
>dbj|AK059759.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-E11, full insert sequence Length = 1114 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Minus Query: 397 acatggatccatttcgtggcggaccacttctggccttcgat 437 ||||||||||||||||| || ||||| |||| ||||||||| Sbjct: 739 acatggatccatttcgttgcagaccatttctcgccttcgat 699
>gb|AY110013.1| Zea mays CL32377_1 mRNA sequence Length = 840 Score = 48.1 bits (24), Expect = 0.027 Identities = 42/48 (87%) Strand = Plus / Plus Query: 402 gatccatttcgtggcggaccacttctggccttcgatgacggggcagct 449 ||||||||| |||||| ||| |||| ||||| ||||||||||||||| Sbjct: 183 gatccatttggtggcgacccatttctcgcctttgatgacggggcagct 230
>gb|AC166079.2| Mus musculus BAC clone RP23-51L15 from chromosome 7, complete sequence Length = 193749 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 cagaaatactataaaagtatg 25 ||||||||||||||||||||| Sbjct: 174549 cagaaatactataaaagtatg 174529
>gb|AY505071.1| Newcastle disease virus strain gamefowl/U.S.(CA)/211472/02 RNA-dependent RNA polymerase (L) gene, complete cds Length = 6615 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccactt 94 ||||||||||||||||||||| Sbjct: 100 aaattaactgggctaccactt 120
>gb|AY562987.1| Newcastle disease virus isolate gamefowl/U.S.(CA)/211472/02, complete genome Length = 15192 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccactt 94 ||||||||||||||||||||| Sbjct: 8486 aaattaactgggctaccactt 8506
>gb|AC153802.1| Mus musculus 6 NOVECTOR RP24-79H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 189471 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 48 atatggacgtcacaagtccc 67 |||||||||||||||||||| Sbjct: 178657 atatggacgtcacaagtccc 178638
>gb|AC163608.2| Mus musculus chromosome 1, clone RP24-185M14, complete sequence Length = 161555 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccaaaagcatccagcaaaca 151 |||||||||||||||||||| Sbjct: 83539 ccaaaagcatccagcaaaca 83558
>emb|CT009748.6| Mouse DNA sequence from clone RP23-120N6 on chromosome 9, complete sequence Length = 235839 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aaagcatccagcaaacagcc 154 |||||||||||||||||||| Sbjct: 226428 aaagcatccagcaaacagcc 226409
>gb|AC117255.3| Mus musculus BAC clone RP24-481E4 from 3, complete sequence Length = 209706 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 agaagccaggtgcttccttc 270 |||||||||||||||||||| Sbjct: 132694 agaagccaggtgcttccttc 132675
>gb|AC113524.9| Mus musculus chromosome 6, clone RP23-120I17, complete sequence Length = 216807 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 atatggacgtcacaagtccc 67 |||||||||||||||||||| Sbjct: 157301 atatggacgtcacaagtccc 157320
>gb|AC101994.3| Mus musculus chromosome 1, clone RP24-406F14, complete sequence Length = 164170 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 ccaaaagcatccagcaaaca 151 |||||||||||||||||||| Sbjct: 120554 ccaaaagcatccagcaaaca 120573
>emb|BX004972.12| Zebrafish DNA sequence from clone CH211-166A6 in linkage group 8, complete sequence Length = 151374 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 aaagcatccagcaaacagcc 154 |||||||||||||||||||| Sbjct: 70728 aaagcatccagcaaacagcc 70709
>gb|AC010571.8| Drosophila melanogaster 3L BAC RP98-22O3 (Roswell Park Cancer Institute Drosophila BAC library) complete sequence Length = 169138 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gtatatggacagtatatgga 54 |||||||||||||||||||| Sbjct: 143021 gtatatggacagtatatgga 143040
>gb|AC010068.8| Drosophila melanogaster 3L BAC RP98-15K24 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 178607 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gtatatggacagtatatgga 54 |||||||||||||||||||| Sbjct: 5480 gtatatggacagtatatgga 5499
>gb|AC068442.7| Homo sapiens chromosome 17, clone RP11-187D20, complete sequence Length = 59731 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ggcacctcaagaaaaaacaa 217 |||||||||||||||||||| Sbjct: 28527 ggcacctcaagaaaaaacaa 28508
>dbj|AK156867.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830104B06 product:ancient ubiquitous protein, full insert sequence Length = 2398 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 241 ctcttcctgcagaagccagg 260 |||||||||||||||||||| Sbjct: 2175 ctcttcctgcagaagccagg 2194
>gb|AY935498.1| Newcastle disease virus isolate 99-1435, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935497.1| Newcastle disease virus isolate 99-1997PR-32, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935496.1| Newcastle disease virus isolate 99-0868lo, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935495.1| Newcastle disease virus isolate 99-0868hi, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935494.1| Newcastle disease virus isolate 99-0655, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935492.1| Newcastle disease virus isolate 98-1249, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935491.1| Newcastle disease virus isolate 98-1154, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY935489.1| Newcastle disease virus isolate 01-1108, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AY225110.1| Newcastle disease virus strain HB92 isolate V4, complete genome Length = 15186 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 aaattaactgggctaccact 93 |||||||||||||||||||| Sbjct: 8480 aaattaactgggctaccact 8499
>gb|AE003595.3| Drosophila melanogaster chromosome 3L, section 76 of 83 of the complete sequence Length = 294272 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 gtatatggacagtatatgga 54 |||||||||||||||||||| Sbjct: 210740 gtatatggacagtatatgga 210759
>emb|CT025661.8| Mouse DNA sequence from clone RP23-357H5 on chromosome 9, complete sequence Length = 219201 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ctcttcctgcagaagccagg 260 |||||||||||||||||||| Sbjct: 83763 ctcttcctgcagaagccagg 83744
>gb|AC005358.1|AC005358 Homo sapiens chromosome 17, clone hRPK.746_E_8, complete sequence Length = 184886 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ggcacctcaagaaaaaacaa 217 |||||||||||||||||||| Sbjct: 1933 ggcacctcaagaaaaaacaa 1914 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,110,605 Number of Sequences: 3902068 Number of extensions: 4110605 Number of successful extensions: 88840 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 88624 Number of HSP's gapped (non-prelim): 209 length of query: 487 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 465 effective length of database: 17,147,199,772 effective search space: 7973447893980 effective search space used: 7973447893980 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)