Clone Name | rbart33b07 |
---|---|
Clone Library Name | barley_pub |
>emb|AL139090.11| Human DNA sequence from clone RP11-12B13 on chromosome 6 Contains part of a novel gene, complete sequence Length = 128468 Score = 40.1 bits (20), Expect = 1.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 29 gggcattcatgatgcatcaaaaca 52 ||||||||||| |||||||||||| Sbjct: 125205 gggcattcatgctgcatcaaaaca 125182
>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 75001 Score = 40.1 bits (20), Expect = 1.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 aaatacataaataaggagaa 129 |||||||||||||||||||| Sbjct: 15221 aaatacataaataaggagaa 15202
>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome Length = 4222334 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 cccgaaattacggacgaac 158 ||||||||||||||||||| Sbjct: 1408323 cccgaaattacggacgaac 1408341
>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome Length = 4222645 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 140 cccgaaattacggacgaac 158 ||||||||||||||||||| Sbjct: 1409185 cccgaaattacggacgaac 1409203
>gb|AC153376.10| Mus musculus 6 BAC RP23-210L10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 203455 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 107 tacaaatacataaataaggagaa 129 |||||||| |||||||||||||| Sbjct: 20942 tacaaataaataaataaggagaa 20964
>emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chromosome 1 Contains a novel gene, complete sequence Length = 129044 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 116 ataaataaggagaacatacaaat 138 |||||||||||||| |||||||| Sbjct: 61260 ataaataaggagaaaatacaaat 61282
>ref|NM_001013283.1| Danio rerio zgc:113297 (zgc:113297), mRNA Length = 1155 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 actttggggcattcatgat 41 ||||||||||||||||||| Sbjct: 970 actttggggcattcatgat 988
>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete sequence Length = 94302 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 105 cctacaaatacataaataa 123 ||||||||||||||||||| Sbjct: 85770 cctacaaatacataaataa 85788
>gb|AC005906.1| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185952 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 112 atacataaataaggagaac 130 ||||||||||||||||||| Sbjct: 113881 atacataaataaggagaac 113899
>gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, complete sequence Length = 179499 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 116 ataaataaggagaacatacaaat 138 |||||||||||||| |||||||| Sbjct: 130200 ataaataaggagaaaatacaaat 130222
>gb|AY881998.1| Lactococcus lactis subsp. cremoris glnQP operon, complete sequence Length = 3227 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 ataaataaggagaacatac 134 ||||||||||||||||||| Sbjct: 2400 ataaataaggagaacatac 2418
>gb|AF188108.1|AF188108 Lactococcus lactis acid-resistant loci arl11, arl12, arl13 and arl14 Length = 5354 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 116 ataaataaggagaacatac 134 ||||||||||||||||||| Sbjct: 3100 ataaataaggagaacatac 3118
>ref|XM_684902.1| PREDICTED: Danio rerio similar to Tumor necrosis factor ligand superfamily member 10 (TNF-related apoptosis inducing ligand) (TRAIL protein) (LOC573101), mRNA Length = 1134 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 actttggggcattcatgat 41 ||||||||||||||||||| Sbjct: 975 actttggggcattcatgat 993
>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence Length = 184864 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 108 acaaatacataaataaggagaac 130 ||||| ||||||||||||||||| Sbjct: 113522 acaaaaacataaataaggagaac 113544
>emb|BX470076.3| Zebrafish DNA sequence from clone DKEY-103E21 in linkage group 5, complete sequence Length = 112637 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 actttggggcattcatgat 41 ||||||||||||||||||| Sbjct: 12199 actttggggcattcatgat 12181
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 105 cctacaaatacataaataaggag 127 |||||||||||||||| |||||| Sbjct: 42228372 cctacaaatacataaaaaaggag 42228394
>gb|AC009725.12|AC009725 Mus musculus chromosome , clone CT7-388N17, complete sequence Length = 145152 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 107 tacaaatacataaataaggagaa 129 |||||||| |||||||||||||| Sbjct: 97232 tacaaataaataaataaggagaa 97254
>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0401G10 Length = 160704 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 105 cctacaaatacataaataaggag 127 |||||||||||||||| |||||| Sbjct: 329 cctacaaatacataaaaaaggag 351
>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1294_F06 Length = 121088 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 105 cctacaaatacataaataaggag 127 |||||||||||||||| |||||| Sbjct: 101570 cctacaaatacataaaaaaggag 101592
>gb|AC092769.7| Homo sapiens chromosome 15, clone CTD-2315E11, complete sequence Length = 82168 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 110 aaatacataaataaggaga 128 ||||||||||||||||||| Sbjct: 57379 aaatacataaataaggaga 57361
>gb|BC090312.1| Danio rerio zgc:113297, mRNA (cDNA clone MGC:113297 IMAGE:7156672), complete cds Length = 1155 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 23 actttggggcattcatgat 41 ||||||||||||||||||| Sbjct: 970 actttggggcattcatgat 988
>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete sequence Length = 219072 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 108 acaaatacataaataagga 126 ||||||||||||||||||| Sbjct: 197380 acaaatacataaataagga 197398
>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence Length = 180605 Score = 38.2 bits (19), Expect = 7.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 38 tgatgcatcaaaacagtat 56 ||||||||||||||||||| Sbjct: 51122 tgatgcatcaaaacagtat 51140
>emb|AL935289.4| Zebrafish DNA sequence from clone CH211-232C12, complete sequence Length = 154174 Score = 38.2 bits (19), Expect = 7.7 Identities = 25/27 (92%) Strand = Plus / Plus Query: 110 aaatacataaataaggagaacatacaa 136 ||||| ||||||||||| ||||||||| Sbjct: 20509 aaataaataaataaggaaaacatacaa 20535
>gb|AC153844.3| Mus musculus 6 BAC RP23-376H18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 192895 Score = 38.2 bits (19), Expect = 7.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 107 tacaaatacataaataaggagaa 129 |||||||| |||||||||||||| Sbjct: 67211 tacaaataaataaataaggagaa 67189 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,084,446 Number of Sequences: 3902068 Number of extensions: 1084446 Number of successful extensions: 90435 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90355 Number of HSP's gapped (non-prelim): 80 length of query: 159 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 137 effective length of database: 17,147,199,772 effective search space: 2349166368764 effective search space used: 2349166368764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)