ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32h01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VN1R2_HUMAN (Q8NFZ6) Vomeronasal type-1 receptor 2 (V1r-like rec... 29 2.5
2VC02_VACCV (P17371) Kelch repeat protein C2 29 3.2
3VC02_VACCT (Q9JFG1) Kelch repeat protein C2 29 3.2
4VC02_VACCC (P21037) Kelch repeat protein C2 29 3.2
5VC02_RABPU (Q6RZS3) Kelch repeat protein C2 29 3.2
6VC02_ECTVM (Q8JLI4) Kelch repeat protein C2 29 3.2
7VC02_CWPXG (P87617) Kelch repeat protein C2 29 3.2
8RK4_SPIOL (O49937) 50S ribosomal protein L4, chloroplast precurs... 28 7.2

>VN1R2_HUMAN (Q8NFZ6) Vomeronasal type-1 receptor 2 (V1r-like receptor 2)|
           (hGPCR25)
          Length = 395

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
 Frame = +1

Query: 190 Q*TSQLCLPNIFT*KS--NSDLQGVNGL---FACCKNVGLFCYVVLVLYPHVSWW 339
           Q    +C  N++   S  N  +Q +  L   FA C  +    YV L L+ + SWW
Sbjct: 293 QQVQHICRNNLYPNSSPGNRAIQSILALVSTFALCYALSFITYVYLALFDNSSWW 347



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>VC02_VACCV (P17371) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLETKK 286



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>VC02_VACCT (Q9JFG1) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLETKK 286



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>VC02_VACCC (P21037) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLETKK 286



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>VC02_RABPU (Q6RZS3) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLETKK 286



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>VC02_ECTVM (Q8JLI4) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLKTKK 286



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>VC02_CWPXG (P87617) Kelch repeat protein C2|
          Length = 512

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 191 NKLHNCVYQISSLENQIQIFKVSMVCLPVAK 283
           N LHNC+Y I  + N   ++ VS V L   K
Sbjct: 256 NVLHNCLYIIGGMINNRHVYSVSRVDLKTKK 286



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>RK4_SPIOL (O49937) 50S ribosomal protein L4, chloroplast precursor (R-protein|
           L4)
          Length = 293

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 14  DTFYYLRFHKPTKLHNTLHKGLHTHKLGKRANT 112
           +TF  L+   P K    +H+GL TH   KR  T
Sbjct: 67  ETFLNLKTAPPEKARAVVHRGLITHLQNKRRGT 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,580,323
Number of Sequences: 219361
Number of extensions: 909375
Number of successful extensions: 1685
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1685
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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