>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 205    tttattttttagggaatgtgctattg 230
              ||||| ||||||||||||||||||||
Sbjct: 464345 tttatgttttagggaatgtgctattg 464370

>gb|AC069311.6| Staphylococcus aureus clone sabac-4, complete sequence
          Length = 17593

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 205   tttattttttagggaatgtgctattg 230
             ||||| ||||||||||||||||||||
Sbjct: 13988 tttatgttttagggaatgtgctattg 14013

>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 205    tttattttttagggaatgtgctattg 230
              ||||| ||||||||||||||||||||
Sbjct: 467850 tttatgttttagggaatgtgctattg 467875

>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 205    tttattttttagggaatgtgctattg 230
              ||||| ||||||||||||||||||||
Sbjct: 385787 tttatgttttagggaatgtgctattg 385812

>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 205    tttattttttagggaatgtgctattg 230
              ||||| ||||||||||||||||||||
Sbjct: 443930 tttatgttttagggaatgtgctattg 443955

>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 205    tttattttttagggaatgtgctattg 230
              ||||| ||||||||||||||||||||
Sbjct: 438587 tttatgttttagggaatgtgctattg 438612

>gb|AC023301.5| Homo sapiens chromosome 18, clone RP11-713C5, complete sequence
          Length = 167190

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 209   ttttttagggaatgtgctatt 229
             |||||||||||||||||||||
Sbjct: 84151 ttttttagggaatgtgctatt 84171

>gb|AC091138.6| Homo sapiens chromosome 18, clone RP11-676J15, complete sequence
          Length = 207520

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 209   ttttttagggaatgtgctatt 229
             |||||||||||||||||||||
Sbjct: 23343 ttttttagggaatgtgctatt 23323

>emb|CT009654.2| Medicago truncatula chromosome 5 clone mth2-17c15, COMPLETE SEQUENCE
          Length = 126536

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 382    catcctcaacctagaatgcca 402
              |||||||||||||||||||||
Sbjct: 110581 catcctcaacctagaatgcca 110601

>ref|NM_104869.2| Arabidopsis thaliana unknown protein AT1G61870 mRNA, complete cds
          Length = 1612

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aaacttatttcattgctgac 191
            ||||||||||||||||||||
Sbjct: 1371 aaacttatttcattgctgac 1352

>gb|AC092193.4| Bos taurus clone RP42-459A17, complete sequence
          Length = 258544

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    ttagggaatgtgctattgtt 232
              ||||||||||||||||||||
Sbjct: 151478 ttagggaatgtgctattgtt 151459

>gb|AC154882.11| Mus musculus chromosome 3, clone RP24-187P10, complete sequence
          Length = 175586

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 425   tgtatcactcaccatgatcc 444
             ||||||||||||||||||||
Sbjct: 43788 tgtatcactcaccatgatcc 43807

>gb|AC134831.3| Mus musculus BAC clone RP24-500P4 from chromosome 18, complete
            sequence
          Length = 188380

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 193  gaaaatggctagtttatttt 212
            ||||||||||||||||||||
Sbjct: 2655 gaaaatggctagtttatttt 2674

>gb|AY576992.1| Danio rerio clone RK075A2H04 cleavage stimulation factor, 3' pre-RNA,
            subunit 3, 77kDa mRNA, complete cds
          Length = 2647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  cgaatttcatatactgaata 342
            ||||||||||||||||||||
Sbjct: 1279 cgaatttcatatactgaata 1260

>ref|NM_214719.1| Danio rerio cleavage stimulation factor, 3' pre-RNA, subunit 3
            (cstf3), transcript variant 2, mRNA
          Length = 2647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 323  cgaatttcatatactgaata 342
            ||||||||||||||||||||
Sbjct: 1279 cgaatttcatatactgaata 1260

>gb|AC159002.2| Mus musculus BAC clone RP23-203D7 from chromosome 14, complete sequence
          Length = 181842

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    ttattttttagggaatgtgc 225
              ||||||||||||||||||||
Sbjct: 141184 ttattttttagggaatgtgc 141203

>gb|AC079757.8| Homo sapiens BAC clone RP11-109N2 from 7, complete sequence
          Length = 13464

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 404   tcagaatagaactcaggtctatgt 427
             ||||||| ||||||||||||||||
Sbjct: 11341 tcagaattgaactcaggtctatgt 11318

>gb|AC101205.7| Mus musculus chromosome 14, clone RP23-178N17, complete sequence
          Length = 236164

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    ttattttttagggaatgtgc 225
              ||||||||||||||||||||
Sbjct: 230414 ttattttttagggaatgtgc 230395

>gb|AC121350.2| Rattus norvegicus chromosome 1 clone RP32-101I22 map q31-q35,
            complete sequence
          Length = 115948

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 403  ctcagaatagaactcaggtc 422
            ||||||||||||||||||||
Sbjct: 3966 ctcagaatagaactcaggtc 3947

>gb|AC162297.5| Mus musculus chromosome 18, clone RP24-276H6, complete sequence
          Length = 190293

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    gaaaatggctagtttatttt 212
              ||||||||||||||||||||
Sbjct: 107884 gaaaatggctagtttatttt 107903

>gb|AC113418.2| Homo sapiens chromosome 5 clone RP11-574H6, complete sequence
          Length = 182740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   ttttgcatctatgcattacc 265
             ||||||||||||||||||||
Sbjct: 74638 ttttgcatctatgcattacc 74619

>gb|AC092643.2| Homo sapiens BAC clone RP11-393P9 from 4, complete sequence
          Length = 151902

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   acaccagcaaatgttggtga 310
             ||||||||||||||||||||
Sbjct: 33018 acaccagcaaatgttggtga 32999

>gb|AY062858.1| Arabidopsis thaliana Unknown protein (At1g61870; F8K4.8) mRNA,
            complete cds
          Length = 1532

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aaacttatttcattgctgac 191
            ||||||||||||||||||||
Sbjct: 1368 aaacttatttcattgctgac 1349

>gb|AF428391.1|AF428391 Arabidopsis thaliana At1g61870/F8K4_8 mRNA, complete cds
          Length = 1613

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aaacttatttcattgctgac 191
            ||||||||||||||||||||
Sbjct: 1371 aaacttatttcattgctgac 1352

>gb|AC152397.6| Mus musculus chromosome 18, clone RP23-307D12, complete sequence
          Length = 218647

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 195    aaatggctagtttatttttt 214
              ||||||||||||||||||||
Sbjct: 120399 aaatggctagtttatttttt 120418

>gb|AC107642.14| Mus musculus chromosome 8, clone RP23-54J1, complete sequence
          Length = 218180

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    tcagaatagaactcaggtct 423
              ||||||||||||||||||||
Sbjct: 112410 tcagaatagaactcaggtct 112391

>emb|BX815172.1|CNS0ACS4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS3ZB10 of Adult vegetative tissue of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aaacttatttcattgctgac 191
            ||||||||||||||||||||
Sbjct: 1360 aaacttatttcattgctgac 1341

>gb|AY085627.1| Arabidopsis thaliana clone 16387 mRNA, complete sequence
          Length = 1588

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  aaacttatttcattgctgac 191
            ||||||||||||||||||||
Sbjct: 1368 aaacttatttcattgctgac 1349

>gb|AC164412.9| Mus musculus chromosome 3, clone RP24-360M7, complete sequence
          Length = 172583

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 425    tgtatcactcaccatgatcc 444
              ||||||||||||||||||||
Sbjct: 157554 tgtatcactcaccatgatcc 157573

>gb|AC004392.1|F8K4 Arabidopsis thaliana chromosome 1 BAC F8K4 sequence, complete sequence
          Length = 115641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   aaacttatttcattgctgac 191
             ||||||||||||||||||||
Sbjct: 42186 aaacttatttcattgctgac 42205

>emb|AL954738.10| Mouse DNA sequence from clone RP23-327A15 on chromosome 2, complete
             sequence
          Length = 78732

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   ttaccggagaggtatacttgattc 284
             ||||| ||||||||||||||||||
Sbjct: 41383 ttaccagagaggtatacttgattc 41360

>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome
          Length = 5528445

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tcttcatcaaccatatgaac 74
              ||||||||||||||||||||
Sbjct: 452314 tcttcatcaaccatatgaac 452295

>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome
          Length = 5498450

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     tcttcatcaaccatatgaac 74
              ||||||||||||||||||||
Sbjct: 452312 tcttcatcaaccatatgaac 452293

>emb|AL356022.3|CNS05TDC Human chromosome 14 DNA sequence BAC R-163M18 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 137723

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 363   agccaagatacaaaaataac 382
             ||||||||||||||||||||
Sbjct: 83049 agccaagatacaaaaataac 83030


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,790,848
Number of Sequences: 3902068
Number of extensions: 4790848
Number of successful extensions: 79447
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79309
Number of HSP's gapped (non-prelim): 138
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)