ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
114KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor 56 2e-08
2CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor ... 54 7e-08
3PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein 40 0.002
4HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly... 34 0.078
5C1TC_RAT (P27653) C-1-tetrahydrofolate synthase, cytoplasmic (C1... 28 4.3
6C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (... 28 4.3
7C1TC_HUMAN (P11586) C-1-tetrahydrofolate synthase, cytoplasmic (... 28 4.3
8L_VSVSJ (P03523) Large structural protein (L protein) (Transcrip... 28 5.6
9FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc recep... 28 5.6

>14KD_DAUCA (P14009) 14 kDa proline-rich protein DC2.15 precursor|
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 25/36 (69%), Positives = 30/36 (83%)
 Frame = -3

Query: 352 CTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMC 245
           CTAIKA++LG ++NLPI LSL+LN CGK VP GF C
Sbjct: 101 CTAIKANILGKNLNLPIALSLVLNNCGKQVPNGFEC 136



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>CCDP_MAIZE (Q01595) Cortical cell-delineating protein precursor (Root-specific|
           protein ZRP3)
          Length = 129

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 23/37 (62%), Positives = 29/37 (78%)
 Frame = -3

Query: 352 CTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCP 242
           CTAIKA+VLGIH+N+P+ L+ ILN CG+  P  F CP
Sbjct: 92  CTAIKANVLGIHLNVPLSLNFILNNCGRICPEDFTCP 128



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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 17/38 (44%), Positives = 25/38 (65%)
 Frame = -3

Query: 352 CTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCPT 239
           CT I+  +L I+I LPI L ++++ CGK  P  F CP+
Sbjct: 308 CTTIRLKLLNINIILPIALQVLIDDCGKYPPKDFKCPS 345



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>HPSE_SOYBN (P24337) Hydrophobic seed protein (HPS) (Allergen Gly m 1)|
          Length = 80

 Score = 34.3 bits (77), Expect = 0.078
 Identities = 17/37 (45%), Positives = 22/37 (59%)
 Frame = -3

Query: 352 CTAIKADVLGIHINLPIHLSLILNFCGKGVPTGFMCP 242
           C  I+   LGI +NL  +L LILN CG+  P+   CP
Sbjct: 43  CLCIQLRALGI-LNLNRNLQLILNSCGRSYPSNATCP 78



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>C1TC_RAT (P27653) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -3

Query: 313 NLPI-----HLSLILNFCGKGVPTGFMCP 242
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886



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>C1TC_MOUSE (Q922D8) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -3

Query: 313 NLPI-----HLSLILNFCGKGVPTGFMCP 242
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFVLP 886



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>C1TC_HUMAN (P11586) C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF|
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate
           cyclohydrolase (EC 3.5.4.9); Formyltetrahydrofolate
           synthetase (EC 6.3.4.3)]
          Length = 934

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 17/29 (58%), Positives = 18/29 (62%), Gaps = 5/29 (17%)
 Frame = -3

Query: 313 NLPI-----HLSLILNFCGKGVPTGFMCP 242
           NLPI     HLSL  N   KGVPTGF+ P
Sbjct: 858 NLPICMAKTHLSLSHNPEQKGVPTGFILP 886



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>L_VSVSJ (P03523) Large structural protein (L protein) (Transcriptase)|
           (Replicase) [Includes: RNA-directed RNA polymerase (EC
           2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC
           2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)]
          Length = 2109

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 59  LAQATTQTFAKQYKTTKAKQIIERMHALRR 148
           LAQ   Q    QYKT K++ ++E   AL +
Sbjct: 710 LAQGDNQVICTQYKTKKSRNVVELQGALNQ 739



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>FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc receptor I precursor|
           (Fc-gamma RI) (FcRI) (IgG Fc receptor I) (CD64 antigen)
          Length = 374

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 26  HIPSQSKMQWPLAQATTQTFAKQYKTTKA 112
           H+P  S  QW L    TQT    Y+ T A
Sbjct: 47  HLPGSSSTQWFLNGTATQTSTPSYRITSA 75


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,149,347
Number of Sequences: 219361
Number of extensions: 731924
Number of successful extensions: 1917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1913
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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