ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32h09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472434.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 176 bits (89), Expect = 4e-41 Identities = 170/197 (86%) Strand = Plus / Minus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagcatctctctcgccctttcc 256 ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 1322 aagcatggcgagtccctccacaccctggcgtgcatcttgagcatctccctcgccctcgcc 1263 Query: 257 ctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccccg 316 |||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||| Sbjct: 1262 ctcgtccgctcgccggaggcgccgacctgcaccaggaagagcagcctcgccaccacgccg 1203 Query: 317 accgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgcagg 376 || | |||||||| |||| ||| || | |||||||||||||||||||| || ||||| Sbjct: 1202 acgggcagcatctcctgcagcaccgccgacgtcgccgagtgcctcgccacggcgtgcagc 1143 Query: 377 gcgcgcaccgcgctctc 393 |||||||| |||||||| Sbjct: 1142 gcgcgcacggcgctctc 1126
>emb|AL606598.3|OSJN00036 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G16, complete sequence Length = 114051 Score = 176 bits (89), Expect = 4e-41 Identities = 170/197 (86%) Strand = Plus / Plus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagcatctctctcgccctttcc 256 ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 53505 aagcatggcgagtccctccacaccctggcgtgcatcttgagcatctccctcgccctcgcc 53564 Query: 257 ctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccccg 316 |||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||| Sbjct: 53565 ctcgtccgctcgccggaggcgccgacctgcaccaggaagagcagcctcgccaccacgccg 53624 Query: 317 accgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgcagg 376 || | |||||||| |||| ||| || | |||||||||||||||||||| || ||||| Sbjct: 53625 acgggcagcatctcctgcagcaccgccgacgtcgccgagtgcctcgccacggcgtgcagc 53684 Query: 377 gcgcgcaccgcgctctc 393 |||||||| |||||||| Sbjct: 53685 gcgcgcacggcgctctc 53701
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 176 bits (89), Expect = 4e-41 Identities = 170/197 (86%) Strand = Plus / Plus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagcatctctctcgccctttcc 256 ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||||| || Sbjct: 20619071 aagcatggcgagtccctccacaccctggcgtgcatcttgagcatctccctcgccctcgcc 20619130 Query: 257 ctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccccg 316 |||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||||| ||| Sbjct: 20619131 ctcgtccgctcgccggaggcgccgacctgcaccaggaagagcagcctcgccaccacgccg 20619190 Query: 317 accgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgcagg 376 || | |||||||| |||| ||| || | |||||||||||||||||||| || ||||| Sbjct: 20619191 acgggcagcatctcctgcagcaccgccgacgtcgccgagtgcctcgccacggcgtgcagc 20619250 Query: 377 gcgcgcaccgcgctctc 393 |||||||| |||||||| Sbjct: 20619251 gcgcgcacggcgctctc 20619267
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 105 bits (53), Expect = 1e-19 Identities = 144/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 222 tggcgtgcatcttgagcatctctctcgccctttccctcggccgatcgccggcggcgccgg 281 |||||||||||||||||||||| ||| |||| ||| ||| | | ||||||| | |||| Sbjct: 14722418 tggcgtgcatcttgagcatctccctcaccctctcc-tcgtctgctcgccggagatgccga 14722360 Query: 282 cctgcaccaggaacagcagcctctccaccaccccgaccgcaagcatctcttgcaacactg 341 ||||||||||||| ||||||||| ||||||||||||| || | |||||| ||| ||| | Sbjct: 14722359 cctgcaccaggaagagcagcctcgccaccaccccgacagccaacatctcctgctgcaccg 14722300 Query: 342 ctggggtcgccgagtgcctcgccaccgcatgcagggcgcgcaccgcgctctc 393 | || ||||||||||||||||||| || |||| |||||||| |||||||| Sbjct: 14722299 ccggcgtcgccgagtgcctcgccatggcgtgca--gcgcgcacggcgctctc 14722250
>dbj|AP004804.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0680B05 Length = 138741 Score = 105 bits (53), Expect = 1e-19 Identities = 144/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 222 tggcgtgcatcttgagcatctctctcgccctttccctcggccgatcgccggcggcgccgg 281 |||||||||||||||||||||| ||| |||| ||| ||| | | ||||||| | |||| Sbjct: 108285 tggcgtgcatcttgagcatctccctcaccctctcc-tcgtctgctcgccggagatgccga 108227 Query: 282 cctgcaccaggaacagcagcctctccaccaccccgaccgcaagcatctcttgcaacactg 341 ||||||||||||| ||||||||| ||||||||||||| || | |||||| ||| ||| | Sbjct: 108226 cctgcaccaggaagagcagcctcgccaccaccccgacagccaacatctcctgctgcaccg 108167 Query: 342 ctggggtcgccgagtgcctcgccaccgcatgcagggcgcgcaccgcgctctc 393 | || ||||||||||||||||||| || |||| |||||||| |||||||| Sbjct: 108166 ccggcgtcgccgagtgcctcgccatggcgtgca--gcgcgcacggcgctctc 108117
>dbj|AP004802.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0640D01 Length = 164996 Score = 105 bits (53), Expect = 1e-19 Identities = 144/172 (83%), Gaps = 3/172 (1%) Strand = Plus / Minus Query: 222 tggcgtgcatcttgagcatctctctcgccctttccctcggccgatcgccggcggcgccgg 281 |||||||||||||||||||||| ||| |||| ||| ||| | | ||||||| | |||| Sbjct: 33502 tggcgtgcatcttgagcatctccctcaccctctcc-tcgtctgctcgccggagatgccga 33444 Query: 282 cctgcaccaggaacagcagcctctccaccaccccgaccgcaagcatctcttgcaacactg 341 ||||||||||||| ||||||||| ||||||||||||| || | |||||| ||| ||| | Sbjct: 33443 cctgcaccaggaagagcagcctcgccaccaccccgacagccaacatctcctgctgcaccg 33384 Query: 342 ctggggtcgccgagtgcctcgccaccgcatgcagggcgcgcaccgcgctctc 393 | || ||||||||||||||||||| || |||| |||||||| |||||||| Sbjct: 33383 ccggcgtcgccgagtgcctcgccatggcgtgca--gcgcgcacggcgctctc 33334
>ref|NM_194924.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNAa0034B05.9), mRNA Length = 441 Score = 89.7 bits (45), Expect = 6e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 245 ctcgccctttccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctc 304 |||||||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||| Sbjct: 332 ctcgccctcgccctcgtctgctcgccggaggcgccgacctgcaccaggaagagcagcctc 273 Query: 305 tccaccaccccgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgcc 364 || |||| ||||| || |||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 272 gcccccacaccgacggccagcatctcctgcagcaccgccggcgtcgccgagtgccttgcc 213 Query: 365 a 365 | Sbjct: 212 a 212
>gb|AC091724.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0004E08, complete sequence Length = 158294 Score = 89.7 bits (45), Expect = 6e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 245 ctcgccctttccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctc 304 |||||||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||| Sbjct: 30102 ctcgccctcgccctcgtctgctcgccggaggcgccgacctgcaccaggaagagcagcctc 30043 Query: 305 tccaccaccccgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgcc 364 || |||| ||||| || |||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 30042 gcccccacaccgacggccagcatctcctgcagcaccgccggcgtcgccgagtgccttgcc 29983 Query: 365 a 365 | Sbjct: 29982 a 29982
>gb|AC122145.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAa0034B05, complete sequence Length = 125655 Score = 89.7 bits (45), Expect = 6e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 245 ctcgccctttccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctc 304 |||||||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||| Sbjct: 95757 ctcgccctcgccctcgtctgctcgccggaggcgccgacctgcaccaggaagagcagcctc 95698 Query: 305 tccaccaccccgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgcc 364 || |||| ||||| || |||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 95697 gcccccacaccgacggccagcatctcctgcagcaccgccggcgtcgccgagtgccttgcc 95638 Query: 365 a 365 | Sbjct: 95637 a 95637
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 89.7 bits (45), Expect = 6e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 245 ctcgccctttccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctc 304 |||||||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||| Sbjct: 3438973 ctcgccctcgccctcgtctgctcgccggaggcgccgacctgcaccaggaagagcagcctc 3438914 Query: 305 tccaccaccccgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgcc 364 || |||| ||||| || |||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 3438913 gcccccacaccgacggccagcatctcctgcagcaccgccggcgtcgccgagtgccttgcc 3438854 Query: 365 a 365 | Sbjct: 3438853 a 3438853
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 89.7 bits (45), Expect = 6e-15 Identities = 102/121 (84%) Strand = Plus / Minus Query: 245 ctcgccctttccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctc 304 |||||||| |||||| | | ||||||| ||||||| ||||||||||||| ||||||||| Sbjct: 3438894 ctcgccctcgccctcgtctgctcgccggaggcgccgacctgcaccaggaagagcagcctc 3438835 Query: 305 tccaccaccccgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgcc 364 || |||| ||||| || |||||||| |||| ||| || || |||||||||||||| ||| Sbjct: 3438834 gcccccacaccgacggccagcatctcctgcagcaccgccggcgtcgccgagtgccttgcc 3438775 Query: 365 a 365 | Sbjct: 3438774 a 3438774
>ref|XM_476835.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1947 Score = 61.9 bits (31), Expect = 1e-06 Identities = 112/139 (80%) Strand = Plus / Minus Query: 255 ccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccc 314 |||||| ||| | ||||| ||||||| | ||||||||||| | ||||||| || |||| | Sbjct: 1750 ccctcgtccgcttgccggaggcgccgacttgcaccaggaagaacagcctcgcccccacgc 1691 Query: 315 cgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgca 374 |||| || |||||||| |||| ||| || | ||||||| |||| ||||||| | |||| Sbjct: 1690 cgacggccagcatctcctgcagcaccgccgacgtcgccgtgtgcgtcgccacgacgtgca 1631 Query: 375 gggcgcgcaccgcgctctc 393 | ||||||| |||||||| Sbjct: 1630 gcgcgcgcatagcgctctc 1612
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 61.9 bits (31), Expect = 1e-06 Identities = 112/139 (80%) Strand = Plus / Plus Query: 255 ccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccc 314 |||||| ||| | ||||| ||||||| | ||||||||||| | ||||||| || |||| | Sbjct: 4133215 ccctcgtccgcttgccggaggcgccgacttgcaccaggaagaacagcctcgcccccacgc 4133274 Query: 315 cgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgca 374 |||| || |||||||| |||| ||| || | ||||||| |||| ||||||| | |||| Sbjct: 4133275 cgacggccagcatctcctgcagcaccgccgacgtcgccgtgtgcgtcgccacgacgtgca 4133334 Query: 375 gggcgcgcaccgcgctctc 393 | ||||||| |||||||| Sbjct: 4133335 gcgcgcgcatagcgctctc 4133353
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 61.9 bits (31), Expect = 1e-06 Identities = 112/139 (80%) Strand = Plus / Plus Query: 255 ccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccc 314 |||||| ||| | ||||| ||||||| | ||||||||||| | ||||||| || |||| | Sbjct: 16837 ccctcgtccgcttgccggaggcgccgacttgcaccaggaagaacagcctcgcccccacgc 16896 Query: 315 cgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgca 374 |||| || |||||||| |||| ||| || | ||||||| |||| ||||||| | |||| Sbjct: 16897 cgacggccagcatctcctgcagcaccgccgacgtcgccgtgtgcgtcgccacgacgtgca 16956 Query: 375 gggcgcgcaccgcgctctc 393 | ||||||| |||||||| Sbjct: 16957 gcgcgcgcatagcgctctc 16975
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 61.9 bits (31), Expect = 1e-06 Identities = 112/139 (80%) Strand = Plus / Plus Query: 255 ccctcggccgatcgccggcggcgccggcctgcaccaggaacagcagcctctccaccaccc 314 |||||| ||| | ||||| ||||||| | ||||||||||| | ||||||| || |||| | Sbjct: 126073 ccctcgtccgcttgccggaggcgccgacttgcaccaggaagaacagcctcgcccccacgc 126132 Query: 315 cgaccgcaagcatctcttgcaacactgctggggtcgccgagtgcctcgccaccgcatgca 374 |||| || |||||||| |||| ||| || | ||||||| |||| ||||||| | |||| Sbjct: 126133 cgacggccagcatctcctgcagcaccgccgacgtcgccgtgtgcgtcgccacgacgtgca 126192 Query: 375 gggcgcgcaccgcgctctc 393 | ||||||| |||||||| Sbjct: 126193 gcgcgcgcatagcgctctc 126211
>emb|BX470098.15| Zebrafish DNA sequence from clone DKEY-148D16 in linkage group 12, complete sequence Length = 249826 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Minus Query: 149 acttgcatgtgatatcaagaagggta 174 |||||||||||||||||||||||||| Sbjct: 53723 acttgcatgtgatatcaagaagggta 53698
>emb|AL954768.7| Zebrafish DNA sequence from clone CH211-254L23 in linkage group 12, complete sequence Length = 159442 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 149 acttgcatgtgatatcaagaagggta 174 |||||||||||||||||||||||||| Sbjct: 156227 acttgcatgtgatatcaagaagggta 156252
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 360 tcgccaccgcatgcagggcgcgca 383 |||||||||||||||||||||||| Sbjct: 2528136 tcgccaccgcatgcagggcgcgca 2528159
>ref|NM_190741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1389 Score = 46.1 bits (23), Expect = 0.086 Identities = 38/43 (88%) Strand = Plus / Minus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagca 239 ||||| |||||| | ||||||||||||| ||||| |||||||| Sbjct: 1355 aagcatggcgaggccctccagaccctggagtgcagcttgagca 1313
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.086 Identities = 38/43 (88%) Strand = Plus / Plus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagca 239 ||||| |||||| | ||||||||||||| ||||| |||||||| Sbjct: 37457563 aagcatggcgaggccctccagaccctggagtgcagcttgagca 37457605
>dbj|AP003270.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0505D12 Length = 146951 Score = 46.1 bits (23), Expect = 0.086 Identities = 38/43 (88%) Strand = Plus / Plus Query: 197 aagcacggcgagcctctccagaccctggcgtgcatcttgagca 239 ||||| |||||| | ||||||||||||| ||||| |||||||| Sbjct: 52100 aagcatggcgaggccctccagaccctggagtgcagcttgagca 52142
>ref|NM_117217.1| Arabidopsis thaliana kinase AT4G11460 mRNA, complete cds Length = 2103 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 aatttcagagatcatcaaact 36 ||||||||||||||||||||| Sbjct: 1492 aatttcagagatcatcaaact 1512
>gb|AC151715.3| Mus musculus BAC clone RP23-396L12 from chromosome 7, complete sequence Length = 204221 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 acagcagcctctccaccaccc 314 ||||||||||||||||||||| Sbjct: 147909 acagcagcctctccaccaccc 147929
>ref|XM_427346.1| PREDICTED: Gallus gallus similar to Sucrase-isomaltase, intestinal (LOC429791), partial mRNA Length = 1080 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 292 gaacagcagcctctccaccac 312 ||||||||||||||||||||| Sbjct: 360 gaacagcagcctctccaccac 340
>gb|AC123804.3| Mus musculus BAC clone RP24-140B5 from chromosome 7, complete sequence Length = 145046 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 294 acagcagcctctccaccaccc 314 ||||||||||||||||||||| Sbjct: 36704 acagcagcctctccaccaccc 36724
>emb|AL161532.2|ATCHRIV32 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 32 Length = 198788 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 aatttcagagatcatcaaact 36 ||||||||||||||||||||| Sbjct: 17248 aatttcagagatcatcaaact 17268
>emb|AL050399.1|ATF25E4 Arabidopsis thaliana DNA chromosome 4, BAC clone F25E4 (ESSA project) Length = 80019 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 aatttcagagatcatcaaact 36 ||||||||||||||||||||| Sbjct: 38599 aatttcagagatcatcaaact 38619
>emb|AJ719972.1| Gallus gallus mRNA for hypothetical protein, clone 8o19 Length = 3406 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 ccggcggcgccggcctgcaccagga 293 |||||||||||||||||| |||||| Sbjct: 2 ccggcggcgccggcctgccccagga 26
>ref|NM_001008450.1| Gallus gallus leucine zipper and CTNNBIP1 domain containing (LZIC), mRNA Length = 3406 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 269 ccggcggcgccggcctgcaccagga 293 |||||||||||||||||| |||||| Sbjct: 2 ccggcggcgccggcctgccccagga 26
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 268 gccggcggcgccggcctgcac 288 ||||||||||||||||||||| Sbjct: 2400248 gccggcggcgccggcctgcac 2400268 Score = 40.1 bits (20), Expect = 5.3 Identities = 32/36 (88%) Strand = Plus / Plus Query: 264 gatcgccggcggcgccggcctgcaccaggaacagca 299 |||| |||||||| |||||||| | ||||||||||| Sbjct: 2006928 gatccccggcggccccggcctgaagcaggaacagca 2006963
>ref|XM_220904.3| PREDICTED: Rattus norvegicus similar to hypothetical protein 4932418K24 (predicted) (LOC287646), mRNA Length = 2575 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 296 agcagcctctccaccaccccg 316 ||||||||||||||||||||| Sbjct: 2078 agcagcctctccaccaccccg 2098
>emb|CR450781.12| Zebrafish DNA sequence from clone DKEY-20O6 in linkage group 24, complete sequence Length = 215010 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 ccaaaaatggcaaaattagga 95 ||||||||||||||||||||| Sbjct: 96476 ccaaaaatggcaaaattagga 96456
>gb|AC137126.13| Mus musculus chromosome 15, clone RP24-250I9, complete sequence Length = 193459 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 95 aaacctaaaaaagacaaattg 115 ||||||||||||||||||||| Sbjct: 124837 aaacctaaaaaagacaaattg 124817
>gb|AC139375.3| Mus musculus chromosome 3, clone RP24-217F16, complete sequence Length = 152001 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tgcatgtgatatcaagaagg 171 |||||||||||||||||||| Sbjct: 121059 tgcatgtgatatcaagaagg 121040
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgatcgccggcggcgccggc 282 |||||||||||||||||||| Sbjct: 3471188 cgatcgccggcggcgccggc 3471207
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctc 259 |||||||||||||||||||| Sbjct: 281995 tctctctcgccctttccctc 281976
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0045P14, complete sequence Length = 121894 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aaaaaagacaaattgccatgcagg 124 |||||| ||||||||||||||||| Sbjct: 7510 aaaaaaaacaaattgccatgcagg 7487
>gb|AY244707.1| Pseudomonas fluorescens response regulator (gacA) gene, complete cds Length = 645 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 300 gccggcggcgccggcctgca 281
>gb|AY538586.1| Xanthomonas campestris 3-alpha-hydroxysteroid dehydrogenase, benzaldehyde dehydrogenase II, and hypothetical proteins genes, complete cds Length = 3148 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 2805 gccggcggcgccggcctgca 2786
>gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11.4, complete sequence Length = 141582 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atcttcacagccaaaaatggcaaa 88 ||||||||||||| |||||||||| Sbjct: 18786 atcttcacagccagaaatggcaaa 18763
>gb|AF241728.2| Homo sapiens chromosome X clone RP4-646N3 map p11.4, complete sequence Length = 133506 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atcttcacagccaaaaatggcaaa 88 ||||||||||||| |||||||||| Sbjct: 126452 atcttcacagccagaaatggcaaa 126429
>gb|AY359472.4| Xanthomonas campestris putative responder (smeR), putative kinase sensor (smeS), and inner membrane protein (smeA) genes, complete cds; and unknown genes Length = 9200 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 2780 gccggcggcgccggcctgca 2761
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 ccaggaacagcagcctctccacca 311 |||||||||||||| ||||||||| Sbjct: 1565587 ccaggaacagcagcatctccacca 1565564
>gb|AY308940.1| Canis familiaris isolate cOR5F3 olfactory receptor family 5 subfamily F gene, partial cds Length = 626 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 aggatgcattcagttgtggc 193 |||||||||||||||||||| Sbjct: 472 aggatgcattcagttgtggc 491
>ref|XM_540661.2| PREDICTED: Canis familiaris similar to Olfactory receptor 5F1 (Olfactory receptor 11-10) (OR11-10) (LOC483541), mRNA Length = 924 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aggatgcattcagttgtggc 193 |||||||||||||||||||| Sbjct: 341 aggatgcattcagttgtggc 322
>ref|XM_571497.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF00880) partial mRNA Length = 2266 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctc 259 |||||||||||||||||||| Sbjct: 2178 tctctctcgccctttccctc 2159
>gb|AF502413.1| Pseudomonas aeruginosa DSM 1128 response regulator GacA (gacA) gene, partial cds Length = 409 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 114 gccggcggcgccggcctgca 95
>emb|X61458.1|SMPHY1G S.martensii phy1 gene for phytochrome Length = 4191 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 ccaggaacagcagcctctccacca 311 ||||| |||||||||||||||||| Sbjct: 2286 ccaggtacagcagcctctccacca 2263
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cggcggcgccggcctgcacc 289 |||||||||||||||||||| Sbjct: 790060 cggcggcgccggcctgcacc 790079
>gb|AF523440.1| Influenza A virus (A/Duck/Hong Kong/289/78(H9N2)) polymerase (PB1) gene, partial cds Length = 1533 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 aaaatggcaaaattaggaaa 97 |||||||||||||||||||| Sbjct: 1063 aaaatggcaaaattaggaaa 1082
>emb|CR388386.12| Zebrafish DNA sequence from clone DKEY-253N6 in linkage group 22, complete sequence Length = 143089 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gaacagcagcctctccacca 311 |||||||||||||||||||| Sbjct: 38106 gaacagcagcctctccacca 38087
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 263 cgatcgccggcggcgccggc 282 |||||||||||||||||||| Sbjct: 1974146 cgatcgccggcggcgccggc 1974165
>gb|AY251005.1| Pseudomonas fluorescens response regulator GacA (gacA) gene, complete cds Length = 645 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 300 gccggcggcgccggcctgca 281
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 261 gccgatcgccggcggcgccggcctgcaccagg 292 ||||||| ||||| |||||||||||| ||||| Sbjct: 3308410 gccgatctccggccgcgccggcctgcgccagg 3308379 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 cgatcgccggcggcgccggc 282 |||||||||||||||||||| Sbjct: 2490740 cgatcgccggcggcgccggc 2490721 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 cgccggcggcgccggcctgc 286 |||||||||||||||||||| Sbjct: 371404 cgccggcggcgccggcctgc 371385 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gccgatcgccggcggcgccg 280 |||||||||||||||||||| Sbjct: 231823 gccgatcgccggcggcgccg 231842
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcgccggcggcgccggcctg 285 |||||||||||||||||||| Sbjct: 28217 tcgccggcggcgccggcctg 28236
>gb|AC181984.1| Pan troglodytes chromosome X clone CH251-244H4 map human ortholog p11.4, complete sequence Length = 184116 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atcttcacagccaaaaatggcaaa 88 ||||||||||||| |||||||||| Sbjct: 174564 atcttcacagccagaaatggcaaa 174541
>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence Length = 187313 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 atcttcacagccaaaaatggcaaa 88 ||||||||||||| |||||||||| Sbjct: 92450 atcttcacagccagaaatggcaaa 92427
>ref|XM_624954.1| PREDICTED: Apis mellifera similar to CG13921-PA, isoform A (LOC552578), mRNA Length = 3489 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 293 aacagcagcctctccaccaccccg 316 ||||||||||| |||||||||||| Sbjct: 1213 aacagcagcctgtccaccaccccg 1236
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctc 259 |||||||||||||||||||| Sbjct: 5083890 tctctctcgccctttccctc 5083871
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aaaaaagacaaattgccatgcagg 124 |||||| ||||||||||||||||| Sbjct: 10817990 aaaaaaaacaaattgccatgcagg 10817967
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctcggcc 263 |||||||| ||||||||||||||| Sbjct: 3098093 tctctctctccctttccctcggcc 3098070
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gccgatcgccggcggcgccggcct 284 ||||||||||||||||| |||||| Sbjct: 24488739 gccgatcgccggcggcgtcggcct 24488716
>gb|AC073875.6| Homo sapiens BAC clone RP11-594C24 from 2, complete sequence Length = 145028 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 gaagaagatacttgcatgtg 159 |||||||||||||||||||| Sbjct: 111191 gaagaagatacttgcatgtg 111172
>gb|AE004898.1| Pseudomonas aeruginosa PAO1, section 459 of 529 of the complete genome Length = 10927 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcgccggcggcgccggcctg 285 |||||||||||||||||||| Sbjct: 1315 tcgccggcggcgccggcctg 1334
>gb|AE004687.1| Pseudomonas aeruginosa PAO1, section 248 of 529 of the complete genome Length = 10686 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 3268 gccggcggcgccggcctgca 3287
>gb|AE004637.1| Pseudomonas aeruginosa PAO1, section 198 of 529 of the complete genome Length = 10174 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcgccggcggcgccggcctg 285 |||||||||||||||||||| Sbjct: 871 tcgccggcggcgccggcctg 890
>gb|AC008670.6| Homo sapiens chromosome 5 clone CTB-36O1, complete sequence Length = 126034 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 agaagggtaggatgcattca 185 |||||||||||||||||||| Sbjct: 121293 agaagggtaggatgcattca 121274
>gb|AC026368.37| Homo sapiens 12 BAC RP11-103B5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 177594 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 288 ccaggaacagcagcctctcc 307 |||||||||||||||||||| Sbjct: 79903 ccaggaacagcagcctctcc 79884
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 cggcggcgccggcctgcacc 289 |||||||||||||||||||| Sbjct: 1839226 cggcggcgccggcctgcacc 1839245
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 5.3 Identities = 29/32 (90%) Strand = Plus / Minus Query: 261 gccgatcgccggcggcgccggcctgcaccagg 292 ||||||| |||||| ||||||||||| ||||| Sbjct: 4331972 gccgatcaccggcgtcgccggcctgcgccagg 4331941
>emb|AJ431437.1|CFA431437 Canis familiaris partial OR08C01 gene for olfactory receptor Length = 650 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 aggatgcattcagttgtggc 193 |||||||||||||||||||| Sbjct: 142 aggatgcattcagttgtggc 123
>dbj|AP005560.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1178_D01 Length = 121768 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctcggcc 263 |||||||| ||||||||||||||| Sbjct: 118059 tctctctctccctttccctcggcc 118036
>dbj|AP005727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0038I09 Length = 153520 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctcggcc 263 |||||||| ||||||||||||||| Sbjct: 7756 tctctctctccctttccctcggcc 7733
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1792_D02 Length = 141649 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gccgatcgccggcggcgccggcct 284 ||||||||||||||||| |||||| Sbjct: 116945 gccgatcgccggcggcgtcggcct 116922
>dbj|AP003980.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1014_H03 Length = 132696 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 gccgatcgccggcggcgccggcct 284 ||||||||||||||||| |||||| Sbjct: 2840 gccgatcgccggcggcgtcggcct 2817
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cggccgatcgccggcggcgc 278 |||||||||||||||||||| Sbjct: 973877 cggccgatcgccggcggcgc 973858
>emb|BX649585.4| Zebrafish DNA sequence from clone CH211-123B7 in linkage group 22, complete sequence Length = 153749 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 gaacagcagcctctccacca 311 |||||||||||||||||||| Sbjct: 108740 gaacagcagcctctccacca 108759
>emb|BX284688.13| Zebrafish DNA sequence from clone DKEY-71K16 in linkage group 25, complete sequence Length = 236784 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 caaaaatggcaaaattagga 95 |||||||||||||||||||| Sbjct: 33426 caaaaatggcaaaattagga 33445
>gb|AC006077.1|AC006077 Homo sapiens chromosome 5, P1 clone 254f11 (LBNL H62), complete sequence Length = 87424 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 agaagggtaggatgcattca 185 |||||||||||||||||||| Sbjct: 56123 agaagggtaggatgcattca 56142
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cgccggcggcgccggcctgc 286 |||||||||||||||||||| Sbjct: 1612862 cgccggcggcgccggcctgc 1612881
>gb|U89528.1|PAU89528 Pseudomonas aeruginosa response regulator GacA (gacA) gene, complete cds Length = 780 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 268 gccggcggcgccggcctgca 287 |||||||||||||||||||| Sbjct: 345 gccggcggcgccggcctgca 326
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 101 aaaaaagacaaattgccatgcagg 124 |||||| ||||||||||||||||| Sbjct: 10897179 aaaaaaaacaaattgccatgcagg 10897156
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctc 259 |||||||||||||||||||| Sbjct: 5083872 tctctctcgccctttccctc 5083853
>emb|AL713901.3|CNS07YQ1 Oryza sativa chromosome 12, . BAC OJ1102_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 112231 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 tctctctcgccctttccctc 259 |||||||||||||||||||| Sbjct: 54543 tctctctcgccctttccctc 54524
>gb|AC093471.8| Mus musculus chromosome 3, clone RP23-29M11, complete sequence Length = 193703 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tgcatgtgatatcaagaagg 171 |||||||||||||||||||| Sbjct: 74390 tgcatgtgatatcaagaagg 74371
>gb|L24487.1|SH1DNAPOLA Pseudorabies virus DNA polymerase gene, partial cds Length = 3144 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcgccggcggcgccggcctg 285 |||||||||||||||||||| Sbjct: 2612 tcgccggcggcgccggcctg 2631 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,753,592 Number of Sequences: 3902068 Number of extensions: 3753592 Number of successful extensions: 85800 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 83464 Number of HSP's gapped (non-prelim): 2333 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
