ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, co... 42 0.62
2emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chr... 42 0.62
3emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chr... 40 2.5
4emb|AL929185.14| Zebrafish DNA sequence from clone CH211-193L2 i... 40 2.5
5gb|AC096761.3| Homo sapiens BAC clone RP11-621B23 from 4, comple... 40 2.5
6gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, compl... 40 2.5
7dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.5
8gb|AC008417.3|AC008417 Homo sapiens chromosome 5 clone CTC-287O8... 40 2.5
9emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 i... 40 2.5
10emb|CT737352.3| Human DNA sequence from clone XX-HCC1954_35H21, ... 40 2.5
11gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 2.5
12emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa... 40 2.5
13gb|AC139064.13| Mus musculus chromosome 1, clone RP23-76C20, com... 38 9.7
14gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
15gb|AC132870.10| Mus musculus chromosome 15, clone RP24-206L11, c... 38 9.7
16gb|AC106830.11| Mus musculus chromosome 15, clone RP24-402C20, c... 38 9.7
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 9.7
18gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genom... 38 9.7
19ref|XM_858924.1| PREDICTED: Canis familiaris similar to chromati... 38 9.7
20ref|XM_846473.1| PREDICTED: Canis familiaris similar to chromati... 38 9.7
21gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC... 38 9.7
22gb|AC102781.5| Mus musculus chromosome 1, clone RP23-271G2, comp... 38 9.7
23emb|AL591591.6| Human DNA sequence from clone RP11-450E21 on chr... 38 9.7
24emb|AL357619.15| Human DNA sequence from clone RP11-703H16 on ch... 38 9.7
25emb|Z12832.1|ECPRORET E.coli proA and ret genes encoding gamma-g... 38 9.7
26gb|AC163019.5| Mus musculus chromosome 19, clone RP24-290E5, com... 38 9.7
27emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic regi... 38 9.7
28gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence 38 9.7
29emb|BX530017.13| Zebrafish DNA sequence from clone CH211-242H13 ... 38 9.7
30gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complet... 38 9.7
31gb|AC093846.3| Homo sapiens BAC clone RP11-458B24 from 4, comple... 38 9.7
32gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complet... 38 9.7
33gb|AC105394.3| Homo sapiens BAC clone RP11-383M19 from 4, comple... 38 9.7
34gb|AC021860.6| Homo sapiens BAC clone RP11-617D20 from 4, comple... 38 9.7
35ref|XM_940343.1| PREDICTED: Homo sapiens protein tyrosine phosph... 38 9.7
36ref|XM_926134.1| PREDICTED: Homo sapiens protein tyrosine phosph... 38 9.7
37gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Ca... 38 9.7
38tpg|BK000358.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M78 t... 38 9.7
39gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chr... 38 9.7
40gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, r... 38 9.7
41dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
42dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
44dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
45dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
46gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, com... 38 9.7
47gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, r... 38 9.7
48gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone ... 38 9.7
49gb|AC104201.12| Mus musculus chromosome 19, clone RP24-531I1, co... 38 9.7
50gb|AC004757.2| Homo sapiens chromosome 17, clone CTB-117K16, com... 38 9.7
51gb|AC012178.5| Homo sapiens chromosome 16 clone RP11-243A14, com... 38 9.7
52dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
53dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
54dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
55dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic D... 38 9.7
56dbj|AK025297.1| Homo sapiens cDNA: FLJ21644 fis, clone COL08411 38 9.7
57gb|AC006568.7|AC006568 Homo sapiens chromosome 4 clone C0548P18 ... 38 9.7
58gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91... 38 9.7
59emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-1... 38 9.7
60dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.7
61dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 38 9.7
62gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.50... 38 9.7
63gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. F... 38 9.7
64gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 9.7
65emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb... 38 9.7
66emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa... 38 9.7
67emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb... 38 9.7
68gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, comp... 38 9.7
69gb|AC161433.5| Mus musculus chromosome 8, clone RP23-50F12, comp... 38 9.7
70emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chr... 38 9.7 
>gb|AC147783.13| Mus musculus chromosome 12, clone RP23-256M6, complete sequence
          Length = 212734

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 23    cttggaatagagcaaaaagaaaaac 47
             ||||||||||||||||||| |||||
Sbjct: 24638 cttggaatagagcaaaaaggaaaac 24614
to top
>emb|CT030249.7| Mouse DNA sequence from clone RP23-285E19 on chromosome 12, complete
              sequence
          Length = 179748

 Score = 42.1 bits (21), Expect = 0.62
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 23     cttggaatagagcaaaaagaaaaac 47
              ||||||||||||||||||| |||||
Sbjct: 164390 cttggaatagagcaaaaaggaaaac 164366
to top
>emb|AL356107.21| Human DNA sequence from clone RP11-484D5 on chromosome 13 Contains the
             gene for a novel protein similar to transforming growth
             factor beta-stimulated protein (TSC-22),  SMARCE1 (SWI/SNF
             related, matrix associated, actin dependent regulator of
             chromatin, subfamily e, member 1 ) pseudogene and a CpG
             island, complete sequence
          Length = 140499

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    aatagagcaaaaagaaaaac 47
             ||||||||||||||||||||
Sbjct: 57015 aatagagcaaaaagaaaaac 57034
to top
>emb|AL929185.14| Zebrafish DNA sequence from clone CH211-193L2 in linkage group 11,
              complete sequence
          Length = 141071

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gaatagagcaaaaagaaaaa 46
              ||||||||||||||||||||
Sbjct: 103420 gaatagagcaaaaagaaaaa 103401
to top
>gb|AC096761.3| Homo sapiens BAC clone RP11-621B23 from 4, complete sequence
          Length = 146843

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tagagcaaaaagaaaaacca 49
             ||||||||||||||||||||
Sbjct: 64041 tagagcaaaaagaaaaacca 64022
to top
>gb|AC011366.6| Homo sapiens chromosome 5 clone CTC-568L21, complete sequence
          Length = 177954

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 27     gaatagagcaaaaagaaaaa 46
              ||||||||||||||||||||
Sbjct: 151120 gaatagagcaaaaagaaaaa 151139
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 102      taattcatagtagcaattaa 121
                ||||||||||||||||||||
Sbjct: 22025728 taattcatagtagcaattaa 22025709



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 25394826 attcatagtagcaattaat 25394844



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 17905469 attcatagtagcaattaat 17905451
to top
>gb|AC008417.3|AC008417 Homo sapiens chromosome 5 clone CTC-287O8, complete sequence
          Length = 216067

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 27     gaatagagcaaaaagaaaaa 46
              ||||||||||||||||||||
Sbjct: 198956 gaatagagcaaaaagaaaaa 198937
to top
>emb|CR545466.9| Zebrafish DNA sequence from clone DKEYP-115A10 in linkage group 20,
            complete sequence
          Length = 84525

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 68   attaagcagcatgcaacatc 87
            ||||||||||||||||||||
Sbjct: 6109 attaagcagcatgcaacatc 6090
to top
>emb|CT737352.3| Human DNA sequence from clone XX-HCC1954_35H21, complete sequence
          Length = 158492

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    gaatagagcaaaaagaaaaa 46
             ||||||||||||||||||||
Sbjct: 48580 gaatagagcaaaaagaaaaa 48561
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 102      taattcatagtagcaattaa 121
                ||||||||||||||||||||
Sbjct: 21954073 taattcatagtagcaattaa 21954054



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 25323002 attcatagtagcaattaat 25323020



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 17831844 attcatagtagcaattaat 17831826
to top
>emb|AL831807.7|CNS08CAK Oryza sativa chromosome 12, . BAC OSJNBa0062E22 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 138308

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    taattcatagtagcaattaa 121
              ||||||||||||||||||||
Sbjct: 131856 taattcatagtagcaattaa 131837
to top
>gb|AC139064.13| Mus musculus chromosome 1, clone RP23-76C20, complete sequence
          Length = 242463

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 35     caaaaagaaaaaccaccta 53
              |||||||||||||||||||
Sbjct: 234271 caaaaagaaaaaccaccta 234289
to top
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0061D06,
              complete sequence
          Length = 172126

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    attcatagtagcaattaat 122
              |||||||||||||||||||
Sbjct: 136781 attcatagtagcaattaat 136799
to top
>gb|AC132870.10| Mus musculus chromosome 15, clone RP24-206L11, complete sequence
          Length = 138560

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 130   tctccacaatggaaatgaa 148
             |||||||||||||||||||
Sbjct: 67983 tctccacaatggaaatgaa 67965
to top
>gb|AC106830.11| Mus musculus chromosome 15, clone RP24-402C20, complete sequence
          Length = 171577

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 130    tctccacaatggaaatgaa 148
              |||||||||||||||||||
Sbjct: 161108 tctccacaatggaaatgaa 161090
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 18076873 attcatagtagcaattaat 18076855
to top
>gb|AC133861.5| Oryza sativa chromosome 3 BAC OSJNBb0031F05 genomic sequence, complete
             sequence
          Length = 131589

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   attcatagtagcaattaat 122
             |||||||||||||||||||
Sbjct: 39328 attcatagtagcaattaat 39346
to top
>ref|XM_858924.1| PREDICTED: Canis familiaris similar to chromatin-specific
            transcription elongation factor large subunit, transcript
            variant 2 (LOC612874), mRNA
          Length = 4283

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 10   tgcccatggattccttggaatag 32
            |||||| ||||||||||||||||
Sbjct: 2883 tgcccaaggattccttggaatag 2861
to top
>ref|XM_846473.1| PREDICTED: Canis familiaris similar to chromatin-specific
            transcription elongation factor large subunit, transcript
            variant 1 (LOC612874), mRNA
          Length = 4685

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 10   tgcccatggattccttggaatag 32
            |||||| ||||||||||||||||
Sbjct: 3285 tgcccaaggattccttggaatag 3263
to top
>gb|AC009400.4|ATAC009400 Arabidopsis thaliana chromosome III BAC F14P13 genomic sequence,
             complete sequence
          Length = 87937

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    atagagcaaaaagaaaaac 47
             |||||||||||||||||||
Sbjct: 76846 atagagcaaaaagaaaaac 76828
to top
>gb|AC102781.5| Mus musculus chromosome 1, clone RP23-271G2, complete sequence
          Length = 198393

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 35    caaaaagaaaaaccaccta 53
             |||||||||||||||||||
Sbjct: 54192 caaaaagaaaaaccaccta 54210
to top
>emb|AL591591.6| Human DNA sequence from clone RP11-450E21 on chromosome X, complete
             sequence
          Length = 104117

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 36    aaaaagaaaaaccacctaa 54
             |||||||||||||||||||
Sbjct: 61037 aaaaagaaaaaccacctaa 61019
to top
>emb|AL357619.15| Human DNA sequence from clone RP11-703H16 on chromosome 6 Contains the
             3' end of the PPIL4 gene for peptidylprolyl isomerase
             (cyclophilin)-like 4 (HDCME13P), complete sequence
          Length = 28805

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    aaaaaccacctaaccaaga 60
             |||||||||||||||||||
Sbjct: 22802 aaaaaccacctaaccaaga 22820
to top
>emb|Z12832.1|ECPRORET E.coli proA and ret genes encoding gamma-glutamylphosphate reductase
            and reverse transcriptase
          Length = 3440

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 24   ttggaatagagcaaaaagaaaaa 46
            |||||||||| ||||||||||||
Sbjct: 1195 ttggaatagaacaaaaagaaaaa 1217
to top
>gb|AC163019.5| Mus musculus chromosome 19, clone RP24-290E5, complete sequence
          Length = 152969

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     atagagcaaaaagaaaaac 47
              |||||||||||||||||||
Sbjct: 135235 atagagcaaaaagaaaaac 135217
to top
>emb|AJ251829.1|SSC251829 Sus scrofa MHC class I SLA genomic region, haplotype H01, clone BAC 207G8
          Length = 152211

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 36     aaaaagaaaaaccacctaaccaa 58
              |||||||||||||||| ||||||
Sbjct: 119831 aaaaagaaaaaccaccaaaccaa 119809
to top
>gb|AC015813.12| Homo sapiens, clone RP11-159D12, complete sequence
          Length = 181494

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 28     aatagagcaaaaagaaaaaccac 50
              ||||||| |||||||||||||||
Sbjct: 170441 aatagagtaaaaagaaaaaccac 170419
to top
>emb|BX530017.13| Zebrafish DNA sequence from clone CH211-242H13 in linkage group 6,
              complete sequence
          Length = 164713

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 28     aatagagcaaaaagaaaaa 46
              |||||||||||||||||||
Sbjct: 115577 aatagagcaaaaagaaaaa 115559
to top
>gb|AC096763.2| Homo sapiens BAC clone RP11-625A6 from 4, complete sequence
          Length = 168710

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 36     aaaaagaaaaaccacctaaccaa 58
              |||||||||||||| ||||||||
Sbjct: 110659 aaaaagaaaaaccaactaaccaa 110681
to top
>gb|AC093846.3| Homo sapiens BAC clone RP11-458B24 from 4, complete sequence
          Length = 133759

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     agagcaaaaagaaaaacca 49
              |||||||||||||||||||
Sbjct: 111747 agagcaaaaagaaaaacca 111765
to top
>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence
          Length = 192263

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 28   aatagagcaaaaagaaaaa 46
            |||||||||||||||||||
Sbjct: 2474 aatagagcaaaaagaaaaa 2492
to top
>gb|AC105394.3| Homo sapiens BAC clone RP11-383M19 from 4, complete sequence
          Length = 158127

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 81    caacatctccacttacacgtcta 103
             |||| ||||||||||||||||||
Sbjct: 84810 caacctctccacttacacgtcta 84788
to top
>gb|AC021860.6| Homo sapiens BAC clone RP11-617D20 from 4, complete sequence
          Length = 148045

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 29    atagagcaaaaagaaaaac 47
             |||||||||||||||||||
Sbjct: 54741 atagagcaaaaagaaaaac 54723
to top
>ref|XM_940343.1| PREDICTED: Homo sapiens protein tyrosine phosphatase, receptor type,
            Q (PTPRQ), mRNA
          Length = 3072

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   ccttggaatagagcaaaaa 40
            |||||||||||||||||||
Sbjct: 2245 ccttggaatagagcaaaaa 2263
to top
>ref|XM_926134.1| PREDICTED: Homo sapiens protein tyrosine phosphatase, receptor type,
            Q (PTPRQ), mRNA
          Length = 3072

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 22   ccttggaatagagcaaaaa 40
            |||||||||||||||||||
Sbjct: 2245 ccttggaatagagcaaaaa 2263
to top
>gb|AC074031.16| Homo sapiens 12 BAC RP11-272K23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 163912

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 22    ccttggaatagagcaaaaa 40
             |||||||||||||||||||
Sbjct: 37455 ccttggaatagagcaaaaa 37437
to top
>tpg|BK000358.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M78 transposase gene,
           complete cds
          Length = 14306

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 104 attcatagtagcaattaat 122
           |||||||||||||||||||
Sbjct: 846 attcatagtagcaattaat 864
to top
>gb|AE010300.1| Leptospira interrogans serovar lai str. 56601 chromosome I, complete
               sequence
          Length = 4332241

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 35      caaaaagaaaaaccaccta 53
               |||||||||||||||||||
Sbjct: 2187112 caaaaagaaaaaccaccta 2187094
to top
>gb|AC008209.5|AC008209 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
             BACR06K17, complete sequence
          Length = 169902

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    gcaaaaagaaaaaccacct 52
             |||||||||||||||||||
Sbjct: 51931 gcaaaaagaaaaaccacct 51913
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 104     attcatagtagcaattaat 122
               |||||||||||||||||||
Sbjct: 9612896 attcatagtagcaattaat 9612878
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 104     attcatagtagcaattaat 122
               |||||||||||||||||||
Sbjct: 8478305 attcatagtagcaattaat 8478287
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 178      acgaaacatgcatataact 196
                |||||||||||||||||||
Sbjct: 27186484 acgaaacatgcatataact 27186502



 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 19346804 attcatagtagcaattaat 19346786
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 18070414 attcatagtagcaattaat 18070396
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      attcatagtagcaattaat 122
                |||||||||||||||||||
Sbjct: 17864141 attcatagtagcaattaat 17864159
to top
>gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, complete sequence
          Length = 174809

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    aatagagcaaaaagaaaaa 46
             |||||||||||||||||||
Sbjct: 13590 aatagagcaaaaagaaaaa 13608
to top
>gb|AC010580.5|AC010580 Drosophila melanogaster, chromosome 3R, region 96F-96F, BAC clone
              BACR48J06, complete sequence
          Length = 163970

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     gcaaaaagaaaaaccacct 52
              |||||||||||||||||||
Sbjct: 122700 gcaaaaagaaaaaccacct 122682
to top
>gb|AC160949.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBb0006E22,
             complete sequence
          Length = 128256

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 14    catggattccttggaatag 32
             |||||||||||||||||||
Sbjct: 35312 catggattccttggaatag 35330
to top
>gb|AC104201.12| Mus musculus chromosome 19, clone RP24-531I1, complete sequence
          Length = 166165

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 29     atagagcaaaaagaaaaac 47
              |||||||||||||||||||
Sbjct: 164907 atagagcaaaaagaaaaac 164889
to top
>gb|AC004757.2| Homo sapiens chromosome 17, clone CTB-117K16, complete sequence
          Length = 107156

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 28    aatagagcaaaaagaaaaaccac 50
             ||||||| |||||||||||||||
Sbjct: 43610 aatagagtaaaaagaaaaaccac 43632
to top
>gb|AC012178.5| Homo sapiens chromosome 16 clone RP11-243A14, complete sequence
          Length = 155951

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aatagagcaaaaagaaaaa 46
              |||||||||||||||||||
Sbjct: 134833 aatagagcaaaaagaaaaa 134851
to top
>dbj|AP003435.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0455H03
          Length = 175947

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 104    attcatagtagcaattaat 122
              |||||||||||||||||||
Sbjct: 111263 attcatagtagcaattaat 111281
to top
>dbj|AP005450.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0438E12
          Length = 146851

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 104   attcatagtagcaattaat 122
             |||||||||||||||||||
Sbjct: 51577 attcatagtagcaattaat 51559
to top
>dbj|AP003633.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0637D03
          Length = 180159

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 178   acgaaacatgcatataact 196
             |||||||||||||||||||
Sbjct: 43500 acgaaacatgcatataact 43518
to top
>dbj|AP005926.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBa0054E15
          Length = 142898

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    attcatagtagcaattaat 122
              |||||||||||||||||||
Sbjct: 103654 attcatagtagcaattaat 103636
to top
>dbj|AK025297.1| Homo sapiens cDNA: FLJ21644 fis, clone COL08411
          Length = 2369

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 81   caacatctccacttacacgtcta 103
            |||| ||||||||||||||||||
Sbjct: 982  caacctctccacttacacgtcta 1004
to top
>gb|AC006568.7|AC006568 Homo sapiens chromosome 4 clone C0548P18 map 4p16, complete sequence
          Length = 188705

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    aaaagaaaaaccacctaac 55
             |||||||||||||||||||
Sbjct: 86578 aaaagaaaaaccacctaac 86560
to top
>gb|AE003753.3| Drosophila melanogaster chromosome 3R, section 91 of 118 of the complete
              sequence
          Length = 226793

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     gcaaaaagaaaaaccacct 52
              |||||||||||||||||||
Sbjct: 117716 gcaaaaagaaaaaccacct 117698
to top
>emb|AL163153.4|CNS01RIE Human chromosome 14 DNA sequence BAC R-16O13 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 166562

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aatagagcaaaaagaaaaa 46
              |||||||||||||||||||
Sbjct: 119462 aatagagcaaaaagaaaaa 119480
to top
>dbj|AP002884.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-356J5, complete
              sequence
          Length = 165678

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 25     tggaatagagcaaaaagaa 43
              |||||||||||||||||||
Sbjct: 161312 tggaatagagcaaaaagaa 161330
to top
>dbj|AP002841.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-239P2, complete
             sequence
          Length = 176485

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    tggaatagagcaaaaagaa 43
             |||||||||||||||||||
Sbjct: 41103 tggaatagagcaaaaagaa 41121
to top
>gb|AC005962.1|AC005962 Homo sapiens chromosome 17, clone hRPK.506_H_21, complete sequence
          Length = 162083

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 28    aatagagcaaaaagaaaaaccac 50
             ||||||| |||||||||||||||
Sbjct: 24039 aatagagtaaaaagaaaaaccac 24017
to top
>gb|AE016823.1| Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130, chromosome
               I, complete sequence
          Length = 4277185

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 35      caaaaagaaaaaccaccta 53
               |||||||||||||||||||
Sbjct: 2095626 caaaaagaaaaaccaccta 2095644
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 104     attcatagtagcaattaat 122
               |||||||||||||||||||
Sbjct: 9684593 attcatagtagcaattaat 9684575
to top
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 152914

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   attcatagtagcaattaat 122
             |||||||||||||||||||
Sbjct: 61636 attcatagtagcaattaat 61654
to top
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 147543

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 104   attcatagtagcaattaat 122
             |||||||||||||||||||
Sbjct: 93031 attcatagtagcaattaat 93049
to top
>emb|AL731787.3|CNS08C8B Oryza sativa chromosome 12, . BAC OSJNBb0014C10 of library OSJNBb from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 142246

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    attcatagtagcaattaat 122
              |||||||||||||||||||
Sbjct: 124667 attcatagtagcaattaat 124649
to top
>gb|AC109165.11| Mus musculus chromosome 5, clone RP23-30B3, complete sequence
          Length = 202377

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 28     aatagagcaaaaagaaaaa 46
              |||||||||||||||||||
Sbjct: 105165 aatagagcaaaaagaaaaa 105183
to top
>gb|AC161433.5| Mus musculus chromosome 8, clone RP23-50F12, complete sequence
          Length = 253440

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 22     ccttggaatagagcaaaaa 40
              |||||||||||||||||||
Sbjct: 183941 ccttggaatagagcaaaaa 183923
to top
>emb|AL844571.8| Mouse DNA sequence from clone RP23-224C23 on chromosome 2, complete
              sequence
          Length = 182273

 Score = 38.2 bits (19), Expect = 9.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 4      gaataatgcccatggattc 22
              |||||||||||||||||||
Sbjct: 148104 gaataatgcccatggattc 148086


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,702,666
Number of Sequences: 3902068
Number of extensions: 2702666
Number of successful extensions: 161471
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 160085
Number of HSP's gapped (non-prelim): 1386
length of query: 196
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 174
effective length of database: 17,147,199,772
effective search space: 2983612760328
effective search space used: 2983612760328
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top