ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32h11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y337_MYCGE (P47579) Hypothetical protein MG337 30 2.3
2KNAT1_ARATH (P46639) Homeobox protein knotted-1-like 1 (KNAT1) 28 8.7

>Y337_MYCGE (P47579) Hypothetical protein MG337|
          Length = 138

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 139 IVESLRLIATMN*TCKWRCCMLLNQGILVRWF 44
           +VE L+L+  MN T K   C+LL    L++WF
Sbjct: 104 VVEELKLLIEMNVTEKRLQCLLLTPSNLLQWF 135



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>KNAT1_ARATH (P46639) Homeobox protein knotted-1-like 1 (KNAT1)|
          Length = 398

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +2

Query: 53  NQDPLIKQHATSPLTRLIHSSN*SQALHNGNEPSNN 160
           N +P +K  A+S  +R+ H S   +A+HN  E +NN
Sbjct: 90  NNNPSVKSEASS--SRINHYSMLMRAIHNTQEANNN 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,731,153
Number of Sequences: 219361
Number of extensions: 459738
Number of successful extensions: 888
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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