ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33a06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TERT_OXYTR (O76332) Telomerase reverse transcriptase (EC 2.7.7.4... 30 3.5
2HST4_YEAST (P53688) NAD-dependent deacetylase HST4 (EC 3.5.1.-) ... 29 4.5

>TERT_OXYTR (O76332) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase|
           catalytic subunit) (Telomerase subunit P133)
          Length = 1132

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 11/49 (22%)
 Frame = -2

Query: 292 EQPAKIEYQSRYN-----------KQRFV*SSTVQYQTFGYLAVSNEFG 179
           E+ AK+EY+  Y            K+  + +   + QTFGY  V+NEFG
Sbjct: 140 EKLAKLEYKLEYKNSYIDMISKVIKELLIENKLNKLQTFGYKLVNNEFG 188



to top

>HST4_YEAST (P53688) NAD-dependent deacetylase HST4 (EC 3.5.1.-) (Homologous to|
           SIR2 protein 4)
          Length = 370

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -3

Query: 408 VSLFASRAFCN*SSWKQILLPFSPVSNLLLLYAQS-DDAKNSLPRLNTN-------PGII 253
           VSLF     C  + + ++L  F+    LL LY Q+ D     LP L+TN       P  +
Sbjct: 151 VSLFRLSKNCQPTKFHEMLNEFARDGRLLRLYTQNIDGLDTQLPHLSTNVPLAKPIPSTV 210

Query: 252 N-RGSYNPAQCN 220
              GS    +CN
Sbjct: 211 QLHGSIKHMECN 222


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,906,131
Number of Sequences: 219361
Number of extensions: 958693
Number of successful extensions: 1755
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1755
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top