ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clon... 490 e-135
2dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clon... 490 e-135
3gb|AY106217.1| Zea mays PCO093522 mRNA sequence 490 e-135
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
5dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
6dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic D... 287 2e-74
7gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence 244 3e-61
8gb|AY232034.1| Drosophila yakuba clone yak-ad_CG6910 mRNA sequence 54 5e-04
9dbj|AB225760.1| Aspergillus oryzae cDNA, contig sequence: AoEST2615 54 5e-04
10dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011 54 5e-04
11gb|AF049069.1|AF049069 Pinus radiata PRE87 mRNA, complete cds 52 0.002
12gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosyn... 46 0.13
13ref|XM_658497.1| Aspergillus nidulans FGSC A4 hypothetical prote... 46 0.13
14gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gen... 44 0.49
15dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.49
16emb|AJ290426.1|CGL290426 Colletotrichum gloeosporioides f. sp. a... 44 0.49
17gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 42 2.0
18gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence 42 2.0
19emb|BX055800.1|CNS09F7W Single read from an extremity of a full-... 42 2.0
20emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin bio... 42 2.0
21dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
22gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
23emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa... 42 2.0
24emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb... 42 2.0
25dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 42 2.0
26ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) ... 40 7.7
27gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC),... 40 7.7
28gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete ge... 40 7.7
29ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM007... 40 7.7
30ref|XM_750263.1| Aspergillus fumigatus Af293 myo-inositol oxygen... 40 7.7
31ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 7.7
32emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete ch... 40 7.7
33gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC... 40 7.7
34emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chro... 40 7.7
35gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATP... 40 7.7
36gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complet... 40 7.7
37gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of... 40 7.7
38gb|AC004596.2| Homo sapiens chromosome 17, clone CTB-175E5, comp... 40 7.7
39emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Co... 40 7.7
40emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Co... 40 7.7
41emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Co... 40 7.7
42emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Co... 40 7.7
43gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13... 40 7.7
44gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete ... 40 7.7
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 7.7
46dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 40 7.7
47dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.7
48dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.7
49ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983 ... 40 7.7
50gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 7.7
51dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome 40 7.7
52emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on ch... 40 7.7 
>dbj|AK103977.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-G02, full
           insert sequence
          Length = 1288

 Score =  490 bits (247), Expect = e-135
 Identities = 352/387 (90%)
 Strand = Plus / Plus

                                                                       
Query: 182 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 241
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 266 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 325

                                                                       
Query: 242 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 301
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 326 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 385

                                                                       
Query: 302 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 361
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 386 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 445

                                                                       
Query: 362 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 421
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 505

                                                                       
Query: 422 cgaccccgacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccacccg 481
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 506 cgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 565

                                                                       
Query: 482 caaggactaccccgacgaggactggctccacctcacgggcctcatccacgatctgggcaa 541
           |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 566 caaggatttccccgacgaggactggctccacctcactggcctcatccacgatctgggcaa 625

                                      
Query: 542 ggtgctgctgcatcccagcttcgggga 568
           ||||||||||||||||||||| |||||
Sbjct: 626 ggtgctgctgcatcccagctttgggga 652
to top
>dbj|AK068862.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169F14, full
           insert sequence
          Length = 1289

 Score =  490 bits (247), Expect = e-135
 Identities = 352/387 (90%)
 Strand = Plus / Plus

                                                                       
Query: 182 ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 241
           |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 267 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 326

                                                                       
Query: 242 cagggactacgacgcggagtcggagcggaagaagacggtggaggagttctaccgcgtgaa 301
           |||| | || || || ||||| ||| ||||| |||||||||||||||||||||| || ||
Sbjct: 327 caggaattatgaggccgagtctgagaggaaggagacggtggaggagttctaccgggtcaa 386

                                                                       
Query: 302 ccacatcagccagacgtacgagttcgtgcggcggatgcgggacgcgtacgcgcggctgga 361
           |||||||| |||||| || || |||||| ||||||||||||| | |||||   || ||||
Sbjct: 387 ccacatcaaccagacatatgatttcgtgaggcggatgcgggaggagtacggtagggtgga 446

                                                                       
Query: 362 caggacggagatgagcatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 421
           || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caagacggagatggggatctgggagtgcatcgagctgctcaacgagttcatcgacgacag 506

                                                                       
Query: 422 cgaccccgacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccacccg 481
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 507 cgacccggacctcgacatgccgcagatcgagcacctcctccagaccgccgaggccatccg 566

                                                                       
Query: 482 caaggactaccccgacgaggactggctccacctcacgggcctcatccacgatctgggcaa 541
           |||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 567 caaggatttccccgacgaggactggctccacctcactggcctcatccacgatctgggcaa 626

                                      
Query: 542 ggtgctgctgcatcccagcttcgggga 568
           ||||||||||||||||||||| |||||
Sbjct: 627 ggtgctgctgcatcccagctttgggga 653
to top
>gb|AY106217.1| Zea mays PCO093522 mRNA sequence
          Length = 679

 Score =  490 bits (247), Expect = e-135
 Identities = 408/462 (88%), Gaps = 6/462 (1%)
 Strand = Plus / Plus

                                                                       
Query: 113 gatgaccatcatcatcgaccagactcagttcgatgcggcggcggagaggaaggtcgcc-- 170
           |||||| |||| ||| || ||| | ||| ||||||||| |||||||||||| ||| ||  
Sbjct: 115 gatgacgatcaccattgaacagccccagctcgatgcggtggcggagaggaaagtccccgg 174

                                                                       
Query: 171 ----ggggacccgggggagctcgtgctcgacggcggcttcaccgtgccggattccaacgc 226
               || ||||| | |||||| |||||||||| |||||||  |||||||||  |||||||
Sbjct: 175 cggaggtgaccccgcggagctggtgctcgacgccggcttcgtcgtgccggacgccaacgc 234

                                                                       
Query: 227 cttcggccacaccttcagggactacgacgcggagtcggagcggaagaagacggtggagga 286
           ||||||| | |||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 235 cttcggcaataccttcagggactacgacgcggagtcggagcggaagcagacggtagagga 294

                                                                       
Query: 287 gttctaccgcgtgaaccacatcagccagacgtacgagttcgtgcggcggatgcgggacgc 346
           ||||||||| ||||||||| | || |||||| |||||||||||  |||||||||||  | 
Sbjct: 295 gttctaccgggtgaaccacgtgaggcagacgcacgagttcgtggcgcggatgcgggcgga 354

                                                                       
Query: 347 gtacgcgcggctggacaggacggagatgagcatctgggagtgcatcgagctgctcaacga 406
           ||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||
Sbjct: 355 gtacgggcggctggacaagacggagatgggcatctgggagtgcatcgagctgctgaacga 414

                                                                       
Query: 407 gttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacctcctccagac 466
           ||||||||||||||||||||| ||||| |||||||| |||||||||||||| || |||||
Sbjct: 415 gttcatcgacgacagcgacccggacctggacatgccccagatcgagcacctgctgcagac 474

                                                                       
Query: 467 cgccgaggccacccgcaaggactaccccgacgaggactggctccacctcacgggcctcat 526
           ||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct: 475 cgccgaggccatccgcaaggactaccccgacgaggactggctccacctcaccggactcat 534

                                                     
Query: 527 ccacgatctgggcaaggtgctgctgcatcccagcttcgggga 568
           |||||| |||||||||||||||||||| || |||||||||||
Sbjct: 535 ccacgacctgggcaaggtgctgctgcacccaagcttcgggga 576
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  287 bits (145), Expect = 2e-74
 Identities = 187/201 (93%)
 Strand = Plus / Plus

                                                                            
Query: 331      ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 390
                ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 21132448 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 21132507

                                                                            
Query: 391      tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 450
                ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21132508 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 21132567

                                                                            
Query: 451      agcacctcctccagaccgccgaggccacccgcaaggactaccccgacgaggactggctcc 510
                ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 21132568 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 21132627

                                     
Query: 511      acctcacgggcctcatccacg 531
                ||||||| |||||||||||||
Sbjct: 21132628 acctcactggcctcatccacg 21132648



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                            
Query: 182      ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 241
                |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 21131065 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 21131124

                    
Query: 242      cagg 245
                ||||
Sbjct: 21131125 cagg 21131128



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                           
Query: 258      gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 316
                ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 21132241 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 21132299



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                      
Query: 531      gatctgggcaaggtgctgctgcatcccagcttcgggga 568
                |||||||||||||||||||||||||||||||| |||||
Sbjct: 21133236 gatctgggcaaggtgctgctgcatcccagctttgggga 21133273
to top
>dbj|AP003762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0456F09
          Length = 141336

 Score =  287 bits (145), Expect = 2e-74
 Identities = 187/201 (93%)
 Strand = Plus / Plus

                                                                         
Query: 331   ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 390
             ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 31109 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 31168

                                                                         
Query: 391   tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 450
             ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 31169 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 31228

                                                                         
Query: 451   agcacctcctccagaccgccgaggccacccgcaaggactaccccgacgaggactggctcc 510
             ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 31229 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 31288

                                  
Query: 511   acctcacgggcctcatccacg 531
             ||||||| |||||||||||||
Sbjct: 31289 acctcactggcctcatccacg 31309



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 182   ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 241
             |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 29726 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 29785

                 
Query: 242   cagg 245
             ||||
Sbjct: 29786 cagg 29789



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                        
Query: 258   gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 316
             ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 30902 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 30960



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                   
Query: 531   gatctgggcaaggtgctgctgcatcccagcttcgggga 568
             |||||||||||||||||||||||||||||||| |||||
Sbjct: 31897 gatctgggcaaggtgctgctgcatcccagctttgggga 31934
to top
>dbj|AP003713.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0528E12
          Length = 139750

 Score =  287 bits (145), Expect = 2e-74
 Identities = 187/201 (93%)
 Strand = Plus / Plus

                                                                          
Query: 331    ggcggatgcgggacgcgtacgcgcggctggacaggacggagatgagcatctgggagtgca 390
              ||||||||||||| | |||||   || |||||| |||||||||| | |||||||||||||
Sbjct: 129449 ggcggatgcgggaggagtacggtagggtggacaagacggagatggggatctgggagtgca 129508

                                                                          
Query: 391    tcgagctgctcaacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcg 450
              ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 129509 tcgagctgctcaacgagttcatcgacgacagcgacccggacctcgacatgccgcagatcg 129568

                                                                          
Query: 451    agcacctcctccagaccgccgaggccacccgcaaggactaccccgacgaggactggctcc 510
              ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||
Sbjct: 129569 agcacctcctccagaccgccgaggccatccgcaaggatttccccgacgaggactggctcc 129628

                                   
Query: 511    acctcacgggcctcatccacg 531
              ||||||| |||||||||||||
Sbjct: 129629 acctcactggcctcatccacg 129649



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                          
Query: 182    ggagctcgtgctcgacggcggcttcaccgtgccggattccaacgccttcggccacacctt 241
              |||||||||||||||||||||||||  ||||||||| ||||||||||||||| || ||||
Sbjct: 128066 ggagctcgtgctcgacggcggcttcgtcgtgccggactccaacgccttcggcaacgcctt 128125

                  
Query: 242    cagg 245
              ||||
Sbjct: 128126 cagg 128129



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 53/59 (89%)
 Strand = Plus / Plus

                                                                         
Query: 258    gagtcggagcggaagaagacggtggaggagttctaccgcgtgaaccacatcagccagac 316
              ||||| ||| ||||| |||||||||||||||||||||| || |||||||||| ||||||
Sbjct: 129242 gagtctgagaggaaggagacggtggaggagttctaccgggtcaaccacatcaaccagac 129300



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                    
Query: 531    gatctgggcaaggtgctgctgcatcccagcttcgggga 568
              |||||||||||||||||||||||||||||||| |||||
Sbjct: 130237 gatctgggcaaggtgctgctgcatcccagctttgggga 130274
to top
>gb|BT018941.1| Zea mays clone Contig87.F mRNA sequence
          Length = 783

 Score =  244 bits (123), Expect = 3e-61
 Identities = 156/167 (93%)
 Strand = Plus / Minus

                                                                       
Query: 402 aacgagttcatcgacgacagcgaccccgacctcgacatgccgcagatcgagcacctcctc 461
           |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| || 
Sbjct: 775 aacgagttcatcgacgacagcgacccggacctggacatgccccagatcgagcacctgctg 716

                                                                       
Query: 462 cagaccgccgaggccacccgcaaggactaccccgacgaggactggctccacctcacgggc 521
           |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 715 cagaccgccgaggccatccgcaaggactaccccgacgaggactggctccacctcaccgga 656

                                                          
Query: 522 ctcatccacgatctgggcaaggtgctgctgcatcccagcttcgggga 568
           ||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct: 655 ctcatccacgacctgggcaaggtgctgctgcacccaagcttcgggga 609
to top
>gb|AY232034.1| Drosophila yakuba clone yak-ad_CG6910 mRNA sequence
          Length = 474

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 504 tggctccacctcacgggcctcatccacgatctgggcaag 542
           ||||| ||||||||||  |||||||||||||||||||||
Sbjct: 313 tggctgcacctcacggcgctcatccacgatctgggcaag 351
to top
>dbj|AB225760.1| Aspergillus oryzae cDNA, contig sequence: AoEST2615
          Length = 851

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 444 cagatcgagcacctcctccagaccgccgaggccacccgc 482
           |||||||||||||| |||||| |||||||||||| ||||
Sbjct: 463 cagatcgagcaccttctccagtccgccgaggccatccgc 501
to top
>dbj|AP007171.1| Aspergillus oryzae RIB40 genomic DNA, SC011
          Length = 2505489

 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                      
Query: 444     cagatcgagcacctcctccagaccgccgaggccacccgc 482
               |||||||||||||| |||||| |||||||||||| ||||
Sbjct: 1571844 cagatcgagcaccttctccagtccgccgaggccatccgc 1571806
to top
>gb|AF049069.1|AF049069 Pinus radiata PRE87 mRNA, complete cds
          Length = 1230

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 519 ggcctcatccacgatctgggcaaggtgctgctgcatcc 556
           ||||||||||| |||||||||||||| || ||||||||
Sbjct: 306 ggcctcatccatgatctgggcaaggtactactgcatcc 343
to top
>gb|AY735112.1| Streptomyces hygroscopicus mannopeptimycin biosynthetic gene
           cluster, complete sequence
          Length = 48200

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 533 tctgggcaaggtgctgctgcatc 555
           |||||||||||||||||||||||
Sbjct: 880 tctgggcaaggtgctgctgcatc 902
to top
>ref|XM_658497.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN5985.2), mRNA
          Length = 648

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 516 acgggcctcatccacgatctgggcaag 542
           |||||||||||||||||||| ||||||
Sbjct: 142 acgggcctcatccacgatctcggcaag 168
to top
>gb|DQ324854.1| Azospirillum brasilense putative anti-sigma E gene, complete cds
          Length = 696

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 189 gtgctcgacggcggcttcaccg 210
           ||||||||||||||||||||||
Sbjct: 508 gtgctcgacggcggcttcaccg 529
to top
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 461     ccagaccgccgaggccacccgc 482
               ||||||||||||||||||||||
Sbjct: 4782028 ccagaccgccgaggccacccgc 4782007
to top
>emb|AJ290426.1|CGL290426 Colletotrichum gloeosporioides f. sp. aeschynomene mRNA for
           aldehyde reductase 6 (alr6 gene)
          Length = 939

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 444 cagatcgagcacctcctccagaccgccgaggcca 477
           |||||| ||||||| || ||||||||||||||||
Sbjct: 100 cagatccagcacctgctgcagaccgccgaggcca 133
to top
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 182     ggagctcgtgctcgacggcggcttcaccg 210
               |||||||||| ||||||||||||| ||||
Sbjct: 1658588 ggagctcgtgatcgacggcggctttaccg 1658616
to top
>gb|AC091091.2| Gallus gallus clone WAG-93J15, complete sequence
          Length = 136822

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 539   caaggtgctgctgcatcccag 559
             |||||||||||||||||||||
Sbjct: 21048 caaggtgctgctgcatcccag 21028
to top
>emb|BX055800.1|CNS09F7W Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 3-PRIME end of
           clone FK0AAC34CC07 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 641

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 119 catcatcatcgaccagactcagttc 143
           ||||||||||||||||| |||||||
Sbjct: 414 catcatcatcgaccagaatcagttc 438
to top
>emb|AJ536588.1|SCI536588 Streptomyces cinnamoneus cinnamycin biosynthetic cluster
          Length = 17083

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 468  gccgaggccacccgcaaggactacc 492
            ||||||||||||||| |||||||||
Sbjct: 2713 gccgaggccacccgcgaggactacc 2737
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 57       ctccgccgctctcgctgccgcgaga 81
                |||||||||||| ||||||||||||
Sbjct: 10056850 ctccgccgctcttgctgccgcgaga 10056826
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 57       ctccgccgctctcgctgccgcgaga 81
                |||||||||||| ||||||||||||
Sbjct: 10056735 ctccgccgctcttgctgccgcgaga 10056711
to top
>emb|AL731739.4|CNS08C7O Oryza sativa chromosome 12, . BAC OSJNBa0056I18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 145890

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 57     ctccgccgctctcgctgccgcgaga 81
              |||||||||||| ||||||||||||
Sbjct: 105771 ctccgccgctcttgctgccgcgaga 105795
to top
>emb|AL732642.4|CNS08C9H Oryza sativa chromosome 12, . BAC OSJNBb0071E08 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132906

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 57   ctccgccgctctcgctgccgcgaga 81
            |||||||||||| ||||||||||||
Sbjct: 1224 ctccgccgctcttgctgccgcgaga 1248
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 272     gaagacggtggaggagttcta 292
               |||||||||||||||||||||
Sbjct: 3065647 gaagacggtggaggagttcta 3065627
to top
>ref|NM_111903.1| Arabidopsis thaliana ATNAP7 AT3G10670 (ATNAP7) mRNA, complete cds
          Length = 1350

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48
to top
>gb|DQ022656.1| Azospirillum brasilense OxyR (oxyR), AhpC (ahpC), and AhpF (ahpF)
            genes, complete cds; and oxidoreductase gene, partial cds
          Length = 4471

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 406  agttcatcgacgacagcgaccccgacct 433
            |||||||||||| ||||||| |||||||
Sbjct: 1444 agttcatcgacgtcagcgacgccgacct 1471
to top
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome
          Length = 138390

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 341   ggacgcgtacgcgcggctgg 360
             ||||||||||||||||||||
Sbjct: 33662 ggacgcgtacgcgcggctgg 33681
to top
>ref|XM_751823.1| Ustilago maydis 521 hypothetical protein (UM00769.1) partial mRNA
          Length = 993

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 387 tgcatcgagctgctcaacga 406
           ||||||||||||||||||||
Sbjct: 307 tgcatcgagctgctcaacga 326
to top
>ref|XM_750263.1| Aspergillus fumigatus Af293 myo-inositol oxygenase (Afu2g10230)
           partial mRNA
          Length = 948

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 442 cgcagatcgagcacctcctccagaccgccgaggcca 477
           |||||||||||||||| || ||  ||||||||||||
Sbjct: 371 cgcagatcgagcacctgctacaatccgccgaggcca 406
to top
>ref|XM_382977.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG02801.1)
            partial mRNA
          Length = 2130

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 149  ggcggcggagaggaaggtcg 168
            ||||||||||||||||||||
Sbjct: 1629 ggcggcggagaggaaggtcg 1610
to top
>emb|AL591788.1|SME591788 Sinorhizobium meliloti 1021 complete chromosome; segment 7/12
          Length = 306250

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 469    ccgaggccacccgcaaggac 488
              ||||||||||||||||||||
Sbjct: 280376 ccgaggccacccgcaaggac 280357
to top
>gb|AC011708.8|ATAC011708 Arabidopsis thaliana chromosome III BAC T7M13 genomic sequence,
             complete sequence
          Length = 80379

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   gcggaagaagacggtggagg 285
             ||||||||||||||||||||
Sbjct: 79087 gcggaagaagacggtggagg 79068
to top
>emb|AL359377.18| Human DNA sequence from clone RP11-96C4 on chromosome 10 Contains part of
              the ANK3 gene for ankyrin 3, node of Ranvier (ankyrin G),
              complete sequence
          Length = 172177

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    gaggactggctccacctcac 517
              ||||||||||||||||||||
Sbjct: 120257 gaggactggctccacctcac 120238
to top
>gb|AY035125.1| Arabidopsis thaliana putative ABC transporter ATPase (At3g10670)
           mRNA, complete cds
          Length = 1368

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48
to top
>gb|AC175207.2| Sporobolomyces roseus clone JGIBAIF-9L20, complete sequence
          Length = 36012

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 268   ggaagaagacggtggaggag 287
             ||||||||||||||||||||
Sbjct: 29296 ggaagaagacggtggaggag 29277
to top
>gb|AE005984.1| Caulobacter crescentus CB15 section 310 of 359 of the complete genome
          Length = 10212

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  tcgatgcggcggcggagagg 161
            ||||||||||||||||||||
Sbjct: 5804 tcgatgcggcggcggagagg 5785
to top
>gb|AC004596.2| Homo sapiens chromosome 17, clone CTB-175E5, complete sequence
          Length = 92000

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 534   ctgggcaaggtgctgctgca 553
             ||||||||||||||||||||
Sbjct: 53419 ctgggcaaggtgctgctgca 53400
to top
>emb|BX822291.1|CNS0A774 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZH03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1277

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 54  gcggaagaagacggtggagg 35
to top
>emb|BX824893.1|CNS0A6YG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH80ZD10 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1303

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33
to top
>emb|BX824371.1|CNS0A6WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZA08 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1276

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 52  gcggaagaagacggtggagg 33
to top
>emb|BX823288.1|CNS0A6IN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS1ZF02 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1311

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 53  gcggaagaagacggtggagg 34
to top
>gb|AC011560.6|AC011560 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete
             sequence
          Length = 118107

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 266   gcggaagaagacggtggagg 285
             ||||||||||||||||||||
Sbjct: 10036 gcggaagaagacggtggagg 10017
to top
>gb|AY085010.1| Arabidopsis thaliana clone 124334 mRNA, complete sequence
          Length = 1350

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 266 gcggaagaagacggtggagg 285
           ||||||||||||||||||||
Sbjct: 67  gcggaagaagacggtggagg 48
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 530     cgatctgggcaaggtgctgc 549
               ||||||||||||||||||||
Sbjct: 4723467 cgatctgggcaaggtgctgc 4723448
to top
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 511     acctcacgggcctcatccac 530
               ||||||||||||||||||||
Sbjct: 1492992 acctcacgggcctcatccac 1492973
to top
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 193     tcgacggcggcttcaccgtg 212
               ||||||||||||||||||||
Sbjct: 4447233 tcgacggcggcttcaccgtg 4447214
to top
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     ctcgacggcggcttcaccgt 211
               ||||||||||||||||||||
Sbjct: 1339723 ctcgacggcggcttcaccgt 1339704
to top
>ref|XM_308776.2| Anopheles gambiae str. PEST ENSANGP00000014983 (ENSANGG00000012494),
            partial mRNA
          Length = 2943

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 444  cagatcgagcacctcctccagaccgccg 471
            |||||||| ||||||||||||| |||||
Sbjct: 2358 cagatcgaacacctcctccagatcgccg 2331
to top
>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 511     acctcacgggcctcatccac 530
               ||||||||||||||||||||
Sbjct: 1167687 acctcacgggcctcatccac 1167668
to top
>dbj|AP006627.1| Bacillus clausii KSM-K16 DNA, complete genome
          Length = 4303871

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 394     agctgctcaacgagttcatc 413
               ||||||||||||||||||||
Sbjct: 1933990 agctgctcaacgagttcatc 1933971
to top
>emb|AL591665.15| Mouse DNA sequence from clone RP23-333A18 on chromosome 2, complete
             sequence
          Length = 181419

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   gaggactggctccacctcac 517
             ||||||||||||||||||||
Sbjct: 13412 gaggactggctccacctcac 13431


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,370,679
Number of Sequences: 3902068
Number of extensions: 3370679
Number of successful extensions: 79732
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78521
Number of HSP's gapped (non-prelim): 1211
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top