Clone Name | rbart32h07 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | Y020_YERPS (Q66GG2) UPF0241 protein YPTB0020 | 30 | 3.1 | 2 | Y020_YERPE (Q8ZJR9) UPF0241 protein YPO0020/y3808/YP0021 | 30 | 3.1 | 3 | SELA_GEOSL (P61736) L-seryl-tRNA(Sec) selenium transferase (EC 2... | 28 | 8.9 |
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>Y020_YERPS (Q66GG2) UPF0241 protein YPTB0020| Length = 188 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = -3 Query: 458 RSGRRTASVNVKGNKVPLYGSGPTLMAQPXXXXXXXXKVIPVPMVLRTTVRSQAY---VL 288 R ++ S N G + + GS +Q +PVP+V+ + V++++ V Sbjct: 38 RKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVE 97 Query: 287 GALVKPRFTKEVECKVVMNPAKLN 216 +VKPR T E E + N +L+ Sbjct: 98 KNVVKPRLTPEEELAKLENDERLD 121
>Y020_YERPE (Q8ZJR9) UPF0241 protein YPO0020/y3808/YP0021| Length = 188 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Frame = -3 Query: 458 RSGRRTASVNVKGNKVPLYGSGPTLMAQPXXXXXXXXKVIPVPMVLRTTVRSQAY---VL 288 R ++ S N G + + GS +Q +PVP+V+ + V++++ V Sbjct: 38 RKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVE 97 Query: 287 GALVKPRFTKEVECKVVMNPAKLN 216 +VKPR T E E + N +L+ Sbjct: 98 KNVVKPRLTPEEELAKLENDERLD 121
>SELA_GEOSL (P61736) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)| (Cysteinyl-tRNA(Sec) selenium transferase) (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec) synthase) Length = 462 Score = 28.5 bits (62), Expect = 8.9 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%) Frame = +1 Query: 160 TNERLDHEYLHAFSSETGLLSLAGFITTLHSTSLVNLGFT---NAPST*ACDRTV---VR 321 TN +Y A +SETGLL +HS++ +GFT AP A R + V Sbjct: 200 TNRTHSRDYRQAVTSETGLL------LKVHSSNFAVVGFTAEVTAPEMVAIGRELGLPVM 253 Query: 322 STIGTG 339 + IG+G Sbjct: 254 ADIGSG 259 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,505,662 Number of Sequences: 219361 Number of extensions: 475273 Number of successful extensions: 1392 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1391 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1392 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)