ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart33a11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_479232.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1326 Score = 60.0 bits (30), Expect = 7e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 466 gagtagggcatttcctctttgatccaggta 495 |||||||||||||||||||||||||||||| Sbjct: 730 gagtagggcatttcctctttgatccaggta 701
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 7e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 466 gagtagggcatttcctctttgatccaggta 495 |||||||||||||||||||||||||||||| Sbjct: 26110711 gagtagggcatttcctctttgatccaggta 26110740
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 60.0 bits (30), Expect = 7e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 466 gagtagggcatttcctctttgatccaggta 495 |||||||||||||||||||||||||||||| Sbjct: 144273 gagtagggcatttcctctttgatccaggta 144302
>dbj|AK066723.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088A01, full insert sequence Length = 1386 Score = 60.0 bits (30), Expect = 7e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 466 gagtagggcatttcctctttgatccaggta 495 |||||||||||||||||||||||||||||| Sbjct: 790 gagtagggcatttcctctttgatccaggta 761
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 60.0 bits (30), Expect = 7e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 466 gagtagggcatttcctctttgatccaggta 495 |||||||||||||||||||||||||||||| Sbjct: 2569 gagtagggcatttcctctttgatccaggta 2598
>gb|AC122283.3| Mus musculus BAC clone RP23-242G6 from chromosome 10, complete sequence Length = 184346 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 261 ttctgaaggcagcctcttgagttgtgtaaattc 293 |||| |||||| |||||| |||||||||||||| Sbjct: 4864 ttcttaaggcatcctcttaagttgtgtaaattc 4896
>gb|AY077465.1| Xenorhabdus nematophila strain ATCC 19061 symbiosis region 1, partial sequence Length = 5050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aagtagaaataattggagtaa 146 ||||||||||||||||||||| Sbjct: 1805 aagtagaaataattggagtaa 1825
>gb|AC100868.2| Homo sapiens chromosome 8, clone RP11-246K8, complete sequence Length = 160939 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aagtagaaataattggagtaa 146 ||||||||||||||||||||| Sbjct: 55073 aagtagaaataattggagtaa 55093
>dbj|AK002123.1| Homo sapiens cDNA FLJ11261 fis, clone PLACE1009090 Length = 3097 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aagtagaaataattggagtaa 146 ||||||||||||||||||||| Sbjct: 1996 aagtagaaataattggagtaa 2016
>gb|AC026596.9| Homo sapiens chromosome 8, clone RP11-380O15, complete sequence Length = 165158 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 126 aagtagaaataattggagtaa 146 ||||||||||||||||||||| Sbjct: 113127 aagtagaaataattggagtaa 113147
>gb|AC092817.2| Homo sapiens chromosome 8, clone RP11-240B13, complete sequence Length = 168719 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 126 aagtagaaataattggagtaa 146 ||||||||||||||||||||| Sbjct: 33168 aagtagaaataattggagtaa 33148
>gb|AC130669.17| Mus musculus chromosome 15, clone RP24-84O5, complete sequence Length = 205231 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 tgacttttaagtacaaataca 109 ||||||||||||||||||||| Sbjct: 183779 tgacttttaagtacaaataca 183759
>gb|AC154881.6| Mus musculus chromosome 15, clone RP24-259H19, complete sequence Length = 180231 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 tgacttttaagtacaaataca 109 ||||||||||||||||||||| Sbjct: 3474 tgacttttaagtacaaataca 3454
>gb|AC152417.3| Mus musculus BAC clone RP23-56I21 from chromosome 10, complete sequence Length = 233783 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 261 ttctgaaggcagcctcttgagttgtgtaaattc 293 |||| |||||| |||||| |||||||||||||| Sbjct: 63361 ttcttaaggcatcctcttaagttgtgtaaattc 63329
>gb|AC132135.3| Mus musculus BAC clone RP23-268C21 from 10, complete sequence Length = 168874 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Minus Query: 261 ttctgaaggcagcctcttgagttgtgtaaattc 293 |||| |||||| |||||| |||||||||||||| Sbjct: 41704 ttcttaaggcatcctcttaagttgtgtaaattc 41672
>gb|AY442298.1| Paracentrotus lividus ETS1 mRNA, complete cds Length = 5369 Score = 40.1 bits (20), Expect = 6.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 aaactgacttttaagtacaaatacaaaa 112 ||||||| ||||||||||||||| |||| Sbjct: 4231 aaactgatttttaagtacaaatataaaa 4204
>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence Length = 4837408 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 atgatgatgccatgcattcc 179 |||||||||||||||||||| Sbjct: 4577767 atgatgatgccatgcattcc 4577748
>gb|AC145891.4| Pan troglodytes BAC clone RP43-20A24 from 7, complete sequence Length = 194412 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 148888 ccactgggaaactgactttt 148907
>emb|BX323815.12| Zebrafish DNA sequence from clone DKEY-148J13 in linkage group 14, complete sequence Length = 73527 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 tctaagagcttctgagagct 438 |||||||||||||||||||| Sbjct: 54988 tctaagagcttctgagagct 54969
>emb|AL954201.1| Pan troglodytes chromosome 22 clone PTB-118B22 map q21.1, complete sequence Length = 181254 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatatcaccactgggaaa 87 |||||||||||||||||||| Sbjct: 125472 ataatatcaccactgggaaa 125491
>ref|XM_744670.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g00110) partial mRNA Length = 492 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 atctggtgtactgttaaaga 327 |||||||||||||||||||| Sbjct: 448 atctggtgtactgttaaaga 467
>emb|CR407546.16| Zebrafish DNA sequence from clone CH211-276E3 in linkage group 17, complete sequence Length = 103614 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 acagtcatgtataacatcac 53 |||||||||||||||||||| Sbjct: 19794 acagtcatgtataacatcac 19775
>gb|AC126668.3| Mus musculus BAC clone RP24-370N20 from chromosome 7, complete sequence Length = 179246 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 attcctcattgcactgaaat 194 |||||||||||||||||||| Sbjct: 133199 attcctcattgcactgaaat 133180
>gb|AC084864.4| Homo sapiens chromosome 7 clone RP11-738B7, complete sequence Length = 176562 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 123323 ccactgggaaactgactttt 123304
>gb|AC021439.9| Homo sapiens chromosome 15, clone RP11-484P15, complete sequence Length = 206030 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 caaatacaaaatggtgttga 121 |||||||||||||||||||| Sbjct: 51903 caaatacaaaatggtgttga 51922
>gb|DP000060.1| Atelerix albiventris target 117 genomic scaffold Length = 527158 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 tggtgtactgttaaagaaag 330 |||||||||||||||||||| Sbjct: 119051 tggtgtactgttaaagaaag 119070
>gb|AC084865.3| Homo sapiens chromosome 7 clone RP11-437L1, complete sequence Length = 214162 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 45032 ccactgggaaactgactttt 45013
>gb|AC097504.3| Homo sapiens BAC clone RP11-362F19 from 4, complete sequence Length = 186215 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 tttcattgagatgcaacttt 219 |||||||||||||||||||| Sbjct: 99083 tttcattgagatgcaacttt 99102
>gb|AC009126.2| Homo sapiens chromosome 5 clone RP11-496M2, complete sequence Length = 177978 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aacatcactgtttgtataca 65 |||||||||||||||||||| Sbjct: 148111 aacatcactgtttgtataca 148130
>gb|AC022114.4| Homo sapiens chromosome 5 clone CTC-470L9, complete sequence Length = 102387 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aacatcactgtttgtataca 65 |||||||||||||||||||| Sbjct: 45653 aacatcactgtttgtataca 45634
>gb|AC023880.5|AC023880 Homo sapiens PAC clone RP5-999D10 from 7, complete sequence Length = 90422 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 69823 ccactgggaaactgactttt 69842
>emb|BX322617.9| Zebrafish DNA sequence from clone DKEY-33D4, complete sequence Length = 206855 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 acagtcatgtataacatcac 53 |||||||||||||||||||| Sbjct: 99963 acagtcatgtataacatcac 99982
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aatggtgttgacgcaaagta 130 |||||||||||||||||||| Sbjct: 103641 aatggtgttgacgcaaagta 103622
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tcttgagttgtgtaaattca 294 |||||||||||||||||||| Sbjct: 18159540 tcttgagttgtgtaaattca 18159521
>gb|AC112786.4| Homo sapiens BAC clone RP11-527H10 from 2, complete sequence Length = 121260 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cttttaagtacaaatacaaa 111 |||||||||||||||||||| Sbjct: 108601 cttttaagtacaaatacaaa 108582
>gb|AC107079.6| Homo sapiens BAC clone RP11-585E12 from 2, complete sequence Length = 133304 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 taatatcaccactgggaaac 88 |||||||||||||||||||| Sbjct: 1358 taatatcaccactgggaaac 1377
>gb|AC007498.7| Homo sapiens chromosome 16 clone RP11-424K7, complete sequence Length = 176248 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 ttcctcattgcactgaaatgaaca 199 |||||||||||||||| ||||||| Sbjct: 164406 ttcctcattgcactgagatgaaca 164429
>gb|AC027688.5| Homo sapiens chromosome 16 clone RP11-883G14, complete sequence Length = 177147 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ttcctcattgcactgaaatgaaca 199 |||||||||||||||| ||||||| Sbjct: 143023 ttcctcattgcactgagatgaaca 143000
>gb|AC023819.7| Homo sapiens chromosome 16 clone RP11-1102H15, complete sequence Length = 136137 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 176 ttcctcattgcactgaaatgaaca 199 |||||||||||||||| ||||||| Sbjct: 117051 ttcctcattgcactgagatgaaca 117028
>gb|AC105760.3| Homo sapiens BAC clone RP11-346I14 from 2, complete sequence Length = 77730 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 taatatcaccactgggaaac 88 |||||||||||||||||||| Sbjct: 77088 taatatcaccactgggaaac 77107
>gb|AC093774.2| Homo sapiens BAC clone RP11-135O12 from 2, complete sequence Length = 93499 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cttttaagtacaaatacaaa 111 |||||||||||||||||||| Sbjct: 82828 cttttaagtacaaatacaaa 82809
>gb|AC009073.8|AC009073 Homo sapiens chromosome 16 clone RP11-31O11, complete sequence Length = 177978 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aacatcactgtttgtataca 65 |||||||||||||||||||| Sbjct: 148111 aacatcactgtttgtataca 148130
>dbj|AP005066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0047E05 Length = 184323 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tcttgagttgtgtaaattca 294 |||||||||||||||||||| Sbjct: 82941 tcttgagttgtgtaaattca 82922
>dbj|AK026094.1| Homo sapiens cDNA: FLJ22441 fis, clone HRC09331 Length = 1861 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 301 ccactgggaaactgactttt 320
>dbj|AK024519.1| Homo sapiens cDNA: FLJ20866 fis, clone ADKA02201 Length = 1739 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 176 ccactgggaaactgactttt 195
>dbj|AP001712.1| Homo sapiens genomic DNA, chromosome 21q, section 56/105 Length = 340000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatatcaccactgggaaa 87 |||||||||||||||||||| Sbjct: 264834 ataatatcaccactgggaaa 264853
>dbj|AB006044.1| Nicotiana tomentosiformis gene for heat shock protein 26, partial cds Length = 1299 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gtcatgtataacatcactgt 56 |||||||||||||||||||| Sbjct: 576 gtcatgtataacatcactgt 557
>dbj|AB006041.1| Nicotiana tabacum gene for heat shock protein 26 (Type I), partial cds Length = 1299 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 gtcatgtataacatcactgt 56 |||||||||||||||||||| Sbjct: 576 gtcatgtataacatcactgt 557
>emb|AL832212.1|HSM803519 Homo sapiens mRNA; cDNA DKFZp686O222 (from clone DKFZp686O222) Length = 5185 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ccactgggaaactgactttt 96 |||||||||||||||||||| Sbjct: 3624 ccactgggaaactgactttt 3643
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aatggtgttgacgcaaagta 130 |||||||||||||||||||| Sbjct: 103641 aatggtgttgacgcaaagta 103622
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131346 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aatggtgttgacgcaaagta 130 |||||||||||||||||||| Sbjct: 103641 aatggtgttgacgcaaagta 103622
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161808 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 aatggtgttgacgcaaagta 130 |||||||||||||||||||| Sbjct: 55250 aatggtgttgacgcaaagta 55231
>dbj|AP000259.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone:32D2/64E11, complete sequence Length = 15157 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatatcaccactgggaaa 87 |||||||||||||||||||| Sbjct: 11388 ataatatcaccactgggaaa 11407
>dbj|AP000174.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone Q78C10-f32E9, segment 1/21, complete sequence Length = 100000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatatcaccactgggaaa 87 |||||||||||||||||||| Sbjct: 88673 ataatatcaccactgggaaa 88692
>dbj|AP000098.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related, Q78C10-149C3 region, segment 1/20 Length = 100000 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 ataatatcaccactgggaaa 87 |||||||||||||||||||| Sbjct: 88673 ataatatcaccactgggaaa 88692 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,568,688 Number of Sequences: 3902068 Number of extensions: 4568688 Number of successful extensions: 83126 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82901 Number of HSP's gapped (non-prelim): 225 length of query: 495 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 473 effective length of database: 17,147,199,772 effective search space: 8110625492156 effective search space used: 8110625492156 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
