No.
Definition
Score (bits)
E Value
1 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
109
1e-20
2 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
109
1e-20
3 emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb...
109
1e-20
4 gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome...
94
6e-16
5 gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome...
94
6e-16
6 dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...
94
6e-16
7 gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...
94
6e-16
8 emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb...
82
2e-12
9 ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predic...
56
1e-04
10 emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for ...
56
1e-04
11 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
12 dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
13 dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D...
56
1e-04
14 dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
15 gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl...
42
1.9
16 gb|AE012238.1| Xanthomonas campestris pv. campestris str. ATCC 3...
42
1.9
17 gb|AE009921.1|AE009921 Pyrobaculum aerophilum strain IM2 section...
42
1.9
18 gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...
42
1.9
19 gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
40
7.7
20 ref|XM_605779.2| PREDICTED: Bos taurus similar to germinal histo...
40
7.7
21 emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ...
40
7.7
22 gb|AY129336.1| Mycobacteriophage Che9d, complete genome
40
7.7
23 gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome...
40
7.7
24 gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 1...
40
7.7
25 emb|BX571658.1| Wolinella succinogenes, complete genome; segment...
40
7.7
26 gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23,...
40
7.7
27 dbj|AK092368.1| Homo sapiens cDNA FLJ35049 fis, clone OCBBF2018014
40
7.7
28 dbj|AB226254.1| Aspergillus oryzae cDNA, contig sequence: AoEST3113
40
7.7
29 dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
40
7.7
30 gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, com...
40
7.7
31 ref|XM_685658.1| PREDICTED: Danio rerio similar to rho/rac guani...
40
7.7
32 gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl...
40
7.7
33 emb|BX648239.1|HSM808387 Homo sapiens mRNA; cDNA DKFZp686H09108 ...
40
7.7
34 gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 fr...
40
7.7
35 gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, par...
40
7.7
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 109 bits (55), Expect = 1e-20
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 428 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 1842400 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842341
Query: 488 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
||||||| ||||| |||||||||||||| |||||||||||| || ||||| |||||
Sbjct: 1842340 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842282
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 430 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
|||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||
Sbjct: 1830668 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830609
Query: 490 agctc 494
|||||
Sbjct: 1830608 agctc 1830604
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 215 gccgccaccccgacggctggtacat 239
|||||||||||||||||||||||||
Sbjct: 1837860 gccgccaccccgacggctggtacat 1837836
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 429 ccaccagctcgtccctttcctcgag 453
|||||||||||||||||||||||||
Sbjct: 1834315 ccaccagctcgtccctttcctcgag 1834291
Score = 46.1 bits (23), Expect = 0.12
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 472 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
||||| ||||| || |||||||||||||| | || ||||||| | ||||||||||||
Sbjct: 1822057 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821998
Query: 532 gccgagtcgctgccg 546
||| | |||||||||
Sbjct: 1821997 gcccaatcgctgccg 1821983
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 109 bits (55), Expect = 1e-20
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 428 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 1842378 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842319
Query: 488 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
||||||| ||||| |||||||||||||| |||||||||||| || ||||| |||||
Sbjct: 1842318 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842260
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 430 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
|||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||
Sbjct: 1830646 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830587
Query: 490 agctc 494
|||||
Sbjct: 1830586 agctc 1830582
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 215 gccgccaccccgacggctggtacat 239
|||||||||||||||||||||||||
Sbjct: 1837838 gccgccaccccgacggctggtacat 1837814
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 429 ccaccagctcgtccctttcctcgag 453
|||||||||||||||||||||||||
Sbjct: 1834293 ccaccagctcgtccctttcctcgag 1834269
Score = 46.1 bits (23), Expect = 0.12
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 472 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
||||| ||||| || |||||||||||||| | || ||||||| | ||||||||||||
Sbjct: 1822035 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821976
Query: 532 gccgagtcgctgccg 546
||| | |||||||||
Sbjct: 1821975 gcccaatcgctgccg 1821961
>emb|AL935154.2 |CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 128619
Score = 109 bits (55), Expect = 1e-20
Identities = 103/119 (86%)
Strand = Plus / Minus
Query: 428 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 37118 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 37059
Query: 488 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
||||||| ||||| |||||||||||||| |||||||||||| || ||||| |||||
Sbjct: 37058 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 37000
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Minus
Query: 430 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
|||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||
Sbjct: 25386 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 25327
Query: 490 agctc 494
|||||
Sbjct: 25326 agctc 25322
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 215 gccgccaccccgacggctggtacat 239
|||||||||||||||||||||||||
Sbjct: 32578 gccgccaccccgacggctggtacat 32554
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 429 ccaccagctcgtccctttcctcgag 453
|||||||||||||||||||||||||
Sbjct: 29033 ccaccagctcgtccctttcctcgag 29009
Score = 46.1 bits (23), Expect = 0.12
Identities = 62/75 (82%)
Strand = Plus / Minus
Query: 472 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
||||| ||||| || |||||||||||||| | || ||||||| | ||||||||||||
Sbjct: 16775 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 16716
Query: 532 gccgagtcgctgccg 546
||| | |||||||||
Sbjct: 16715 gcccaatcgctgccg 16701
>dbj|AP008217.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 93.7 bits (47), Expect = 6e-16
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 428 cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
||||||||||||| |||||||| ||| ||||||| | || ||| || |||||||||||||
Sbjct: 1914427 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 1914368
Query: 488 tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
||||||| ||||| ||||||||||| || |||||||||||| || ||||| |||||
Sbjct: 1914367 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 1914309
Score = 89.7 bits (45), Expect = 9e-15
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 430 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
|||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||||||
Sbjct: 1894938 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 1894879
Query: 490 agctc 494
|||||
Sbjct: 1894878 agctc 1894874
Score = 42.1 bits (21), Expect = 1.9
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 219 ccaccccgacggctggtacat 239
|||||||||||||||||||||
Sbjct: 1911196 ccaccccgacggctggtacat 1911176
Score = 40.1 bits (20), Expect = 7.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 209 attgccgccgccaccccgac 228
||||||||||||||||||||
Sbjct: 6022993 attgccgccgccaccccgac 6023012
>emb|BX000502.2 |CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 132026
Score = 81.8 bits (41), Expect = 2e-12
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 430 caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
|||||||||||||||||||||||| ||||||| | | ||| ||||||||||||||||||
Sbjct: 9814 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 9873
Query: 490 agctc 494
|||||
Sbjct: 9874 agctc 9878
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 429 ccaccagctcgtccctttcctcgag 453
|||||||||||||||||||||||||
Sbjct: 6167 ccaccagctcgtccctttcctcgag 6191
Score = 50.1 bits (25), Expect = 0.008
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 215 gccgccaccccgacggctggtacat 239
|||||||||||||||||||||||||
Sbjct: 2622 gccgccaccccgacggctggtacat 2646
Score = 46.1 bits (23), Expect = 0.12
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 472 gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
||||| ||||| || |||||||||||||| | || ||||||| | ||||||||||||
Sbjct: 18425 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 18484
Query: 532 gccgagtcgctgccg 546
||| | |||||||||
Sbjct: 18485 gcccaatcgctgccg 18499
>gb|AF010496.1 |AF010496 Rhodobacter capsulatus strain SB1003, partial genome
Length = 189370
Score = 40.1 bits (20), Expect = 7.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 543 gccgccctccatcgcggcgt 562
||||||||||||||||||||
Sbjct: 44326 gccgccctccatcgcggcgt 44307
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,358,244
Number of Sequences: 3902068
Number of extensions: 3358244
Number of successful extensions: 59917
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59263
Number of HSP's gapped (non-prelim): 639
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)