ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32h07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y020_YERPS (Q66GG2) UPF0241 protein YPTB0020 30 3.1
2Y020_YERPE (Q8ZJR9) UPF0241 protein YPO0020/y3808/YP0021 30 3.1
3SELA_GEOSL (P61736) L-seryl-tRNA(Sec) selenium transferase (EC 2... 28 8.9

>Y020_YERPS (Q66GG2) UPF0241 protein YPTB0020|
          Length = 188

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 458 RSGRRTASVNVKGNKVPLYGSGPTLMAQPXXXXXXXXKVIPVPMVLRTTVRSQAY---VL 288
           R  ++  S N  G +  + GS     +Q           +PVP+V+ + V++++    V 
Sbjct: 38  RKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVE 97

Query: 287 GALVKPRFTKEVECKVVMNPAKLN 216
             +VKPR T E E   + N  +L+
Sbjct: 98  KNVVKPRLTPEEELAKLENDERLD 121



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>Y020_YERPE (Q8ZJR9) UPF0241 protein YPO0020/y3808/YP0021|
          Length = 188

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
 Frame = -3

Query: 458 RSGRRTASVNVKGNKVPLYGSGPTLMAQPXXXXXXXXKVIPVPMVLRTTVRSQAY---VL 288
           R  ++  S N  G +  + GS     +Q           +PVP+V+ + V++++    V 
Sbjct: 38  RKRQKKHSGNRSGARTNVEGSNKKGHSQTQEKDPRVGSKVPVPLVIESQVKAKSMPKPVE 97

Query: 287 GALVKPRFTKEVECKVVMNPAKLN 216
             +VKPR T E E   + N  +L+
Sbjct: 98  KNVVKPRLTPEEELAKLENDERLD 121



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>SELA_GEOSL (P61736) L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1)|
           (Cysteinyl-tRNA(Sec) selenium transferase)
           (Selenocysteine synthase) (Selenocysteinyl-tRNA(Sec)
           synthase)
          Length = 462

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +1

Query: 160 TNERLDHEYLHAFSSETGLLSLAGFITTLHSTSLVNLGFT---NAPST*ACDRTV---VR 321
           TN     +Y  A +SETGLL        +HS++   +GFT    AP   A  R +   V 
Sbjct: 200 TNRTHSRDYRQAVTSETGLL------LKVHSSNFAVVGFTAEVTAPEMVAIGRELGLPVM 253

Query: 322 STIGTG 339
           + IG+G
Sbjct: 254 ADIGSG 259


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,505,662
Number of Sequences: 219361
Number of extensions: 475273
Number of successful extensions: 1392
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1392
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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