ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33b07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL139090.11| Human DNA sequence from clone RP11-12B13 on chr... 40 1.9
2gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Can... 40 1.9
3gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome 38 7.7
4gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome 38 7.7
5gb|AC153376.10| Mus musculus 6 BAC RP23-210L10 (Roswell Park Can... 38 7.7
6emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chro... 38 7.7
7ref|NM_001013283.1| Danio rerio zgc:113297 (zgc:113297), mRNA 38 7.7
8gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomi... 38 7.7
9gb|AC005906.1| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell P... 38 7.7
10gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, comp... 38 7.7
11gb|AY881998.1| Lactococcus lactis subsp. cremoris glnQP operon, ... 38 7.7
12gb|AF188108.1|AF188108 Lactococcus lactis acid-resistant loci ar... 38 7.7
13ref|XM_684902.1| PREDICTED: Danio rerio similar to Tumor necrosi... 38 7.7
14gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, c... 38 7.7
15emb|BX470076.3| Zebrafish DNA sequence from clone DKEY-103E21 in... 38 7.7
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
17gb|AC009725.12|AC009725 Mus musculus chromosome , clone CT7-388N... 38 7.7
18dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
19dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic D... 38 7.7
20gb|AC092769.7| Homo sapiens chromosome 15, clone CTD-2315E11, co... 38 7.7
21gb|BC090312.1| Danio rerio zgc:113297, mRNA (cDNA clone MGC:1132... 38 7.7
22emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chr... 38 7.7
23gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, co... 38 7.7
24emb|AL935289.4| Zebrafish DNA sequence from clone CH211-232C12, ... 38 7.7
25gb|AC153844.3| Mus musculus 6 BAC RP23-376H18 (Roswell Park Canc... 38 7.7

>emb|AL139090.11| Human DNA sequence from clone RP11-12B13 on chromosome 6 Contains part of
              a novel gene, complete sequence
          Length = 128468

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 29     gggcattcatgatgcatcaaaaca 52
              ||||||||||| ||||||||||||
Sbjct: 125205 gggcattcatgctgcatcaaaaca 125182



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>gb|AC093167.11| Homo sapiens Xp BAC RP11-593P4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75001

 Score = 40.1 bits (20), Expect = 1.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   aaatacataaataaggagaa 129
             ||||||||||||||||||||
Sbjct: 15221 aaatacataaataaggagaa 15202



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>gb|CP000002.2| Bacillus licheniformis ATCC 14580, complete genome
          Length = 4222334

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 140     cccgaaattacggacgaac 158
               |||||||||||||||||||
Sbjct: 1408323 cccgaaattacggacgaac 1408341



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>gb|AE017333.1| Bacillus licheniformis DSM 13, complete genome
          Length = 4222645

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 140     cccgaaattacggacgaac 158
               |||||||||||||||||||
Sbjct: 1409185 cccgaaattacggacgaac 1409203



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>gb|AC153376.10| Mus musculus 6 BAC RP23-210L10 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 203455

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   tacaaatacataaataaggagaa 129
             |||||||| ||||||||||||||
Sbjct: 20942 tacaaataaataaataaggagaa 20964



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>emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chromosome 1 Contains a
             novel gene, complete sequence
          Length = 129044

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 116   ataaataaggagaacatacaaat 138
             |||||||||||||| ||||||||
Sbjct: 61260 ataaataaggagaaaatacaaat 61282



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>ref|NM_001013283.1| Danio rerio zgc:113297 (zgc:113297), mRNA
          Length = 1155

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  actttggggcattcatgat 41
           |||||||||||||||||||
Sbjct: 970 actttggggcattcatgat 988



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>gb|AC007730.3| Arabidopsis thaliana chromosome 2 BAC T5M2 genomic sequence, complete
             sequence
          Length = 94302

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 105   cctacaaatacataaataa 123
             |||||||||||||||||||
Sbjct: 85770 cctacaaatacataaataa 85788



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>gb|AC005906.1| Homo sapiens 12p13.3 BAC RPCI11-429A20 (Roswell Park Cancer Institute
              Human BAC Library) complete sequence
          Length = 185952

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 112    atacataaataaggagaac 130
              |||||||||||||||||||
Sbjct: 113881 atacataaataaggagaac 113899



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>gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, complete sequence
          Length = 179499

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 116    ataaataaggagaacatacaaat 138
              |||||||||||||| ||||||||
Sbjct: 130200 ataaataaggagaaaatacaaat 130222



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>gb|AY881998.1| Lactococcus lactis subsp. cremoris glnQP operon, complete sequence
          Length = 3227

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  ataaataaggagaacatac 134
            |||||||||||||||||||
Sbjct: 2400 ataaataaggagaacatac 2418



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>gb|AF188108.1|AF188108 Lactococcus lactis acid-resistant loci arl11, arl12, arl13 and arl14
          Length = 5354

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 116  ataaataaggagaacatac 134
            |||||||||||||||||||
Sbjct: 3100 ataaataaggagaacatac 3118



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>ref|XM_684902.1| PREDICTED: Danio rerio similar to Tumor necrosis factor ligand
           superfamily member 10 (TNF-related apoptosis inducing
           ligand) (TRAIL protein) (LOC573101), mRNA
          Length = 1134

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  actttggggcattcatgat 41
           |||||||||||||||||||
Sbjct: 975 actttggggcattcatgat 993



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>gb|AC013553.14| Homo sapiens chromosome 15, clone RP11-325L12, complete sequence
          Length = 184864

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 108    acaaatacataaataaggagaac 130
              ||||| |||||||||||||||||
Sbjct: 113522 acaaaaacataaataaggagaac 113544



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>emb|BX470076.3| Zebrafish DNA sequence from clone DKEY-103E21 in linkage group 5,
             complete sequence
          Length = 112637

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 23    actttggggcattcatgat 41
             |||||||||||||||||||
Sbjct: 12199 actttggggcattcatgat 12181



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 105      cctacaaatacataaataaggag 127
                |||||||||||||||| ||||||
Sbjct: 42228372 cctacaaatacataaaaaaggag 42228394



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>gb|AC009725.12|AC009725 Mus musculus chromosome , clone CT7-388N17, complete sequence
          Length = 145152

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 107   tacaaatacataaataaggagaa 129
             |||||||| ||||||||||||||
Sbjct: 97232 tacaaataaataaataaggagaa 97254



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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
           PAC clone:P0401G10
          Length = 160704

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 105 cctacaaatacataaataaggag 127
           |||||||||||||||| ||||||
Sbjct: 329 cctacaaatacataaaaaaggag 351



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>dbj|AP004326.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1294_F06
          Length = 121088

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 105    cctacaaatacataaataaggag 127
              |||||||||||||||| ||||||
Sbjct: 101570 cctacaaatacataaaaaaggag 101592



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>gb|AC092769.7| Homo sapiens chromosome 15, clone CTD-2315E11, complete sequence
          Length = 82168

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 110   aaatacataaataaggaga 128
             |||||||||||||||||||
Sbjct: 57379 aaatacataaataaggaga 57361



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>gb|BC090312.1| Danio rerio zgc:113297, mRNA (cDNA clone MGC:113297 IMAGE:7156672),
           complete cds
          Length = 1155

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 23  actttggggcattcatgat 41
           |||||||||||||||||||
Sbjct: 970 actttggggcattcatgat 988



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>emb|CR974583.24| Mouse DNA sequence from clone RP23-118G7 on chromosome 12, complete
              sequence
          Length = 219072

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 108    acaaatacataaataagga 126
              |||||||||||||||||||
Sbjct: 197380 acaaatacataaataagga 197398



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>gb|AC117728.10| Mus musculus chromosome 6, clone RP24-126C21, complete sequence
          Length = 180605

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 38    tgatgcatcaaaacagtat 56
             |||||||||||||||||||
Sbjct: 51122 tgatgcatcaaaacagtat 51140



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>emb|AL935289.4| Zebrafish DNA sequence from clone CH211-232C12, complete sequence
          Length = 154174

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 110   aaatacataaataaggagaacatacaa 136
             ||||| ||||||||||| |||||||||
Sbjct: 20509 aaataaataaataaggaaaacatacaa 20535



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>gb|AC153844.3| Mus musculus 6 BAC RP23-376H18 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 192895

 Score = 38.2 bits (19), Expect = 7.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 107   tacaaatacataaataaggagaa 129
             |||||||| ||||||||||||||
Sbjct: 67211 tacaaataaataaataaggagaa 67189


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,084,446
Number of Sequences: 3902068
Number of extensions: 1084446
Number of successful extensions: 90435
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90355
Number of HSP's gapped (non-prelim): 80
length of query: 159
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 137
effective length of database: 17,147,199,772
effective search space: 2349166368764
effective search space used: 2349166368764
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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