ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart33a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
3emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb... 109 1e-20
4gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
5gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
6dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
7gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 94 6e-16
8emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb... 82 2e-12
9ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predic... 56 1e-04
10emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for ... 56 1e-04
11dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
12dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
13dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
14dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
15gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 42 1.9
16gb|AE012238.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.9
17gb|AE009921.1|AE009921 Pyrobaculum aerophilum strain IM2 section... 42 1.9
18gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 42 1.9
19gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 7.7
20ref|XM_605779.2| PREDICTED: Bos taurus similar to germinal histo... 40 7.7
21emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 7.7
22gb|AY129336.1| Mycobacteriophage Che9d, complete genome 40 7.7
23gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome... 40 7.7
24gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 1... 40 7.7
25emb|BX571658.1| Wolinella succinogenes, complete genome; segment... 40 7.7
26gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23,... 40 7.7
27dbj|AK092368.1| Homo sapiens cDNA FLJ35049 fis, clone OCBBF2018014 40 7.7
28dbj|AB226254.1| Aspergillus oryzae cDNA, contig sequence: AoEST3113 40 7.7
29dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009 40 7.7
30gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, com... 40 7.7
31ref|XM_685658.1| PREDICTED: Danio rerio similar to rho/rac guani... 40 7.7
32gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, compl... 40 7.7
33emb|BX648239.1|HSM808387 Homo sapiens mRNA; cDNA DKFZp686H09108 ... 40 7.7
34gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 fr... 40 7.7
35gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, par... 40 7.7

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                           
Query: 428     cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
               ||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 1842400 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842341

                                                                          
Query: 488     tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
               ||||||| ||||| ||||||||||||||    |||||||||||| || ||||| |||||
Sbjct: 1842340 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842282



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                           
Query: 430     caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
               |||||||||||||||||||||||| ||||||| | |  ||| ||||||||||||||||||
Sbjct: 1830668 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830609

                    
Query: 490     agctc 494
               |||||
Sbjct: 1830608 agctc 1830604



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 215     gccgccaccccgacggctggtacat 239
               |||||||||||||||||||||||||
Sbjct: 1837860 gccgccaccccgacggctggtacat 1837836



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 429     ccaccagctcgtccctttcctcgag 453
               |||||||||||||||||||||||||
Sbjct: 1834315 ccaccagctcgtccctttcctcgag 1834291



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                           
Query: 472     gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
               ||||| ||||| || |||||||||||||| |  ||  |||||||  | ||||||||||||
Sbjct: 1822057 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821998

                              
Query: 532     gccgagtcgctgccg 546
               ||| | |||||||||
Sbjct: 1821997 gcccaatcgctgccg 1821983



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                           
Query: 428     cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
               ||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 1842378 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 1842319

                                                                          
Query: 488     tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
               ||||||| ||||| ||||||||||||||    |||||||||||| || ||||| |||||
Sbjct: 1842318 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 1842260



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                           
Query: 430     caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
               |||||||||||||||||||||||| ||||||| | |  ||| ||||||||||||||||||
Sbjct: 1830646 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 1830587

                    
Query: 490     agctc 494
               |||||
Sbjct: 1830586 agctc 1830582



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 215     gccgccaccccgacggctggtacat 239
               |||||||||||||||||||||||||
Sbjct: 1837838 gccgccaccccgacggctggtacat 1837814



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                        
Query: 429     ccaccagctcgtccctttcctcgag 453
               |||||||||||||||||||||||||
Sbjct: 1834293 ccaccagctcgtccctttcctcgag 1834269



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                           
Query: 472     gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
               ||||| ||||| || |||||||||||||| |  ||  |||||||  | ||||||||||||
Sbjct: 1822035 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 1821976

                              
Query: 532     gccgagtcgctgccg 546
               ||| | |||||||||
Sbjct: 1821975 gcccaatcgctgccg 1821961



to top

>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 128619

 Score =  109 bits (55), Expect = 1e-20
 Identities = 103/119 (86%)
 Strand = Plus / Minus

                                                                         
Query: 428   cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
             ||||||||||||| |||||||| ||| ||||||| | || ||| ||||||||||||||||
Sbjct: 37118 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagaccggatccctgacc 37059

                                                                        
Query: 488   tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
             ||||||| ||||| ||||||||||||||    |||||||||||| || ||||| |||||
Sbjct: 37058 tgagctccctcccggcgccgcggctcttgatgacgcacatcccgtcccagtcgttgccg 37000



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Minus

                                                                         
Query: 430   caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
             |||||||||||||||||||||||| ||||||| | |  ||| ||||||||||||||||||
Sbjct: 25386 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 25327

                  
Query: 490   agctc 494
             |||||
Sbjct: 25326 agctc 25322



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 215   gccgccaccccgacggctggtacat 239
             |||||||||||||||||||||||||
Sbjct: 32578 gccgccaccccgacggctggtacat 32554



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 429   ccaccagctcgtccctttcctcgag 453
             |||||||||||||||||||||||||
Sbjct: 29033 ccaccagctcgtccctttcctcgag 29009



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                         
Query: 472   gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
             ||||| ||||| || |||||||||||||| |  ||  |||||||  | ||||||||||||
Sbjct: 16775 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 16716

                            
Query: 532   gccgagtcgctgccg 546
             ||| | |||||||||
Sbjct: 16715 gcccaatcgctgccg 16701



to top

>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNAa0068G15, complete sequence
          Length = 130161

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                         
Query: 428   cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
             ||||||||||||| |||||||| ||| ||||||| | || ||| || |||||||||||||
Sbjct: 46083 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 46024

                                                                        
Query: 488   tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
             ||||||| ||||| ||||||||||| ||    |||||||||||| || ||||| |||||
Sbjct: 46023 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 45965



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                         
Query: 430   caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
             |||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||||||
Sbjct: 26594 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 26535

                  
Query: 490   agctc 494
             |||||
Sbjct: 26534 agctc 26530



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   ccaccccgacggctggtacat 239
             |||||||||||||||||||||
Sbjct: 42852 ccaccccgacggctggtacat 42832



to top

>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15,
              complete sequence
          Length = 146175

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                          
Query: 428    cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
              ||||||||||||| |||||||| ||| ||||||| | || ||| || |||||||||||||
Sbjct: 132257 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 132198

                                                                         
Query: 488    tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
              ||||||| ||||| ||||||||||| ||    |||||||||||| || ||||| |||||
Sbjct: 132197 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 132139



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                          
Query: 430    caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
              |||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||||||
Sbjct: 112768 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 112709

                   
Query: 490    agctc 494
              |||||
Sbjct: 112708 agctc 112704



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    ccaccccgacggctggtacat 239
              |||||||||||||||||||||
Sbjct: 129026 ccaccccgacggctggtacat 129006



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                           
Query: 428     cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
               ||||||||||||| |||||||| ||| ||||||| | || ||| || |||||||||||||
Sbjct: 1914427 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 1914368

                                                                          
Query: 488     tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
               ||||||| ||||| ||||||||||| ||    |||||||||||| || ||||| |||||
Sbjct: 1914367 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 1914309



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 430     caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
               |||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||||||
Sbjct: 1894938 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 1894879

                    
Query: 490     agctc 494
               |||||
Sbjct: 1894878 agctc 1894874



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 219     ccaccccgacggctggtacat 239
               |||||||||||||||||||||
Sbjct: 1911196 ccaccccgacggctggtacat 1911176



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     attgccgccgccaccccgac 228
               ||||||||||||||||||||
Sbjct: 6022993 attgccgccgccaccccgac 6023012



to top

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 101/119 (84%)
 Strand = Plus / Minus

                                                                           
Query: 428     cccaccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacc 487
               ||||||||||||| |||||||| ||| ||||||| | || ||| || |||||||||||||
Sbjct: 1912148 cccaccagctcgttcctttccttgagacccaggtgttcatcaaagatcggatccctgacc 1912089

                                                                          
Query: 488     tgagctcgctccccgcgccgcggctcttcgccacgcacatcccggccgagtcgctgccg 546
               ||||||| ||||| ||||||||||| ||    |||||||||||| || ||||| |||||
Sbjct: 1912088 tgagctccctcccggcgccgcggctgttgatgacgcacatcccgtcccagtcgttgccg 1912030



 Score = 89.7 bits (45), Expect = 9e-15
 Identities = 60/65 (92%)
 Strand = Plus / Minus

                                                                           
Query: 430     caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
               |||||||||||||||||||||||| ||||||| | | |||| ||||||||||||||||||
Sbjct: 1892659 caccagctcgtccctttcctcgagtcccaggtgttcgccaatgaccggatccctgacctg 1892600

                    
Query: 490     agctc 494
               |||||
Sbjct: 1892599 agctc 1892595



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 219     ccaccccgacggctggtacat 239
               |||||||||||||||||||||
Sbjct: 1908917 ccaccccgacggctggtacat 1908897



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 209     attgccgccgccaccccgac 228
               ||||||||||||||||||||
Sbjct: 6089470 attgccgccgccaccccgac 6089489



to top

>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 132026

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 59/65 (90%)
 Strand = Plus / Plus

                                                                        
Query: 430  caccagctcgtccctttcctcgaggcccaggtctacaccaaggaccggatccctgacctg 489
            |||||||||||||||||||||||| ||||||| | |  ||| ||||||||||||||||||
Sbjct: 9814 caccagctcgtccctttcctcgagtcccaggtgttcgtcaatgaccggatccctgacctg 9873

                 
Query: 490  agctc 494
            |||||
Sbjct: 9874 agctc 9878



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 429  ccaccagctcgtccctttcctcgag 453
            |||||||||||||||||||||||||
Sbjct: 6167 ccaccagctcgtccctttcctcgag 6191



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                     
Query: 215  gccgccaccccgacggctggtacat 239
            |||||||||||||||||||||||||
Sbjct: 2622 gccgccaccccgacggctggtacat 2646



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 62/75 (82%)
 Strand = Plus / Plus

                                                                         
Query: 472   gaccggatccctgacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
             ||||| ||||| || |||||||||||||| |  ||  |||||||  | ||||||||||||
Sbjct: 18425 gaccgcatccccgatctgagctcgctcccggaaccaaggctcttgacgacgcacatcccg 18484

                            
Query: 532   gccgagtcgctgccg 546
             ||| | |||||||||
Sbjct: 18485 gcccaatcgctgccg 18499



to top

>ref|NM_183698.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 484 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
           ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 412 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 459



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 ccgccaccccgacggctggtaca 238
           |||||||||||||||||||||||
Sbjct: 132 ccgccaccccgacggctggtaca 154



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 430 caccagctcgtccctttcctcgag 453
           |||||||||||||| |||||||||
Sbjct: 358 caccagctcgtcccgttcctcgag 381



to top

>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid
           sulfotransferase (ss1 gene)
          Length = 1096

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 484 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
           ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 425 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 472



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 ccgccaccccgacggctggtaca 238
           |||||||||||||||||||||||
Sbjct: 145 ccgccaccccgacggctggtaca 167



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 430 caccagctcgtccctttcctcgag 453
           |||||||||||||| |||||||||
Sbjct: 371 caccagctcgtcccgttcctcgag 394



to top

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                                
Query: 484      gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
                ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 11687049 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 11687002



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 216      ccgccaccccgacggctggtaca 238
                |||||||||||||||||||||||
Sbjct: 11687329 ccgccaccccgacggctggtaca 11687307



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 430      caccagctcgtccctttcctcgag 453
                |||||||||||||| |||||||||
Sbjct: 11687103 caccagctcgtcccgttcctcgag 11687080



to top

>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0551A11
          Length = 132384

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                              
Query: 484    gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
              ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 126173 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 126126



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 216    ccgccaccccgacggctggtaca 238
              |||||||||||||||||||||||
Sbjct: 126453 ccgccaccccgacggctggtaca 126431



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 430    caccagctcgtccctttcctcgag 453
              |||||||||||||| |||||||||
Sbjct: 126227 caccagctcgtcccgttcctcgag 126204



to top

>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1011A07
          Length = 150590

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                             
Query: 484   gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
             ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 26217 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 26170



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 216   ccgccaccccgacggctggtaca 238
             |||||||||||||||||||||||
Sbjct: 26497 ccgccaccccgacggctggtaca 26475



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 430   caccagctcgtccctttcctcgag 453
             |||||||||||||| |||||||||
Sbjct: 26271 caccagctcgtcccgttcctcgag 26248



to top

>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full
           insert sequence
          Length = 1407

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Plus

                                                           
Query: 484 gacctgagctcgctccccgcgccgcggctcttcgccacgcacatcccg 531
           ||||||||||| ||||| ||||| |||||| |||| ||||||||||||
Sbjct: 484 gacctgagctccctcccggcgccacggctcctcgcgacgcacatcccg 531



 Score = 46.1 bits (23), Expect = 0.12
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 216 ccgccaccccgacggctggtaca 238
           |||||||||||||||||||||||
Sbjct: 204 ccgccaccccgacggctggtaca 226



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 430 caccagctcgtccctttcctcgag 453
           |||||||||||||| |||||||||
Sbjct: 430 caccagctcgtcccgttcctcgag 453



to top

>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 494    cgctccccgcgccgcggctcttcgc 518
              |||| ||||||||||||||||||||
Sbjct: 649982 cgctgcccgcgccgcggctcttcgc 649958



to top

>gb|AE012238.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 146
            of 460 of the complete genome
          Length = 11884

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 259  ggctccgtggtcgcgcagcagcgct 283
            |||||||||| ||||||||||||||
Sbjct: 6727 ggctccgtggccgcgcagcagcgct 6751



to top

>gb|AE009921.1|AE009921 Pyrobaculum aerophilum strain IM2 section 176 of 201 of the complete
            genome
          Length = 10311

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 414  cgcctcccacaactcccacca 434
            |||||||||||||||||||||
Sbjct: 8839 cgcctcccacaactcccacca 8819



to top

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 259     ggctccgtggtcgcgcagcagcgct 283
               |||||||||| ||||||||||||||
Sbjct: 3426134 ggctccgtggccgcgcagcagcgct 3426110



to top

>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 212     gccgccgccaccccgacggctggt 235
               |||||||||||||||| |||||||
Sbjct: 3715519 gccgccgccaccccgatggctggt 3715542



to top

>ref|XM_605779.2| PREDICTED: Bos taurus similar to germinal histone H4 gene
           (LOC527388), mRNA
          Length = 312

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 145 atctacgaggaagcccgtggggtg 168
           |||||||||||| |||||||||||
Sbjct: 151 atctacgaggaaacccgtggggtg 174



to top

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     ggattgccgccgccaccccg 226
               ||||||||||||||||||||
Sbjct: 2306027 ggattgccgccgccaccccg 2306008



to top

>gb|AY129336.1| Mycobacteriophage Che9d, complete genome
          Length = 56276

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   gcgacgccgacgcatcatcg 396
             ||||||||||||||||||||
Sbjct: 18040 gcgacgccgacgcatcatcg 18021



to top

>gb|AC162802.4| Mus musculus BAC clone RP23-363M4 from chromosome 5, complete sequence
          Length = 234206

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     catggctgctcctgctgtct 94
              ||||||||||||||||||||
Sbjct: 209326 catggctgctcctgctgtct 209307



to top

>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09,
             complete sequence
          Length = 135363

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   attgccgccgccaccccgac 228
             ||||||||||||||||||||
Sbjct: 79076 attgccgccgccaccccgac 79095



to top

>emb|BX571658.1| Wolinella succinogenes, complete genome; segment 2/7
          Length = 346792

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   attgccgccgccaccccgac 228
             ||||||||||||||||||||
Sbjct: 94764 attgccgccgccaccccgac 94745



to top

>gb|AF285442.2| Homo sapiens chromosome 8 clone XX-72A2 map 8p23, complete sequence
          Length = 86113

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 495   gctccccgcgccgcggctct 514
             ||||||||||||||||||||
Sbjct: 48813 gctccccgcgccgcggctct 48794



to top

>dbj|AK092368.1| Homo sapiens cDNA FLJ35049 fis, clone OCBBF2018014
          Length = 3276

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 gcccgtggggtggtgtccac 176
           ||||||||||||||||||||
Sbjct: 129 gcccgtggggtggtgtccac 148



to top

>dbj|AB226254.1| Aspergillus oryzae cDNA, contig sequence: AoEST3113
          Length = 2058

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 252 catggtgggctccgtggtcg 271
           ||||||||||||||||||||
Sbjct: 921 catggtgggctccgtggtcg 902



to top

>dbj|AP007150.1| Aspergillus oryzae RIB40 genomic DNA, SC009
          Length = 1913118

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 252     catggtgggctccgtggtcg 271
               ||||||||||||||||||||
Sbjct: 1204721 catggtgggctccgtggtcg 1204702



to top

>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence
          Length = 175749

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 495    gctccccgcgccgcggctct 514
              ||||||||||||||||||||
Sbjct: 121788 gctccccgcgccgcggctct 121769



to top

>ref|XM_685658.1| PREDICTED: Danio rerio similar to rho/rac guanine nucleotide exchange
            factor (GEF) 18 (LOC562264), mRNA
          Length = 3303

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 292  cgtggcaccgacgtgctcct 311
            ||||||||||||||||||||
Sbjct: 2326 cgtggcaccgacgtgctcct 2345



to top

>gb|AC012366.10| Homo sapiens BAC clone RP11-466M21 from 2, complete sequence
          Length = 197775

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 157   gcccgtggggtggtgtccac 176
             ||||||||||||||||||||
Sbjct: 43342 gcccgtggggtggtgtccac 43361



to top

>emb|BX648239.1|HSM808387 Homo sapiens mRNA; cDNA DKFZp686H09108 (from clone DKFZp686H09108)
          Length = 7732

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 495 gctccccgcgccgcggctct 514
           ||||||||||||||||||||
Sbjct: 152 gctccccgcgccgcggctct 171



to top

>gb|AC164973.4| Ornithorhynchus anatinus BAC clone OABb-265H16 from chromosome unknown,
             complete sequence
          Length = 129291

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   cccacaactcccaccagctc 438
             ||||||||||||||||||||
Sbjct: 83247 cccacaactcccaccagctc 83266



to top

>gb|AF010496.1|AF010496 Rhodobacter capsulatus strain SB1003, partial genome
          Length = 189370

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   gccgccctccatcgcggcgt 562
             ||||||||||||||||||||
Sbjct: 44326 gccgccctccatcgcggcgt 44307


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,358,244
Number of Sequences: 3902068
Number of extensions: 3358244
Number of successful extensions: 59917
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59263
Number of HSP's gapped (non-prelim): 639
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top