ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33b06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Y17386.1|TAE17386 Triticum aestivum mRNA for putative In2.1-... 452 e-124
2emb|X58573.1|ZMIN21 Maize In2-1 mRNA 121 2e-24
3ref|XM_493845.1| Oryza sativa (japonica cultivar-group), mRNA 109 8e-21
4gb|AF237487.2|AF237487 Oryza sativa XIG mRNA, complete cds 109 8e-21
5ref|XM_493844.1| Oryza sativa (japonica cultivar-group), mRNA 68 3e-08
6dbj|AK065887.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
7dbj|AK061849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 64 4e-07
9gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genom... 64 4e-07
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 64 4e-07
11gb|AY111952.1| Zea mays CL5438_1 mRNA sequence 64 4e-07
12ref|XM_493843.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
13gb|AY332468.1| Oryza sativa (japonica cultivar-group) glutathion... 48 0.026
14gb|AF249913.1|AF249913 Glycine max In2-1 protein mRNA, complete cds 46 0.10
15dbj|AB087837.1| Pisum sativum GST mRNA for glutathione S-transfe... 46 0.10
16gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 m... 44 0.40
17emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g... 44 0.40
18gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, com... 42 1.6
19gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, com... 42 1.6
20gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Can... 42 1.6
21gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, co... 42 1.6
22dbj|BS000063.1| Pan troglodytes chromosome 22 clone:PTB-428P03, ... 42 1.6
23dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, ... 42 1.6
24gb|AF240629.1|AF240629 Homo sapiens chromosome 21 map 21q21 clon... 42 1.6
25dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.6
26emb|AL109772.3|HS21N069 Homo sapiens chromosome 21 sequence from... 42 1.6
27gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, co... 40 6.3
28gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, comp... 40 6.3
29gb|AC169510.1| Mus musculus BAC clone RP23-121E6 from chromosome... 40 6.3
30gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, co... 40 6.3
31gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map... 40 6.3
32emb|CT009532.6| Mouse DNA sequence from clone RP23-122B16 on chr... 40 6.3
33ref|XM_761786.1| Giardia lamblia ATCC 50803 variant-specific sur... 40 6.3
34gb|DQ450070.1| Arachis hypogaea clone 7A4R17G putative IN2-1 pro... 40 6.3
35emb|CR378672.1| Photobacterium profundum SS9; segment 10/12 40 6.3
36emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 i... 40 6.3
37gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Can... 40 6.3
38gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complet... 40 6.3
39gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, co... 40 6.3
40gb|AC025524.9| Homo sapiens chromosome 8, clone RP11-705O24, com... 40 6.3
41gb|AC024121.5| Homo sapiens chromosome 5 clone CTB-2J5, complete... 40 6.3
42gb|AC022449.5| Homo sapiens chromosome 5 clone RP11-93O7, comple... 40 6.3
43gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 6.3
44gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643... 40 6.3
45emb|CT737307.2| CH251-89L9, complete sequence 40 6.3
46gb|DQ294619.1| Arachis hypogaea IN2-1 protein-like mRNA, partial... 40 6.3
47dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone... 40 6.3
48emb|AL137390.1|HSM802081 Homo sapiens mRNA; cDNA DKFZp434P0626 (... 40 6.3 
>emb|Y17386.1|TAE17386 Triticum aestivum mRNA for putative In2.1-like protein
          Length = 1031

 Score =  452 bits (228), Expect = e-124
 Identities = 270/284 (95%)
 Strand = Plus / Minus

                                                                       
Query: 183 agcgaccgttatccttggcgacatcaccgcttcttcaagcaatcttgagatgcctcttgg 242
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 801 agcgaccgttatccttggcgacagcaccgcttcttcaagcaatcttgagatgcctcttgg 742

                                                                       
Query: 243 cagcttcaagcaaggttagcggggcatttttggtttgcttgtatgcttcgatcttgttca 302
           |||| ||||||||||  |||||| |||||||||||||||| || ||||||||||||||||
Sbjct: 741 cagcatcaagcaaggccagcgggacatttttggtttgcttatacgcttcgatcttgttca 682

                                                                       
Query: 303 tgtcctcggtgtatctctcaaggttgggcctgtctttggtgatctcatagttcctcaggt 362
           | ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 681 tctcctcggtgtatctctcaaggttgggcctgtctttggcgatctcgtagttcctcaggt 622

                                                                       
Query: 363 gggaatagtatatctgaaccctctccaagatcgtcacgtacgcaatatccaccaagctaa 422
             || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 tagagtagtatatctgaaccctctccaagatcgtcacgtacgcaatgtccaccaagctaa 562

                                                       
Query: 423 attggccaaggaagaacgggccgtcgctgaacttggacagggca 466
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attggccaaggaagaacgggccgtcgctgaacttggacagggca 518



 Score =  109 bits (55), Expect = 8e-21
 Identities = 73/79 (92%)
 Strand = Plus / Minus

                                                                       
Query: 8   agatggagtatgttattgttttataaaaagcatagcccttacaggttacaacatgaagtc 67
           ||||||||||  ||||||||| |||||||||||||||||||||||||||||||||  |||
Sbjct: 978 agatggagtacattattgtttcataaaaagcatagcccttacaggttacaacatggtgtc 919

                              
Query: 68  acttattgggaagaaaaca 86
           | |||||||||||||||||
Sbjct: 918 atttattgggaagaaaaca 900



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 109 tgataatggtgggaaaagaagccccag 135
           |||||||||||| ||||||||||||||
Sbjct: 885 tgataatggtggcaaaagaagccccag 859
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>emb|X58573.1|ZMIN21 Maize In2-1 mRNA
          Length = 906

 Score =  121 bits (61), Expect = 2e-24
 Identities = 145/173 (83%)
 Strand = Plus / Minus

                                                                       
Query: 287 gcttcgatcttgttcatgtcctcggtgtatctctcaaggttgggcctgtctttggtgatc 346
           ||||||||||||||||| || ||| || ||  ||  |||||||||||| ||| || ||| 
Sbjct: 682 gcttcgatcttgttcatctcgtcgatgaattcctggaggttgggcctgccttgggcgatg 623

                                                                       
Query: 347 tcatagttcctcaggtgggaatagtatatctgaaccctctccaagatcgtcacgtacgca 406
           || |||||||| || ||||||||||||||||||||||| ||||  ||||| |||||||| 
Sbjct: 622 tcgtagttcctaagatgggaatagtatatctgaaccctttccagaatcgtaacgtacgct 563

                                                                
Query: 407 atatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttgga 459
           | |||| ||||||| |||||||| |||||||| || ||||||  |||||||||
Sbjct: 562 acatccgccaagctgaattggcctaggaagaagggcccgtcgtcgaacttgga 510
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>ref|XM_493845.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 796

 Score =  109 bits (55), Expect = 8e-21
 Identities = 169/207 (81%)
 Strand = Plus / Minus

                                                                       
Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319
           |||||| ||||||| |||||  | |||||||||||  |||| || |||||| || || ||
Sbjct: 717 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 658

                                                                       
Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379
           || |||||||||| | | ||||||||||| || ||||| |  || || ||||||||||||
Sbjct: 657 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 598

                                                                       
Query: 380 accctctccaagatcgtcacgtacgcaatatccaccaagctaaattggccaaggaagaac 439
           | ||| || |  || ||||| |||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 597 atcctttcaataattgtcacatacgcaatgtccaccaagctaaattgtccaaggaagaat 538

                                      
Query: 440 gggccgtcgctgaacttggacagggca 466
           || || || | |||||| |||||||||
Sbjct: 537 ggaccatcaccgaacttcgacagggca 511
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>gb|AF237487.2|AF237487 Oryza sativa XIG mRNA, complete cds
          Length = 1058

 Score =  109 bits (55), Expect = 8e-21
 Identities = 169/207 (81%)
 Strand = Plus / Minus

                                                                       
Query: 260 agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319
           |||||| ||||||| |||||  | |||||||||||  |||| || |||||| || || ||
Sbjct: 718 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 659

                                                                       
Query: 320 tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379
           || |||||||||| | | ||||||||||| || ||||| |  || || ||||||||||||
Sbjct: 658 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 599

                                                                       
Query: 380 accctctccaagatcgtcacgtacgcaatatccaccaagctaaattggccaaggaagaac 439
           | ||| || |  || ||||| |||||||| ||||||||||||||||| ||||||||||| 
Sbjct: 598 atcctttcaataattgtcacatacgcaatgtccaccaagctaaattgtccaaggaagaat 539

                                      
Query: 440 gggccgtcgctgaacttggacagggca 466
           || || || | |||||| |||||||||
Sbjct: 538 ggaccatcaccgaacttcgacagggca 512
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>ref|XM_493844.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1006

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460
           |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |||
Sbjct: 551 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 492

             
Query: 461 ag 462
           ||
Sbjct: 491 ag 490
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>dbj|AK065887.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013044J05, full
           insert sequence
          Length = 1252

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460
           |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |||
Sbjct: 724 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 665

             
Query: 461 ag 462
           ||
Sbjct: 664 ag 663
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>dbj|AK061849.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F06, full
           insert sequence
          Length = 1029

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggccgtcgctgaacttggac 460
           |||||||| ||||||||||| || |||||||||||||| ||||| ||| ||||||| |||
Sbjct: 600 tacgcaatgtccaccaagctgaactggccaaggaagaatgggccatcgttgaactttgac 541

             
Query: 461 ag 462
           ||
Sbjct: 540 ag 539
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 125/156 (80%)
 Strand = Plus / Plus

                                                                           
Query: 260     agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319
               |||||| ||||||| |||||  | |||||||||||  |||| || |||||| || || ||
Sbjct: 9689658 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 9689717

                                                                           
Query: 320     tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379
               || |||||||||| | | ||||||||||| || ||||| |  || || ||||||||||||
Sbjct: 9689718 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 9689777

                                                   
Query: 380     accctctccaagatcgtcacgtacgcaatatccacc 415
               | ||| || |  || ||||| |||||||| ||||||
Sbjct: 9689778 atcctttcaataattgtcacatacgcaatgtccacc 9689813



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 413     accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggca 466
               |||||||||||||| ||||||||||| || || || | |||||| |||||||||
Sbjct: 9690392 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggca 9690445



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 413     accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacag 462
               |||||||| || |||||||||||||| ||||| ||| ||||||| |||||
Sbjct: 9685184 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacag 9685233



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 419     ctaaattggccaaggaagaacgggcc 444
               |||||||||||||||||||| |||||
Sbjct: 9681172 ctaaattggccaaggaagaatgggcc 9681197
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>gb|AC084405.6| Oryza sativa chromosome 3 BAC OSJNBa0044H10 genomic sequence, complete
              sequence
          Length = 165113

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 125/156 (80%)
 Strand = Plus / Plus

                                                                          
Query: 260    agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319
              |||||| ||||||| |||||  | |||||||||||  |||| || |||||| || || ||
Sbjct: 110557 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 110616

                                                                          
Query: 320    tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379
              || |||||||||| | | ||||||||||| || ||||| |  || || ||||||||||||
Sbjct: 110617 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 110676

                                                  
Query: 380    accctctccaagatcgtcacgtacgcaatatccacc 415
              | ||| || |  || ||||| |||||||| ||||||
Sbjct: 110677 atcctttcaataattgtcacatacgcaatgtccacc 110712



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                    
Query: 413    accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggca 466
              |||||||||||||| ||||||||||| || || || | |||||| |||||||||
Sbjct: 111291 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggca 111344



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 413    accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacag 462
              |||||||| || |||||||||||||| ||||| ||| ||||||| |||||
Sbjct: 106083 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacag 106132



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 419    ctaaattggccaaggaagaacgggcc 444
              |||||||||||||||||||| |||||
Sbjct: 102071 ctaaattggccaaggaagaatgggcc 102096
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 125/156 (80%)
 Strand = Plus / Plus

                                                                           
Query: 260     agcggggcatttttggtttgcttgtatgcttcgatcttgttcatgtcctcggtgtatctc 319
               |||||| ||||||| |||||  | |||||||||||  |||| || |||||| || || ||
Sbjct: 9687779 agcgggtcattttttgtttgtgtatatgcttcgattctgttgatttcctcgatgaatttc 9687838

                                                                           
Query: 320     tcaaggttgggcctgtctttggtgatctcatagttcctcaggtgggaatagtatatctga 379
               || |||||||||| | | ||||||||||| || ||||| |  || || ||||||||||||
Sbjct: 9687839 tcgaggttgggccggccattggtgatctcgtatttccttatatgagagtagtatatctga 9687898

                                                   
Query: 380     accctctccaagatcgtcacgtacgcaatatccacc 415
               | ||| || |  || ||||| |||||||| ||||||
Sbjct: 9687899 atcctttcaataattgtcacatacgcaatgtccacc 9687934



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                     
Query: 413     accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacagggca 466
               |||||||||||||| ||||||||||| || || || | |||||| |||||||||
Sbjct: 9688513 accaagctaaattgtccaaggaagaatggaccatcaccgaacttcgacagggca 9688566



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                 
Query: 413     accaagctaaattggccaaggaagaacgggccgtcgctgaacttggacag 462
               |||||||| || |||||||||||||| ||||| ||| ||||||| |||||
Sbjct: 9683305 accaagctgaactggccaaggaagaatgggccatcgttgaactttgacag 9683354



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 419     ctaaattggccaaggaagaacgggcc 444
               |||||||||||||||||||| |||||
Sbjct: 9679293 ctaaattggccaaggaagaatgggcc 9679318
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>gb|AY111952.1| Zea mays CL5438_1 mRNA sequence
          Length = 1008

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 131/164 (79%)
 Strand = Plus / Minus

                                                                       
Query: 290 tcgatcttgttcatgtcctcggtgtatctctcaaggttgggcctgtctttggtgatctca 349
           |||||||||||||  |||||| || || ||| ||||||||| ||| | || ||||| |||
Sbjct: 676 tcgatcttgttcacttcctcgatgaatttctgaaggttgggtctgccctttgtgatgtca 617

                                                                       
Query: 350 tagttcctcaggtgggaatagtatatctgaaccctctccaagatcgtcacgtacgcaata 409
           |||||| | | |  |||||||  |||||||| |||||| | || ||  || |||||||  
Sbjct: 616 tagttctttatggtggaatagagtatctgaagcctctcgatgaacggtacatacgcaacg 557

                                                       
Query: 410 tccaccaagctaaattggccaaggaagaacgggccgtcgctgaa 453
           |||||||  || || || ||||||||||||||||||||| ||||
Sbjct: 556 tccaccagactgaactgaccaaggaagaacgggccgtcgttgaa 513
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>ref|XM_493843.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggcc 444
           |||||||| || ||||  |||||||||||||||||||| |||||
Sbjct: 530 tacgcaatgtcaaccagactaaattggccaaggaagaatgggcc 487
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>gb|AY332468.1| Oryza sativa (japonica cultivar-group) glutathione S-transferase
           (GST) mRNA, complete cds
          Length = 1092

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                       
Query: 401 tacgcaatatccaccaagctaaattggccaaggaagaacgggcc 444
           |||||||| || ||||  |||||||||||||||||||| |||||
Sbjct: 568 tacgcaatgtcaaccagactaaattggccaaggaagaatgggcc 525
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>gb|AF249913.1|AF249913 Glycine max In2-1 protein mRNA, complete cds
          Length = 1024

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 404 gcaatatccaccaagctaaattggccaaggaagaa 438
           |||||||||||||| || ||||||||||| |||||
Sbjct: 560 gcaatatccaccaaactgaattggccaagcaagaa 526
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>dbj|AB087837.1| Pisum sativum GST mRNA for glutathione S-transferase, partial cds
          Length = 990

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 398 acgtacgcaatatccaccaagctaaattggccaag 432
           |||||||||||||||||||| || ||||| |||||
Sbjct: 556 acgtacgcaatatccaccaaactgaattgaccaag 522
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>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence
          Length = 185566

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 86    atataaaagtaaataggtaatt 107
             ||||||||||||||||||||||
Sbjct: 17782 atataaaagtaaataggtaatt 17803
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>emb|CT027663.2| Medicago truncatula chromosome 5 clone mth2-139g23, COMPLETE SEQUENCE
          Length = 133229

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 87    tataaaagtaaataggtaatta 108
             ||||||||||||||||||||||
Sbjct: 31392 tataaaagtaaataggtaatta 31371
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>gb|AC102931.10| Mus musculus chromosome 7, clone RP24-221B5, complete sequence
          Length = 164298

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 91    aaagtaaataggtaattatgataat 115
             |||||||||||||||| ||||||||
Sbjct: 73622 aaagtaaataggtaataatgataat 73646
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>gb|AC158575.3| Mus musculus chromosome 7, clone RP23-275H16, complete sequence
          Length = 221489

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     aaagtaaataggtaattatgataat 115
              |||||||||||||||| ||||||||
Sbjct: 190070 aaagtaaataggtaataatgataat 190046
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>gb|AC026374.19| Homo sapiens 3 BAC RP11-336E10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75385

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    agtatgttattgttttataaa 34
             |||||||||||||||||||||
Sbjct: 13819 agtatgttattgttttataaa 13799
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>gb|AC090984.5| Homo sapiens chromosome 15, clone RP11-500C12, complete sequence
          Length = 190664

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 87     tataaaagtaaataggtaattatga 111
              ||||||||||||||||| |||||||
Sbjct: 145698 tataaaagtaaataggtcattatga 145674
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>dbj|BS000063.1| Pan troglodytes chromosome 22 clone:PTB-428P03, map 22, complete
             sequences
          Length = 136131

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    agaaaacatataaaagtaaataggt 103
             |||||| ||||||||||||||||||
Sbjct: 25037 agaaaaaatataaaagtaaataggt 25013
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>dbj|BS000062.1| Pan troglodytes chromosome 22 clone:PTB-045C17, map 22, complete
              sequences
          Length = 171187

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 79     agaaaacatataaaagtaaataggt 103
              |||||| ||||||||||||||||||
Sbjct: 135925 agaaaaaatataaaagtaaataggt 135901
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>gb|AF240629.1|AF240629 Homo sapiens chromosome 21 map 21q21 clone B47C12, complete sequence
          Length = 151696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 79    agaaaacatataaaagtaaataggt 103
             |||||| ||||||||||||||||||
Sbjct: 23906 agaaaaaatataaaagtaaataggt 23882
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>dbj|AP001679.1| Homo sapiens genomic DNA, chromosome 21q, section 23/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 79     agaaaacatataaaagtaaataggt 103
              |||||| ||||||||||||||||||
Sbjct: 209799 agaaaaaatataaaagtaaataggt 209775
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>emb|AL109772.3|HS21N069 Homo sapiens chromosome 21 sequence from cosmid ICRFc103 9N06 map 21q21
             region D21S189-LA297, complete sequence
          Length = 39175

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 79    agaaaacatataaaagtaaataggt 103
             |||||| ||||||||||||||||||
Sbjct: 19134 agaaaaaatataaaagtaaataggt 19158
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>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence
          Length = 211052

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 333    tgtctttggtgatctcatag 352
              ||||||||||||||||||||
Sbjct: 134001 tgtctttggtgatctcatag 134020
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>gb|AC161352.7| Mus musculus chromosome 3, clone RP23-129N8, complete sequence
          Length = 192165

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 49     caggttacaacatgaagtcactta 72
              |||| |||||||||||||||||||
Sbjct: 126814 caggatacaacatgaagtcactta 126837
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>gb|AC169510.1| Mus musculus BAC clone RP23-121E6 from chromosome 14, complete sequence
          Length = 214403

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 375    tctgaaccctctccaagatc 394
              ||||||||||||||||||||
Sbjct: 206022 tctgaaccctctccaagatc 206041
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>gb|AC136901.17| Mus musculus chromosome 3, clone RP24-510H14, complete sequence
          Length = 129686

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 49     caggttacaacatgaagtcactta 72
              |||| |||||||||||||||||||
Sbjct: 107647 caggatacaacatgaagtcactta 107624
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>gb|AC150208.1| Pan troglodytes chromosome X clone PTB-043C05 map human ortholog p21.3,
             complete sequence
          Length = 194447

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   atttttggtttgcttgtatg 287
             ||||||||||||||||||||
Sbjct: 13871 atttttggtttgcttgtatg 13852
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>emb|CT009532.6| Mouse DNA sequence from clone RP23-122B16 on chromosome 14, complete
             sequence
          Length = 187658

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 375   tctgaaccctctccaagatc 394
             ||||||||||||||||||||
Sbjct: 75980 tctgaaccctctccaagatc 75961
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>ref|XM_761786.1| Giardia lamblia ATCC 50803 variant-specific surface protein
           (GLP_244_3196_1289) partial mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 1   aaaaacaagatggagtatgt 20
           ||||||||||||||||||||
Sbjct: 206 aaaaacaagatggagtatgt 225
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>gb|DQ450070.1| Arachis hypogaea clone 7A4R17G putative IN2-1 protein mRNA, partial
           cds
          Length = 625

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 407 atatccaccaagctaaattggccaaggaagaa 438
           ||||||||| |||| ||||| |||||||||||
Sbjct: 224 atatccacccagctgaattgaccaaggaagaa 193
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>emb|CR378672.1| Photobacterium profundum SS9; segment 10/12
          Length = 348526

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   acatataaaagtaaataggt 103
            ||||||||||||||||||||
Sbjct: 9624 acatataaaagtaaataggt 9643
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>emb|CR407702.15| Zebrafish DNA sequence from clone DKEY-171M10 in linkage group 17,
            complete sequence
          Length = 155486

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   atgttattgttttataaaaa 36
            ||||||||||||||||||||
Sbjct: 1192 atgttattgttttataaaaa 1173
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>gb|AC079904.31| Homo sapiens 12 BAC RP11-84J24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 197964

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 135    gtgataagagttcagtcttc 154
              ||||||||||||||||||||
Sbjct: 169298 gtgataagagttcagtcttc 169317
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>gb|AC104137.5| Homo sapiens BAC clone RP11-807H7 from 4, complete sequence
          Length = 195930

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    ttattgttttataaaaagca 39
             ||||||||||||||||||||
Sbjct: 23769 ttattgttttataaaaagca 23788
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>gb|AC026583.10| Homo sapiens chromosome 15, clone RP11-20C17, complete sequence
          Length = 175472

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     tgttattgttttataaaaag 37
              ||||||||||||||||||||
Sbjct: 123547 tgttattgttttataaaaag 123528
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>gb|AC025524.9| Homo sapiens chromosome 8, clone RP11-705O24, complete sequence
          Length = 165720

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    tacaacatgaagtcacttat 73
             ||||||||||||||||||||
Sbjct: 58209 tacaacatgaagtcacttat 58190
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>gb|AC024121.5| Homo sapiens chromosome 5 clone CTB-2J5, complete sequence
          Length = 132728

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   acaacatgaagtcacttatt 74
            ||||||||||||||||||||
Sbjct: 2277 acaacatgaagtcacttatt 2258
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>gb|AC022449.5| Homo sapiens chromosome 5 clone RP11-93O7, complete sequence
          Length = 161121

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 55    acaacatgaagtcacttatt 74
             ||||||||||||||||||||
Sbjct: 90217 acaacatgaagtcacttatt 90198
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 277     ttgcttgtatgcttcgatcttgttcatg 304
               |||||| |||||||||||||||| ||||
Sbjct: 2965746 ttgcttatatgcttcgatcttgtccatg 2965719
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>gb|AC084759.2|AC084759 Homo sapiens chromosome 15 clone RP11-643A5 map 15q21.3, complete
             sequence
          Length = 173921

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   gtgataagagttcagtcttc 154
             ||||||||||||||||||||
Sbjct: 15806 gtgataagagttcagtcttc 15787
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>emb|CT737307.2| CH251-89L9, complete sequence
          Length = 180080

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   atttttggtttgcttgtatg 287
             ||||||||||||||||||||
Sbjct: 94674 atttttggtttgcttgtatg 94693
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>gb|DQ294619.1| Arachis hypogaea IN2-1 protein-like mRNA, partial sequence
          Length = 425

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 407 atatccaccaagctaaattggccaaggaagaa 438
           ||||||||| |||| ||||| |||||||||||
Sbjct: 256 atatccacccagctgaattgaccaaggaagaa 225
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>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060,
            complete sequence
          Length = 123078

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 105  attatgataatggtgggaaa 124
            ||||||||||||||||||||
Sbjct: 8449 attatgataatggtgggaaa 8430
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>emb|AL137390.1|HSM802081 Homo sapiens mRNA; cDNA DKFZp434P0626 (from clone DKFZp434P0626)
          Length = 1202

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 54  tacaacatgaagtcacttat 73
           ||||||||||||||||||||
Sbjct: 117 tacaacatgaagtcacttat 136


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,477,987
Number of Sequences: 3902068
Number of extensions: 4477987
Number of successful extensions: 94591
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94402
Number of HSP's gapped (non-prelim): 187
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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