>VCAM1_RAT (P29534) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 32.0 bits (71), Expect = 0.85
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 188 GDMVLVRCYC*SVPECWILL 129
           GD V++ C C SVPE WI+L
Sbjct: 616 GDTVIISCTCGSVPEIWIIL 635

>LEU2_GLUOX (Q5FUG3) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 475

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 19/63 (30%), Positives = 30/63 (47%)
 Frame = +2

Query: 20  SLQNTGHRYFRQQLNYSPKSINRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQV 199
           SL +    YF  ++  + + I   +  W T P +  P+  S P P++   EP P    Q+
Sbjct: 269 SLASDDGAYFDTEVTLAAEEIIPSVT-WGTSPQNVLPIDGSVPSPSD---EPDPARAAQI 324

Query: 200 QRA 208
           QRA
Sbjct: 325 QRA 327

>VCAM1_MOUSE (P29533) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 188 GDMVLVRCYC*SVPECWILL 129
           GD V++ C C +VPE WI+L
Sbjct: 616 GDTVIISCTCGNVPETWIIL 635

>VCAM1_HUMAN (P19320) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
           (CD106 antigen) (INCAM-100)
          Length = 739

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 188 GDMVLVRCYC*SVPECWILL 129
           GD V++ C C +VPE WI+L
Sbjct: 616 GDTVIISCTCGNVPETWIIL 635

>CCDC9_HUMAN (Q9Y3X0) Coiled-coil domain-containing protein 9|
          Length = 531

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +2

Query: 50  RQQLNYSPKSINRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYP 187
           R Q   +P++ +   ++WET+  +A+P    TP PT+  + P   P
Sbjct: 351 RPQAKAAPRAYSDHDDRWETKEGAASPA-PETPQPTSPETSPKETP 395

>MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C|
          Length = 473

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 80  INRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYILNDTDL 241
           +N+R+N  ++    ATPV+ S   PT        YP       GT Y L+  DL
Sbjct: 278 LNQRINNSQSAQSLATPVV-SVATPTLPGQGMGGYPSAISTTYGTEYSLSSADL 330

>YL8J_SCHPO (Q9UTA1) Hypothetical zinc finger protein C25B8.19c in chromosome I|
          Length = 522

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 19/40 (47%), Positives = 21/40 (52%)
 Frame = +2

Query: 77  SINRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQ 196
           SINRR N  E  P S+ P   +T G   N     PYPHVQ
Sbjct: 8   SINRRNN--ENPPQSSLP---TTSGIVYNMFPACPYPHVQ 42

>MEF2C_MOUSE (Q8CFN5) Myocyte-specific enhancer factor 2C|
          Length = 474

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 80  INRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYILNDTDL 241
           +N+R+N  ++    ATPV+ S   PT        YP       GT Y L+  DL
Sbjct: 278 LNQRINNSQSAQSLATPVV-SVATPTLPGQGMGGYPSAISTTYGTEYSLSSADL 330

>CHEB1_PSEPU (O52262) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 374

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 83  NRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQRA 208
           NRRL  +      A PV +S+P P ++ + PAP       RA
Sbjct: 133 NRRLGSYARPAPVAAPVPASSPAPASSFASPAPARPAATARA 174

>VCAM1_CANFA (Q28260) Vascular cell adhesion protein 1 precursor (V-CAM 1)|
          Length = 739

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 188 GDMVLVRCYC*SVPECWILL 129
           GD V++ C C +VP+ WI+L
Sbjct: 616 GDTVIISCTCGNVPKTWIIL 635

>R1AB_CVPPU (Q9IW06) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6684

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 9/33 (27%), Positives = 22/33 (66%)
 Frame = -3

Query: 233  YHSVCNLYQHVGLGHGDMVLVRCYC*SVPECWI 135
            +H VCN++++  +  GD ++ RC   ++ +C++
Sbjct: 5782 HHEVCNIHRNEHVASGDAIMTRCL--AIHDCFV 5812

>YZLL_CAEEL (Q93847) Hypothetical WD-repeat protein K04G11.4|
          Length = 395

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 119 SATPVISSTPGPTNNNSEPAPYPHVQVQRAGTNYIL 226
           ++TP++SSTPGP + +S P P P+         Y L
Sbjct: 64  ASTPMLSSTPGP-SYSSAPTPMPNPSAANLWPTYKL 98

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +2

Query: 71  PKSINR--RLNKWETRPHSATPVISSTPGPTNNNSEPAP 181
           P S+ R  R++ WE  P  A    SS P P   N  P P
Sbjct: 338 PSSVFRPERVSPWELEPLVANSTPSSQPQPPQRNKRPRP 376

>R1AB_CVH22 (Q05002) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; 3C-like
            proteinase (EC 3.4
          Length = 6758

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 9/33 (27%), Positives = 23/33 (69%)
 Frame = -3

Query: 233  YHSVCNLYQHVGLGHGDMVLVRCYC*SVPECWI 135
            +H++CN++++  +  GD ++ RC   +V +C++
Sbjct: 5848 HHAICNVHRNEHVASGDAIMTRCL--AVYDCFV 5878

>RS10_LUMRU (O77302) 40S ribosomal protein S10|
          Length = 156

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = +2

Query: 23  LQNTGHRYFRQQLNYSPKSINRRLNKWETRPHSATPVISSTPGPTNNNSEPAPYPHVQVQ 202
           LQN G +Y R  L+  P+ +   L K +TRP +A P             E AP   V   
Sbjct: 68  LQNEGIQYLRDFLHLPPEIVPATL-KRQTRPEAARP----------RPKEGAPRAQVGED 116

Query: 203 RAG 211
           RAG
Sbjct: 117 RAG 119

>RAD5_GIBZE (Q4IJ84) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1154

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 17/47 (36%), Positives = 27/47 (57%)
 Frame = +2

Query: 41  RYFRQQLNYSPKSINRRLNKWETRPHSATPVISSTPGPTNNNSEPAP 181
           R+F  +    PK+   RL   + +P++A+P  SST  PT +  EP+P
Sbjct: 52  RFFENEDETVPKT--ERLETIDEKPNNASPKSSSTELPT-SQQEPSP 95


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,384,223
Number of Sequences: 219361
Number of extensions: 1206980
Number of successful extensions: 3602
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3593
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)