ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32g10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476744.1| Oryza sativa (japonica cultivar-group), mRNA 214 2e-52
2dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
3dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clon... 214 2e-52
4gb|AY104706.1| Zea mays PCO076122 mRNA sequence 121 2e-24
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
6dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
7dbj|AB024058.1| Hordeum vulgare Ids3 mRNA, complete cds 94 4e-16
8gb|BT016779.1| Zea mays clone Contig612 mRNA sequence 80 7e-12
9gb|AY110844.1| Zea mays CL28103_1 mRNA sequence 72 2e-09
10dbj|D10057.1|BLYIDS2 Hordeum vulgare ids-2 mRNA, complete cds 64 4e-07
11dbj|D15051.1|BLYIDS2NK Hordeum vulgare gene for ids2, complete cds 64 4e-07
12dbj|AB024007.1| Hordeum vulgare gene for IDS3, complete cds 58 2e-05
13dbj|D37796.1|BLYIDS3NK Barley gene for Ids3, complete cds 50 0.006
14gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome 44 0.37
15gb|U00096.2| Escherichia coli K-12 MG1655, complete genome 44 0.37
16dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome 44 0.37
17gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome 44 0.37
18gb|CP000034.1| Shigella dysenteriae Sd197, complete genome 44 0.37
19gb|U36841.1|ECU36841 Escherichia coli K-12 genome, approximately... 44 0.37
20gb|CP000036.1| Shigella boydii Sb227, complete genome 44 0.37
21gb|CP000038.1| Shigella sonnei Ss046, complete genome 44 0.37
22emb|AL022726.1|HS625H18 Human DNA sequence from clone RP4-625H18... 42 1.4
23gb|AC131011.5| Homo sapiens X BAC RP13-314C10 (Roswell Park Canc... 42 1.4
24gb|AC093132.2| Papio anubis clone RP41-51M7, complete sequence 42 1.4
25gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome ... 42 1.4
26emb|BX546504.9| Mouse DNA sequence from clone RP23-78N22 on chro... 42 1.4
27gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome... 42 1.4
28gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, comp... 40 5.7
29gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, comp... 40 5.7
30gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p... 40 5.7
31gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, comple... 40 5.7
32emb|AL160163.24| Human DNA sequence from clone RP5-973N23 on chr... 40 5.7
33emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001 40 5.7
34gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, compl... 40 5.7
35gb|AC093303.2| Homo sapiens chromosome 5 clone RP11-61K20, compl... 40 5.7
36gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, comple... 40 5.7
37gb|AC091887.3| Homo sapiens chromosome 5 clone RP11-118M9, compl... 40 5.7
38emb|BX950204.17| Zebrafish DNA sequence from clone DKEY-252P7 in... 40 5.7
39emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on ch... 40 5.7
40gb|AC133180.3| Mus musculus BAC clone RP24-137D2 from chromosome... 40 5.7
41gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome... 40 5.7 
>ref|XM_476744.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1298

 Score =  214 bits (108), Expect = 2e-52
 Identities = 270/324 (83%)
 Strand = Plus / Minus

                                                                        
Query: 89   ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 148
            ||||| |||||||| ||||| || |  |||||||||||||||||||| | ||||||||||
Sbjct: 1076 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1017

                                                                        
Query: 149  tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcg 208
            |||  ||| ||||| ||||| ||  ||||| ||  ||| || | ||||||||||| ||| 
Sbjct: 1016 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 957

                                                                        
Query: 209  gggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggttcgtgccagc 268
            || |||| | ||  ||||   | |||||| ||||| ||||||||||| || |  |||| |
Sbjct: 956  ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 897

                                                                        
Query: 269  gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 328
            |||| ||| |||||||||| |||||||||||||||||  |  ||||| ||||||||||||
Sbjct: 896  gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 837

                                                                        
Query: 329  agcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcg 388
            || |||||||| ||||||||||||||||||| ||| ||||  ||||||||||||||||||
Sbjct: 836  aggaggtggccaaagttgacgacgaaggcgtcggggacggggtcgacgttgatccagtcg 777

                                    
Query: 389  cccttgtaggagacctggaggccg 412
            || |||||||||||||||||||||
Sbjct: 776  ccattgtaggagacctggaggccg 753
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>dbj|AK121818.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099A15, full
            insert sequence
          Length = 1301

 Score =  214 bits (108), Expect = 2e-52
 Identities = 270/324 (83%)
 Strand = Plus / Minus

                                                                        
Query: 89   ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 148
            ||||| |||||||| ||||| || |  |||||||||||||||||||| | ||||||||||
Sbjct: 1079 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1020

                                                                        
Query: 149  tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcg 208
            |||  ||| ||||| ||||| ||  ||||| ||  ||| || | ||||||||||| ||| 
Sbjct: 1019 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 960

                                                                        
Query: 209  gggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggttcgtgccagc 268
            || |||| | ||  ||||   | |||||| ||||| ||||||||||| || |  |||| |
Sbjct: 959  ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 900

                                                                        
Query: 269  gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 328
            |||| ||| |||||||||| |||||||||||||||||  |  ||||| ||||||||||||
Sbjct: 899  gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 840

                                                                        
Query: 329  agcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcg 388
            || |||||||| ||||||||||||||||||| ||| ||||  ||||||||||||||||||
Sbjct: 839  aggaggtggccaaagttgacgacgaaggcgtcggggacggggtcgacgttgatccagtcg 780

                                    
Query: 389  cccttgtaggagacctggaggccg 412
            || |||||||||||||||||||||
Sbjct: 779  ccattgtaggagacctggaggccg 756
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>dbj|AK060318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F03, full
            insert sequence
          Length = 1298

 Score =  214 bits (108), Expect = 2e-52
 Identities = 270/324 (83%)
 Strand = Plus / Minus

                                                                        
Query: 89   ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 148
            ||||| |||||||| ||||| || |  |||||||||||||||||||| | ||||||||||
Sbjct: 1076 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 1017

                                                                        
Query: 149  tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcg 208
            |||  ||| ||||| ||||| ||  ||||| ||  ||| || | ||||||||||| ||| 
Sbjct: 1016 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 957

                                                                        
Query: 209  gggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggttcgtgccagc 268
            || |||| | ||  ||||   | |||||| ||||| ||||||||||| || |  |||| |
Sbjct: 956  ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 897

                                                                        
Query: 269  gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatctcg 328
            |||| ||| |||||||||| |||||||||||||||||  |  ||||| ||||||||||||
Sbjct: 896  gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatctcg 837

                                                                        
Query: 329  agcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcg 388
            || |||||||| ||||||||||||||||||| ||| ||||  ||||||||||||||||||
Sbjct: 836  aggaggtggccaaagttgacgacgaaggcgtcggggacggggtcgacgttgatccagtcg 777

                                    
Query: 389  cccttgtaggagacctggaggccg 412
            || |||||||||||||||||||||
Sbjct: 776  ccattgtaggagacctggaggccg 753
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>gb|AY104706.1| Zea mays PCO076122 mRNA sequence
          Length = 1382

 Score =  121 bits (61), Expect = 2e-24
 Identities = 220/273 (80%)
 Strand = Plus / Minus

                                                                        
Query: 139  gcgcatgaactcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgag 198
            |||| |||| ||| |||| ||||  |||||||||| |||||||||| | |||| || || 
Sbjct: 1064 gcgcttgaagtcggcgaaggtgagggtgcggtagcacggcgggttgtcgtcgctgaggaa 1005

                                                                        
Query: 199  ctcctccgcggggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggt 258
            |||  | |||||||||||| ||  ||||| ||  ||||||||||| || |||||||  ||
Sbjct: 1004 ctcggcggcggggccgatgaggcagtccgtggtgggcatgatgaacgtggccaccgttgt 945

                                                                        
Query: 259  tcgtgccagcgccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggt 318
             || ||||   ||  |||||||||| |||||||||||||||||||||| | |||||| ||
Sbjct: 944  ccgcgccactcccaggttggtcatcacccggtgctcgatgctcttcaagatcccgttcgt 885

                                                                        
Query: 319  cgcaatctcgagcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgtt 378
            | ||| ||| ||| ||   |||||||||||||||||||||  |||||| | ||| ||  |
Sbjct: 884  cacaacctcaagctggcatccgaagttgacgacgaaggcgccgggcacaggctccaccct 825

                                             
Query: 379  gatccagtcgcccttgtaggagacctggaggcc 411
            ||||||||||||| |||||| ||||| ||||||
Sbjct: 824  gatccagtcgcccctgtaggcgacctcgaggcc 792
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                           
Query: 325     ctcgagcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatcca 384
               |||||| |||||||| ||||||||||||||||||| ||| ||||  ||||||||||||||
Sbjct: 3732808 ctcgaggaggtggccaaagttgacgacgaaggcgtcggggacggggtcgacgttgatcca 3732749

                                           
Query: 385     gtcgcccttgtaggagacctggaggccg 412
               |||||| |||||||||||||||||||||
Sbjct: 3732748 gtcgccattgtaggagacctggaggccg 3732721



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 191/238 (80%)
 Strand = Plus / Minus

                                                                           
Query: 89      ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 148
               ||||| |||||||| ||||| || |  |||||||||||||||||||| | ||||||||||
Sbjct: 3733467 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 3733408

                                                                           
Query: 149     tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcg 208
               |||  ||| ||||| ||||| ||  ||||| ||  ||| || | ||||||||||| ||| 
Sbjct: 3733407 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 3733348

                                                                           
Query: 209     gggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggttcgtgccagc 268
               || |||| | ||  ||||   | |||||| ||||| ||||||||||| || |  |||| |
Sbjct: 3733347 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 3733288

                                                                         
Query: 269     gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatct 326
               |||| ||| |||||||||| |||||||||||||||||  |  ||||| ||||||||||
Sbjct: 3733287 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatct 3733230
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>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0050F10
          Length = 151986

 Score =  119 bits (60), Expect = 8e-24
 Identities = 81/88 (92%)
 Strand = Plus / Minus

                                                                         
Query: 325   ctcgagcaggtggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatcca 384
             |||||| |||||||| ||||||||||||||||||| ||| ||||  ||||||||||||||
Sbjct: 77159 ctcgaggaggtggccaaagttgacgacgaaggcgtcggggacggggtcgacgttgatcca 77100

                                         
Query: 385   gtcgcccttgtaggagacctggaggccg 412
             |||||| |||||||||||||||||||||
Sbjct: 77099 gtcgccattgtaggagacctggaggccg 77072



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 191/238 (80%)
 Strand = Plus / Minus

                                                                         
Query: 89    ttgaacgccttctccacgctctccctccgcgcgccgacggtcttgtacacgcgcatgaac 148
             ||||| |||||||| ||||| || |  |||||||||||||||||||| | ||||||||||
Sbjct: 77818 ttgaaggccttctcgacgctgtcgcggcgcgcgccgacggtcttgtagatgcgcatgaac 77759

                                                                         
Query: 149   tcgtcgaaagtgacagtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcg 208
             |||  ||| ||||| ||||| ||  ||||| ||  ||| || | ||||||||||| ||| 
Sbjct: 77758 tcgcggaacgtgacggtgcgatactgcggctggccgccgtctccgacgagctccttcgcc 77699

                                                                         
Query: 209   gggccgatggggatgtccgcggccggcatgatgaaggtcgccaccgaggttcgtgccagc 268
             || |||| | ||  ||||   | |||||| ||||| ||||||||||| || |  |||| |
Sbjct: 77698 ggtccgacgaggcagtccatcggcggcatcatgaacgtcgccaccgacgtcctcgccacc 77639

                                                                       
Query: 269   gccgcgttggtcatcgcccggtgctcgatgctcttcaaaaacccgttggtcgcaatct 326
             |||| ||| |||||||||| |||||||||||||||||  |  ||||| ||||||||||
Sbjct: 77638 gccgagttcgtcatcgccctgtgctcgatgctcttcagcactccgttcgtcgcaatct 77581
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>dbj|AB024058.1| Hordeum vulgare Ids3 mRNA, complete cds
          Length = 1241

 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 146/179 (81%)
 Strand = Plus / Minus

                                                                       
Query: 233 ggcatgatgaaggtcgccaccgaggttcgtgccagcgccgcgttggtcatcgcccggtgc 292
           |||||||| ||||| |||||||| || ||||| ||||| | ||| ||||| || ||||||
Sbjct: 864 ggcatgataaaggtagccaccgatgtgcgtgcaagcgctgagtttgtcattgcacggtgc 805

                                                                       
Query: 293 tcgatgctcttcaaaaacccgttggtcgcaatctcgagcaggtggccgaagttgacgacg 352
           || |||||||| || ||||| || ||| ||| ||||||  | ||||||||||||||||| 
Sbjct: 804 tctatgctctttaacaacccatttgtcacaacctcgagttgttggccgaagttgacgaca 745

                                                                      
Query: 353 aaggcgttgggcacggactcgacgttgatccagtcgcccttgtaggagacctggaggcc 411
           || ||||| ||  | |  || || || |||||||| |||||||||||||||| ||||||
Sbjct: 744 aatgcgttaggtgcagggtcaaccttaatccagtcccccttgtaggagacctcgaggcc 686
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>gb|BT016779.1| Zea mays clone Contig612 mRNA sequence
          Length = 1486

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 145/180 (80%)
 Strand = Plus / Minus

                                                                        
Query: 233  ggcatgatgaaggtcgccaccgaggttcgtgccagcgccgcgttggtcatcgcccggtgc 292
            ||||||||||| || |||||||  || || ||||||| || | |||||| | | ||||||
Sbjct: 1048 ggcatgatgaatgtggccaccgccgtccgcgccagcgtcgagctggtcaccacgcggtgc 989

                                                                        
Query: 293  tcgatgctcttcaaaaacccgttggtcgcaatctcgagcaggtggccgaagttgacgacg 352
            || ||||||||||  || ||||||||| | | ||||||  | ||||||||||||||||||
Sbjct: 988  tcaatgctcttcagcaatccgttggtcaccacctcgagttgctggccgaagttgacgacg 929

                                                                        
Query: 353  aaggcgttgggcacggactcgacgttgatccagtcgcccttgtaggagacctggaggccg 412
            |||||   ||||| || |||||| || ||||| || ||| |||||| ||| | |||||||
Sbjct: 928  aaggcaccgggcatgggctcgacctttatccactctcccctgtaggcgacgtcgaggccg 869
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>gb|AY110844.1| Zea mays CL28103_1 mRNA sequence
          Length = 620

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 144/180 (80%)
 Strand = Plus / Plus

                                                                       
Query: 233 ggcatgatgaaggtcgccaccgaggttcgtgccagcgccgcgttggtcatcgcccggtgc 292
           ||||||||||| || |||||||  || || ||||||| || | |||||| | | ||||||
Sbjct: 341 ggcatgatgaatgtggccaccgccgtccgcgccagcgtcgagctggtcaccacgcggtgc 400

                                                                       
Query: 293 tcgatgctcttcaaaaacccgttggtcgcaatctcgagcaggtggccgaagttgacgacg 352
           || | ||||||||  || ||||||||| | | ||||||  | ||||||||||||||||||
Sbjct: 401 tcaacgctcttcagcaatccgttggtcaccacctcgagttgctggccgaagttgacgacg 460

                                                                       
Query: 353 aaggcgttgggcacggactcgacgttgatccagtcgcccttgtaggagacctggaggccg 412
           |||||   ||||| || |||||| || ||||| || ||| |||||| ||| | |||||||
Sbjct: 461 aaggcaccgggcatgggctcgacctttatccactctcccctgtaggcgacgtcgaggccg 520
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>dbj|D10057.1|BLYIDS2 Hordeum vulgare ids-2 mRNA, complete cds
          Length = 1235

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                               
Query: 164 gtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcggggccga 215
           ||||||||||| ||||||||| |||||| ||||| ||||||||| |||||||
Sbjct: 927 gtgcggtagcgtggcgggttgtcctcgctgacgaactcctccgcagggccga 876
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>dbj|D15051.1|BLYIDS2NK Hordeum vulgare gene for ids2, complete cds
          Length = 3411

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                
Query: 164  gtgcggtagcgcggcgggttgccctcgcagacgagctcctccgcggggccga 215
            ||||||||||| ||||||||| |||||| ||||| ||||||||| |||||||
Sbjct: 2976 gtgcggtagcgtggcgggttgtcctcgctgacgaactcctccgcagggccga 2925



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                        
Query: 336  ggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcgcccttgt 395
            ||||||||||||  || |||| ||| ||||||| || ||| ||||||||| |||||||||
Sbjct: 2684 ggccgaagttgataaccaaggagtttggcacgggctggaccttgatccagccgcccttgt 2625

                            
Query: 396  aggagacctggaggcc 411
            ||| || || ||||||
Sbjct: 2624 aggcgatctcgaggcc 2609
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>dbj|AB024007.1| Hordeum vulgare gene for IDS3, complete cds
          Length = 4904

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcgcccttg 394
            ||||||||||||||||| || ||||| ||  | |  || || ||||||||||| ||||||
Sbjct: 4183 tggccgaagttgacgacaaatgcgttaggtgcagggtcaaccttgatccagtcccccttg 4124

                             
Query: 395  taggagacctggaggcc 411
            |||||||||| ||||||
Sbjct: 4123 taggagacctcgaggcc 4107
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>dbj|D37796.1|BLYIDS3NK Barley gene for Ids3, complete cds
          Length = 3043

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                        
Query: 335  tggccgaagttgacgacgaaggcgttgggcacggactcgacgttgatccagtcgcccttg 394
            ||||||||||||||||| || ||||| ||  | |  || || || |||||||| ||||||
Sbjct: 2478 tggccgaagttgacgacaaatgcgttaggtgcagggtcaaccttaatccagtcccccttg 2419

                             
Query: 395  taggagacctggaggcc 411
            |||||||||| ||||||
Sbjct: 2418 taggagacctcgaggcc 2402
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>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome
          Length = 4607203

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2675771 ccagcgccgcgttggtcatcgc 2675792
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>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome
          Length = 4639675

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2688922 ccagcgccgcgttggtcatcgc 2688943
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>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome
          Length = 4646332

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2689556 ccagcgccgcgttggtcatcgc 2689577
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>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome
          Length = 4599354

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2669358 ccagcgccgcgttggtcatcgc 2669379
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>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome
          Length = 4369232

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2544771 ccagcgccgcgttggtcatcgc 2544792
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>gb|U36841.1|ECU36841 Escherichia coli K-12 genome, approximately 55 minutes
          Length = 15706

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 264  ccagcgccgcgttggtcatcgc 285
            ||||||||||||||||||||||
Sbjct: 2144 ccagcgccgcgttggtcatcgc 2165
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>gb|CP000036.1| Shigella boydii Sb227, complete genome
          Length = 4519823

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2587977 ccagcgccgcgttggtcatcgc 2587998
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>gb|CP000038.1| Shigella sonnei Ss046, complete genome
          Length = 4825265

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 264     ccagcgccgcgttggtcatcgc 285
               ||||||||||||||||||||||
Sbjct: 2794874 ccagcgccgcgttggtcatcgc 2794895
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>emb|AL022726.1|HS625H18 Human DNA sequence from clone RP4-625H18 on chromosome 6p22.2-23
             Contains the ID4 gene for dominant negative
             helix-loop-helix inhibitor of DNA binding 4 protein, a
             novel gene, the 5' end of two novel genes and four CpG
             islands, complete sequence
          Length = 185371

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   acctggaggccgggcacggtg 421
             |||||||||||||||||||||
Sbjct: 64361 acctggaggccgggcacggtg 64341
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>gb|AC131011.5| Homo sapiens X BAC RP13-314C10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 176121

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 401   acctggaggccgggcacggtg 421
             |||||||||||||||||||||
Sbjct: 76112 acctggaggccgggcacggtg 76092
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>gb|AC093132.2| Papio anubis clone RP41-51M7, complete sequence
          Length = 167185

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 401    acctggaggccgggcacggtg 421
              |||||||||||||||||||||
Sbjct: 140319 acctggaggccgggcacggtg 140299
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>gb|AC133208.3| Mus musculus BAC clone RP23-17O6 from chromosome unknown, complete
             sequence
          Length = 239189

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     gaaagtatgcattattatttc 28
             |||||||||||||||||||||
Sbjct: 53303 gaaagtatgcattattatttc 53283
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>emb|BX546504.9| Mouse DNA sequence from clone RP23-78N22 on chromosome X, complete
            sequence
          Length = 107447

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 8    gaaagtatgcattattatttc 28
            |||||||||||||||||||||
Sbjct: 4440 gaaagtatgcattattatttc 4420
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>gb|AC140407.5| Mus musculus BAC clone RP23-142K9 from chromosome unknown, complete
              sequence
          Length = 193404

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 8      gaaagtatgcattattatttc 28
              |||||||||||||||||||||
Sbjct: 193177 gaaagtatgcattattatttc 193157
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>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence
          Length = 188992

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 11    agtatgcattattatttcccagcagcta 38
             |||| |||||||||||| ||||||||||
Sbjct: 47326 agtaagcattattatttgccagcagcta 47299
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>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence
          Length = 178925

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 11    agtatgcattattatttcccagcagcta 38
             |||| |||||||||||| ||||||||||
Sbjct: 24138 agtaagcattattatttgccagcagcta 24111
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>gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p11-q21.1, complete
              sequence
          Length = 190711

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 11     agtatgcattattatttcccagcagcta 38
              |||| |||||||||||| ||||||||||
Sbjct: 110751 agtaagcattattatttgccagcagcta 110778
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>gb|AC104692.1| Homo sapiens BAC clone RP11-208G20 from 7, complete sequence
          Length = 148606

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 11    agtatgcattattatttcccagcagcta 38
             |||| |||||||||||| ||||||||||
Sbjct: 41953 agtaagcattattatttgccagcagcta 41980
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>emb|AL160163.24| Human DNA sequence from clone RP5-973N23 on chromosome 6p12.3-21.2
             Contains the TRFP gene for TRF-proximal protein, the BYSL
             gene for bystin-like protein, the CCDN3 gene for cyclin
             D3, the 5' end of USP49 gene for ubiquitin specific
             protease 49 and 3 CpG islands, complete sequence
          Length = 116506

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cctggaggccgggcacggtg 421
             ||||||||||||||||||||
Sbjct: 62446 cctggaggccgggcacggtg 62465
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>emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001
          Length = 281116

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 11     agtatgcattattatttcccagcagcta 38
              |||| |||||||||||| ||||||||||
Sbjct: 159327 agtaagcattattatttgccagcagcta 159354
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>gb|AC091959.3| Homo sapiens chromosome 5 clone RP11-449H3, complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    cctggaggccgggcacggtg 421
              ||||||||||||||||||||
Sbjct: 124512 cctggaggccgggcacggtg 124493
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>gb|AC093303.2| Homo sapiens chromosome 5 clone RP11-61K20, complete sequence
          Length = 163590

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 47     actgacatccaaatcaaata 66
              ||||||||||||||||||||
Sbjct: 126921 actgacatccaaatcaaata 126940
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>gb|AC098823.3| Homo sapiens BAC clone RP11-420E18 from 2, complete sequence
          Length = 102117

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   cctggaggccgggcacggtg 421
             ||||||||||||||||||||
Sbjct: 55978 cctggaggccgggcacggtg 55997
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>gb|AC091887.3| Homo sapiens chromosome 5 clone RP11-118M9, complete sequence
          Length = 171095

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 402    cctggaggccgggcacggtg 421
              ||||||||||||||||||||
Sbjct: 143023 cctggaggccgggcacggtg 143042
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>emb|BX950204.17| Zebrafish DNA sequence from clone DKEY-252P7 in linkage group 18,
             complete sequence
          Length = 133263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 299   ctcttcaaaaacccgttggt 318
             ||||||||||||||||||||
Sbjct: 89119 ctcttcaaaaacccgttggt 89100
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>emb|AL929156.10| Mouse DNA sequence from clone RP23-475H18 on chromosome 2, complete
              sequence
          Length = 206918

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 388    gcccttgtaggagacctgga 407
              ||||||||||||||||||||
Sbjct: 122975 gcccttgtaggagacctgga 122994
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>gb|AC133180.3| Mus musculus BAC clone RP24-137D2 from chromosome 12, complete sequence
          Length = 123991

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 6     aagaaagtatgcattattatttcc 29
             ||||||| ||||||||||||||||
Sbjct: 90196 aagaaagaatgcattattatttcc 90219
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>gb|AC163040.5| Mus musculus BAC clone RP23-71C23 from chromosome 12, complete sequence
          Length = 235086

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 6     aagaaagtatgcattattatttcc 29
             ||||||| ||||||||||||||||
Sbjct: 42204 aagaaagaatgcattattatttcc 42181


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,584,925
Number of Sequences: 3902068
Number of extensions: 2584925
Number of successful extensions: 66739
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66521
Number of HSP's gapped (non-prelim): 218
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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