ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32h08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 141 2e-30
2gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 141 2e-30
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
4dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
5dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.38
6emb|AL645760.15| Mouse DNA sequence from clone DN-262D11 on chro... 42 1.5
7gb|AC062016.5| Homo sapiens BAC clone RP11-59P4 from 2, complete... 42 1.5
8gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid p... 42 1.5
9emb|AL606757.11| Mouse DNA sequence from clone RP23-356K2 on chr... 42 1.5
10gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.0
11gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.0
12gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.0
13gb|BC046426.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cD... 40 6.0
14gb|BC054441.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cD... 40 6.0
15gb|AC164882.2| Mus musculus BAC clone RP23-88F16 from chromosome... 40 6.0
16gb|AF496108.1| Lactobacillus delbrueckii subsp. lactis 50s ribos... 40 6.0
17gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.0
18gb|BC030419.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cD... 40 6.0
19emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment ... 40 6.0
20gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, co... 40 6.0
21dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 6.0
22gb|AC037450.6| Homo sapiens chromosome 8, clone RP11-226G12, com... 40 6.0
23dbj|AK144730.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 40 6.0
24ref|NM_181316.3| Mus musculus RIKEN cDNA E130103I17 gene (E13010... 40 6.0
25dbj|AK166297.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cD... 40 6.0
26gb|AC020930.7|AC020930 Homo sapiens chromosome 5 clone CTD-2239K... 40 6.0
27dbj|AK028200.1| Mus musculus 11 days embryo whole body cDNA, RIK... 40 6.0
28dbj|AK086114.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 6.0
29dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
30gb|AC079163.5| Homo sapiens BAC clone RP11-707K3 from 2, complet... 40 6.0
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
32gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, compl... 40 6.0
33dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
34gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, compl... 40 6.0
35gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q... 40 6.0
36emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 6.0
37dbj|AB103396.1| Ixodes ovatus genes for 5.8S ribosomal RNA, inte... 40 6.0
38dbj|AB103049.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRN... 40 6.0
39dbj|AB103046.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRN... 40 6.0
40dbj|AB103044.1| Ixodes ovatus genes for ITS2, 28S rRNA, partial ... 40 6.0
41dbj|AB103043.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRN... 40 6.0
42emb|CT033757.6| Mouse DNA sequence from clone RP23-125M6 on chro... 40 6.0
43gb|U85993.1|MMU85993 Mus musculus clone IMAGE:349147 unknown pro... 40 6.0
44dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.0

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 275     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2976971 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2976912

                                                                           
Query: 335     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2976911 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976852

                             
Query: 395     gngtacttcgccag 408
               | ||||||| ||||
Sbjct: 2976851 gcgtacttctccag 2976838



 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 275     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2948575 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948516

                                                                           
Query: 335     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2948515 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948456

                             
Query: 395     gngtacttcgccag 408
               | ||||||| ||||
Sbjct: 2948455 gcgtacttctccag 2948442



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 326     ctctgctgcacgaagccgacgacgta 351
               ||||||||||||| ||||||||||||
Sbjct: 2941843 ctctgctgcacgatgccgacgacgta 2941818



to top

>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0016I15,
              complete sequence
          Length = 166282

 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                          
Query: 275    agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
              ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 114458 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 114399

                                                                          
Query: 335    acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
              | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 114398 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 114339

                            
Query: 395    gngtacttcgccag 408
              | ||||||| ||||
Sbjct: 114338 gcgtacttctccag 114325



 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                         
Query: 275   agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
             ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 86062 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 86003

                                                                         
Query: 335   acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
             | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 86002 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 85943

                           
Query: 395   gngtacttcgccag 408
             | ||||||| ||||
Sbjct: 85942 gcgtacttctccag 85929



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 326   ctctgctgcacgaagccgacgacgta 351
             ||||||||||||| ||||||||||||
Sbjct: 79330 ctctgctgcacgatgccgacgacgta 79305



to top

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 275     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2977082 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2977023

                                                                           
Query: 335     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2977022 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2976963

                             
Query: 395     gngtacttcgccag 408
               | ||||||| ||||
Sbjct: 2976962 gcgtacttctccag 2976949



 Score =  141 bits (71), Expect = 2e-30
 Identities = 118/134 (88%)
 Strand = Plus / Minus

                                                                           
Query: 275     agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
               ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 2948686 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 2948627

                                                                           
Query: 335     acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
               | ||||||||||||||| || ||||||| |||||||||| ||||||||| || |||||||
Sbjct: 2948626 atgaagccgacgacgtaggccgccgtgatcagccggatgccgcgccaccgcctctcctcg 2948567

                             
Query: 395     gngtacttcgccag 408
               | ||||||| ||||
Sbjct: 2948566 gcgtacttctccag 2948553



 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 326     ctctgctgcacgaagccgacgacgta 351
               ||||||||||||| ||||||||||||
Sbjct: 2941954 ctctgctgcacgatgccgacgacgta 2941929



to top

>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
            insert sequence
          Length = 1661

 Score =  133 bits (67), Expect = 5e-28
 Identities = 117/134 (87%)
 Strand = Plus / Minus

                                                                        
Query: 275  agcaaccccgacaggaacttctctctgaggaacttgatcgccgggttgctgctctgctgc 334
            ||||| || |||| ||||||||| ||||||||||||||| |||||||| |||||||||| 
Sbjct: 1274 agcaatcctgacaagaacttctccctgaggaacttgatcaccgggttggtgctctgctgg 1215

                                                                        
Query: 335  acgaagccgacgacgtacgcggccgtgaccagccggatggcgcgccacctccgctcctcg 394
            | ||||||||||||||| || ||||||  |||||||||| ||||||||| || |||||||
Sbjct: 1214 atgaagccgacgacgtaggccgccgtggtcagccggatgccgcgccaccgcctctcctcg 1155

                          
Query: 395  gngtacttcgccag 408
            | ||||||| ||||
Sbjct: 1154 gcgtacttctccag 1141



to top

>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
            insert sequence
          Length = 1590

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 326  ctctgctgcacgaagccgacgacgta 351
            ||||||||||||| ||||||||||||
Sbjct: 1359 ctctgctgcacgatgccgacgacgta 1334



to top

>emb|AL645760.15| Mouse DNA sequence from clone DN-262D11 on chromosome 3 Contains the 5'
             end of the Man1b gene for mannosidase 1 beta, a pseudogene
             similar to arylsulfatase A (Arsa) and a CpG island,
             complete sequence
          Length = 135825

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 85    aagataattattttacatctg 105
             |||||||||||||||||||||
Sbjct: 29126 aagataattattttacatctg 29106



to top

>gb|AC062016.5| Homo sapiens BAC clone RP11-59P4 from 2, complete sequence
          Length = 187799

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 31     aaaaggaaacaaatcttaaag 51
              |||||||||||||||||||||
Sbjct: 166903 aaaaggaaacaaatcttaaag 166923



to top

>gb|AE001438.3| Clostridium acetobutylicum ATCC 824 megaplasmid pSOL1, complete
             sequence
          Length = 192000

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    gaaaaggaaacaaatcttaaa 50
             |||||||||||||||||||||
Sbjct: 20866 gaaaaggaaacaaatcttaaa 20886



to top

>emb|AL606757.11| Mouse DNA sequence from clone RP23-356K2 on chromosome 3, complete
              sequence
          Length = 127113

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 85     aagataattattttacatctg 105
              |||||||||||||||||||||
Sbjct: 123818 aagataattattttacatctg 123798



to top

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     cgtagtcggccatgtcgaccatca 266
               |||||| |||||||||||||||||
Sbjct: 3121354 cgtagtgggccatgtcgaccatca 3121377



to top

>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 243    cgtagtcggccatgtcgaccatca 266
              |||||| |||||||||||||||||
Sbjct: 811765 cgtagtgggccatgtcgaccatca 811742



to top

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     cgtagtcggccatgtcgaccatca 266
               |||||| |||||||||||||||||
Sbjct: 2666685 cgtagtgggccatgtcgaccatca 2666708



to top

>gb|BC046426.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cDNA clone MGC:51441
            IMAGE:3601505), complete cds
          Length = 3408

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3317 aattattttacatctggatc 3298



to top

>gb|BC054441.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cDNA clone
            IMAGE:6468740), complete cds
          Length = 1654

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 1564 aattattttacatctggatc 1545



to top

>gb|AC164882.2| Mus musculus BAC clone RP23-88F16 from chromosome 9, complete sequence
          Length = 203020

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    aattattttacatctggatc 109
             ||||||||||||||||||||
Sbjct: 41469 aattattttacatctggatc 41488



to top

>gb|AF496108.1| Lactobacillus delbrueckii subsp. lactis 50s ribosomal protein L19
           gene, partial cds
          Length = 318

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 344 acgacgtacgcggccgtgac 363
           ||||||||||||||||||||
Sbjct: 143 acgacgtacgcggccgtgac 124



to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 411     cggcctcggcgctcccgtgcccgc 434
               ||||||||||||| ||||||||||
Sbjct: 2520468 cggcctcggcgctgccgtgcccgc 2520445



to top

>gb|BC030419.1| Mus musculus RIKEN cDNA E130103I17 gene, mRNA (cDNA clone
            IMAGE:5368562), partial cds
          Length = 2777

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 2669 aattattttacatctggatc 2650



to top

>emb|BX294143.1| Pirellula sp. strain 1 complete genome; segment 11/24
          Length = 303250

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 243    cgtagtcggccatgtcgaccatca 266
              |||||| |||||||||||||||||
Sbjct: 230174 cgtagtgggccatgtcgaccatca 230151



to top

>gb|AC124657.5| Homo sapiens chromosome 11, clone RP11-624D11, complete sequence
          Length = 155985

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 31     aaaaggaaacaaatcttaaagagc 54
              ||||||||||||||| ||||||||
Sbjct: 132165 aaaaggaaacaaatcataaagagc 132142



to top

>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 360     tgaccagccggatggcgcgc 379
               ||||||||||||||||||||
Sbjct: 1479193 tgaccagccggatggcgcgc 1479174



to top

>gb|AC037450.6| Homo sapiens chromosome 8, clone RP11-226G12, complete sequence
          Length = 169876

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    tactgatgtgagaaaaggaa 38
             ||||||||||||||||||||
Sbjct: 21405 tactgatgtgagaaaaggaa 21386



to top

>dbj|AK144730.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
            library, clone:G730027N14 product:hypothetical protein,
            full insert sequence
          Length = 3403

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3332 aattattttacatctggatc 3313



to top

>ref|NM_181316.3| Mus musculus RIKEN cDNA E130103I17 gene (E130103I17Rik), mRNA
          Length = 3408

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3317 aattattttacatctggatc 3298



to top

>dbj|AK166297.1| Mus musculus mammary gland RCB-0526 Jyg-MC(A) cDNA, RIKEN full-length
            enriched library, clone:G830032M02 product:hypothetical
            protein, full insert sequence
          Length = 3363

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3288 aattattttacatctggatc 3269



to top

>gb|AC020930.7|AC020930 Homo sapiens chromosome 5 clone CTD-2239K17, complete sequence
          Length = 107160

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     agttgtaagataattatttt 98
              ||||||||||||||||||||
Sbjct: 100661 agttgtaagataattatttt 100680



to top

>dbj|AK028200.1| Mus musculus 11 days embryo whole body cDNA, RIKEN full-length
            enriched library, clone:2700038G09 product:similar to
            PTH-RESPONSIVE OSTEOSARCOMA B1 PROTEIN [Homo sapiens],
            full insert sequence
          Length = 3466

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3395 aattattttacatctggatc 3376



to top

>dbj|AK086114.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930006P03 product:similar to
            PTH-RESPONSIVE OSTEOSARCOMA B1 PROTEIN [Homo sapiens],
            full insert sequence
          Length = 3348

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 90   aattattttacatctggatc 109
            ||||||||||||||||||||
Sbjct: 3277 aattattttacatctggatc 3258



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 39       acaaatcttaaagagctttcatcc 62
                ||||||||||||||| ||||||||
Sbjct: 22669535 acaaatcttaaagagatttcatcc 22669512



to top

>gb|AC079163.5| Homo sapiens BAC clone RP11-707K3 from 2, complete sequence
          Length = 169771

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     agttgtaagataattatttt 98
              ||||||||||||||||||||
Sbjct: 139226 agttgtaagataattatttt 139245



to top

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 418     ggcgctcccgtgcccgccgg 437
               ||||||||||||||||||||
Sbjct: 8012988 ggcgctcccgtgcccgccgg 8012969



to top

>gb|AC008939.8| Homo sapiens chromosome 5 clone CTD-2316B1, complete sequence
          Length = 112755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    agttgtaagataattatttt 98
             ||||||||||||||||||||
Sbjct: 21044 agttgtaagataattatttt 21063



to top

>dbj|AP003932.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1773_H01
          Length = 146543

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    acaaatcttaaagagctttcatcc 62
             ||||||||||||||| ||||||||
Sbjct: 87433 acaaatcttaaagagatttcatcc 87410



to top

>gb|AC154342.2| Mus musculus BAC clone RP23-227D10 from 17, complete sequence
          Length = 199709

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 24    atgtgagaaaaggaaacaaa 43
             ||||||||||||||||||||
Sbjct: 17838 atgtgagaaaaggaaacaaa 17819



to top

>gb|AC005066.1|AC005066 Homo sapiens BAC clone CTB-118P15 from 8q21, complete sequence
          Length = 226916

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   tactgatgtgagaaaaggaa 38
            ||||||||||||||||||||
Sbjct: 9266 tactgatgtgagaaaaggaa 9285



to top

>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   gcatcaaatcgatttgattg 167
             ||||||||||||||||||||
Sbjct: 18406 gcatcaaatcgatttgattg 18387



to top

>dbj|AB103396.1| Ixodes ovatus genes for 5.8S ribosomal RNA, internal transcribed
           spacer 2, 28S ribosomal RNA, partial and complete
           sequence
          Length = 831

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  atgtgagaaaaggaaacaaa 43
           ||||||||||||||||||||
Sbjct: 295 atgtgagaaaaggaaacaaa 314



to top

>dbj|AB103049.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRNA, partial and
           complete sequences, strain:NIO14
          Length = 831

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  atgtgagaaaaggaaacaaa 43
           ||||||||||||||||||||
Sbjct: 293 atgtgagaaaaggaaacaaa 312



to top

>dbj|AB103046.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRNA, partial and
           complete sequences, strain:NIO11
          Length = 836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  atgtgagaaaaggaaacaaa 43
           ||||||||||||||||||||
Sbjct: 296 atgtgagaaaaggaaacaaa 315



to top

>dbj|AB103044.1| Ixodes ovatus genes for ITS2, 28S rRNA, partial sequences,
           strain:NIO9
          Length = 680

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  atgtgagaaaaggaaacaaa 43
           ||||||||||||||||||||
Sbjct: 145 atgtgagaaaaggaaacaaa 164



to top

>dbj|AB103043.1| Ixodes ovatus genes for 5.8S rRNA, ITS2, 28S rRNA, partial and
           complete sequences, strain:NIO8
          Length = 838

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 24  atgtgagaaaaggaaacaaa 43
           ||||||||||||||||||||
Sbjct: 297 atgtgagaaaaggaaacaaa 316



to top

>emb|CT033757.6| Mouse DNA sequence from clone RP23-125M6 on chromosome 17, complete
             sequence
          Length = 44371

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 24    atgtgagaaaaggaaacaaa 43
             ||||||||||||||||||||
Sbjct: 14318 atgtgagaaaaggaaacaaa 14337



to top

>gb|U85993.1|MMU85993 Mus musculus clone IMAGE:349147 unknown protein mRNA, partial cds
          Length = 945

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 90  aattattttacatctggatc 109
           ||||||||||||||||||||
Sbjct: 870 aattattttacatctggatc 851



to top

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 392     tcggngtacttcgccagggcggc 414
               |||| ||||||||||||||||||
Sbjct: 2762888 tcggggtacttcgccagggcggc 2762866


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,727,629
Number of Sequences: 3902068
Number of extensions: 3727629
Number of successful extensions: 77548
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76951
Number of HSP's gapped (non-prelim): 597
length of query: 444
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 422
effective length of database: 17,147,199,772
effective search space: 7236118303784
effective search space used: 7236118303784
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top