Clone Name | rbart33b06 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | IN21_MAIZE (P49248) IN2-1 protein | 130 | 1e-30 | 2 | AFAM_HUMAN (P43652) Afamin precursor (Alpha-albumin) (Alpha-Alb) | 32 | 0.62 | 3 | DPOE_YARLI (Q6C4J0) DNA polymerase epsilon, catalytic subunit A ... | 30 | 3.1 | 4 | ADA22_MOUSE (Q9R1V6) ADAM 22 precursor (A disintegrin and metall... | 30 | 4.0 | 5 | SYV_PHOPR (Q6LUW1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... | 29 | 6.8 |
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>IN21_MAIZE (P49248) IN2-1 protein| Length = 243 Score = 130 bits (328), Expect = 1e-30 Identities = 62/81 (76%), Positives = 70/81 (86%) Frame = -2 Query: 462 LSKFSDGPFFLGQFSLVDIAYVTILERVQIYYSHLRNYEITKDRPNLERYTEDMNKIEAY 283 LSKF DGPFFLGQFSL D+AYVTILERVQIYYSHLRNY+I + RPNL+ + ++MNKIEAY Sbjct: 163 LSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEFIDEMNKIEAY 222 Query: 282 KQTKNAPLTLLEAAKRHLKIA 220 QTKN PL LL+ AK HLKIA Sbjct: 223 AQTKNDPLFLLDLAKSHLKIA 243
>AFAM_HUMAN (P43652) Afamin precursor (Alpha-albumin) (Alpha-Alb)| Length = 599 Score = 32.3 bits (72), Expect = 0.62 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%) Frame = -2 Query: 411 DIAYVTILERVQIYYSHLRNYEITKDRPNLERYTEDMNKIEAYKQTKNAPLTLLEAAKRH 232 D++ +L VQIY LRN T++ P RY ED + +T L +++ +H Sbjct: 364 DLSIPELLRIVQIYKDLLRNCCNTENPPGCYRYAED-----KFNETTEKSLKMVQQECKH 418 Query: 231 LKIA*RSGDVAKDNGRY-----VGTVAPELAKTE 145 + ++ KD +Y + +AP+L+ E Sbjct: 419 FQ------NLGKDGLKYHYLIRLTKIAPQLSTEE 446
>DPOE_YARLI (Q6C4J0) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)| (DNA polymerase II subunit A) Length = 2183 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/27 (44%), Positives = 20/27 (74%) Frame = +1 Query: 379 NPLQDRHVRNIHQAKLAKEERAVAELG 459 +PL+D HV I++A ++ + RA+ ELG Sbjct: 1406 SPLKDPHVTKIYEADVSPDSRALIELG 1432
>ADA22_MOUSE (Q9R1V6) ADAM 22 precursor (A disintegrin and metalloproteinase| domain 22) Length = 904 Score = 29.6 bits (65), Expect = 4.0 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +3 Query: 246 LQARLAGHFWFACMLRSCSCPRCISQGWACL 338 +QA A FW C+L +C RC G A L Sbjct: 1 MQAAAAASFWLLCVLGTCPLARCGRAGVASL 31
>SYV_PHOPR (Q6LUW1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)| (ValRS) Length = 953 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 345 ITKDRPNLERYTEDMNKIEAYKQT 274 ITK+R LE Y E + K+EA K+T Sbjct: 926 ITKEREKLEGYQETLVKLEAQKET 949 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,163,136 Number of Sequences: 219361 Number of extensions: 1320296 Number of successful extensions: 3816 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3719 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3815 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)