>CH60_PLAFG (P34940) Chaperonin CPN60, mitochondrial precursor|
          Length = 700

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/73 (26%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -3

Query: 393 RLRMLFLYLGSMYLQAAYSVYEIRSSRNHQHLLV*S*IKY-TSPVMHRCKR--ILVETIA 223
           R+ +LF+ +  + L+  YS+ + RS  N   L +   +KY  S ++ R K   + ++   
Sbjct: 5   RIHILFVVIFLLCLRYGYSIKKKRSPNNKNRLFINKRLKYINSKIISRRKENYVKMKMTE 64

Query: 222 HSLKNKLAIFGQQ 184
           + +K K  I+G +
Sbjct: 65  NKVKGKDIIYGNE 77

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 176 LFHC*PKMASLFFRECAIVSTKILL---HLCITGEVYLIQDHTSKCW 307
           +FH    +AS   R C ++S  +LL     C+   V ++QD  S CW
Sbjct: 326 IFHMTYDLASAVMRICNLISMMLLLCHWDGCLQFLVPMLQDFPSDCW 372

>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +2

Query: 176 LFHC*PKMASLFFRECAIVSTKILL---HLCITGEVYLIQDHTSKCW 307
           +FH    +AS   R C ++S  +LL     C+   V ++QD  S CW
Sbjct: 326 IFHMTYDLASAVMRICNLISMMLLLCHWDGCLQFLVPMLQDFPSDCW 372


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,151,107
Number of Sequences: 219361
Number of extensions: 1225631
Number of successful extensions: 2349
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2349
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)