Clone Information

BLAST Search Result

Clone Name	rbart32g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	PQQB_KLEPN (P27504) Coenzyme PQQ synthesis protein B (Pyrroloqui...	32	0.46
2	NGFV_VIPLE (P25428) Vemon nerve growth factor precursor (v-NGF)	31	1.0
3	NGF_PRANA (P20675) Beta-nerve growth factor precursor (Beta-NGF)	30	1.8
4	NGF_MOUSE (P01139) Beta-nerve growth factor precursor (Beta-NGF)	30	1.8
5	MUTL_BRUSU (P65490) DNA mismatch repair protein mutL	30	1.8
6	MUTL_BRUME (P65489) DNA mismatch repair protein mutL	30	1.8
7	NGFV_DABRR (P30894) Vemon nerve growth factor (v-NGF)	30	1.8
8	KIN11_ARATH (P92958) SNF1-related protein kinase catalytic alpha...	30	2.3
9	NGF_BOVIN (P13600) Beta-nerve growth factor precursor (Beta-NGF)...	30	2.3
10	PROA_LEGPL (Q5WWN7) Gamma-glutamyl phosphate reductase (GPR) (EC...	30	2.3
11	PROA_LEGPH (Q5ZV33) Gamma-glutamyl phosphate reductase (GPR) (EC...	30	2.3
12	NGF_RAT (P25427) Beta-nerve growth factor precursor (Beta-NGF)	30	2.3
13	YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5	30	3.0
14	FUS1_SCHPO (Q10719) Cell fusion protein fus1	29	3.9
15	POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leade...	29	3.9
16	POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leade...	29	3.9
17	COAT_ABMVW (P21942) Coat protein (CP)	29	3.9
18	BRE_RAT (Q6P7Q1) Protein BRE (Brain and reproductive organ-expre...	29	5.1
19	BRE_MOUSE (Q8K3W0) Protein BRE (Brain and reproductive organ-exp...	29	5.1
20	NGF_XENLA (P21617) Nerve growth factor precursor (NGF)	29	5.1
21	NGF_PIG (Q29074) Beta-nerve growth factor precursor (Beta-NGF) (...	29	5.1
22	M4A8B_HUMAN (Q9BY19) Membrane-spanning 4-domains subfamily A mem...	29	5.1
23	NGF_CHICK (P05200) Beta-nerve growth factor precursor (Beta-NGF)	29	5.1
24	NGF_PANTR (Q9N2F1) Beta-nerve growth factor precursor (Beta-NGF)	29	5.1
25	NGF_HUMAN (P01138) Beta-nerve growth factor precursor (Beta-NGF)	29	5.1
26	BRE_HUMAN (Q9NXR7) Protein BRE (Brain and reproductive organ-exp...	29	5.1
27	RS5_METMA (Q8PV30) 30S ribosomal protein S5P	28	6.7
28	RS5_METAC (Q8TRS7) 30S ribosomal protein S5P	28	6.7
29	CAZA2_MOUSE (P47754) F-actin capping protein alpha-2 subunit (Ca...	28	6.7
30	RS5_METBF (Q46GB5) 30S ribosomal protein S5P	28	6.7
31	NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Si...	28	6.7
32	MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)	28	6.7
33	COAT_CLVK (P03561) Coat protein (CP)	28	6.7
34	P53_RAT (P10361) Cellular tumor antigen p53 (Tumor suppressor p53)	28	6.7
35	COAT_PYMVV (P27255) Coat protein (CP)	28	6.7
36	COAT_TYLCV (P27256) Coat protein (CP)	28	6.7
37	ITA3_DROME (O44386) Integrin alpha-PS3 precursor (Position-speci...	28	8.8
38	CAZA2_PIG (Q29221) F-actin capping protein alpha-2 subunit (CapZ...	28	8.8
39	CAZA2_OTOGA (Q2QLH5) F-actin capping protein alpha-2 subunit (Ca...	28	8.8
40	CAZA2_MICMU (Q2QL88) F-actin capping protein alpha-2 subunit (Ca...	28	8.8
41	CAZA2_HORSE (Q2QLA8) F-actin capping protein alpha-2 subunit (Ca...	28	8.8
42	CAZA2_CARPS (Q2QLD1) F-actin capping protein alpha-2 subunit (Ca...	28	8.8
43	CAZA2_BOVIN (Q5E997) F-actin capping protein alpha-2 subunit (Ca...	28	8.8
44	ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodoma...	28	8.8
45	RS5_HALMA (P26815) 30S ribosomal protein S5P (HmaS5)	28	8.8
46	COAT_CLVN (P14966) Coat protein (CP)	28	8.8
47	GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis pro...	28	8.8

>PQQB_KLEPN (P27504) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone|
           biosynthesis protein B)
          Length = 308

 Score = 32.3 bits (72), Expect = 0.46
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 195 TRLPLPANQACLATWRKSPRPRGCSGPRLVQPVEQRIE---IYLLPALGHPLDHIQHLVP 365
           T +P+ +N    + +R  P P    G  +   +E R     ++  P LG P    + L+P
Sbjct: 157 TAVPIASNAPPYSPYRDRPLP----GHNVALFIENRRNGQTLFYAPGLGEP---DETLLP 209

Query: 366 WVPHGDCLLDHIPVW 410
           W+   DCLL    VW
Sbjct: 210 WLQKADCLLIDGTVW 224

to top

>NGFV_VIPLE (P25428) Vemon nerve growth factor precursor (v-NGF)|
          Length = 244

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ CK+   V   CRG     I AK+WN Y     T  R +T +
Sbjct: 177 FFETKCKNPSPVSSGCRG-----IDAKHWNSYCTTTDTFVRALTME 217

to top

>NGF_PRANA (P20675) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V+  CRG     I +K+WN Y     T  + +T+D
Sbjct: 174 FFETKCRARNPVESGCRG-----IDSKHWNSYCTTTHTFVKALTTD 214

to top

>NGF_MOUSE (P01139) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V+  CRG     I +K+WN Y     T  + +T+D
Sbjct: 174 FFETKCRASNPVESGCRG-----IDSKHWNSYCTTTHTFVKALTTD 214

to top

>MUTL_BRUSU (P65490) DNA mismatch repair protein mutL|
          Length = 623

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 204 PLPANQACLATWRKS-PRPRGCSGPRLVQPVEQRIEIYLLPAL 329
           P PAN    A+WR + P PR    P+   P  + +++   PAL
Sbjct: 358 PRPANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPAL 400

to top

>MUTL_BRUME (P65489) DNA mismatch repair protein mutL|
          Length = 623

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 204 PLPANQACLATWRKS-PRPRGCSGPRLVQPVEQRIEIYLLPAL 329
           P PAN    A+WR + P PR    P+   P  + +++   PAL
Sbjct: 358 PRPANSYSPASWRTAPPAPRSEWSPQTAHPAHRPLDLQAAPAL 400

to top

>NGFV_DABRR (P30894) Vemon nerve growth factor (v-NGF)|
          Length = 117

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ CK+   V   CRG     I AK+WN Y     T  R +T +
Sbjct: 50  FFETKCKNPNPVPSGCRG-----IDAKHWNSYCTTTDTFVRALTME 90

to top

>KIN11_ARATH (P92958) SNF1-related protein kinase catalytic alpha subunit KIN11|
           (EC 2.7.11.1) (AKIN11) (AKIN alpha1)
          Length = 512

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = -3

Query: 401 DMIEKAITMGYPRDQVLNVIQRMTESGQQIDFNALLDRLNESGSG 267
           +++++ + MG+ R+QVL  ++  T++   + +  LLD      SG
Sbjct: 297 EIVQEVVNMGFDRNQVLESLRNRTQNDATVTYYLLLDNRFRVPSG 341

to top

>NGF_BOVIN (P13600) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)|
          Length = 231

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I AK+WN Y     T  + +T D
Sbjct: 164 FFETKCRDPNPVDSGCRG-----IDAKHWNSYCTTTHTFVKALTMD 204

to top

>PROA_LEGPL (Q5WWN7) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 417

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -1

Query: 106 TIPVFSLN--FMCLLAPARALHSQLVFATGL 20
           T+  F++N   +CLL P RAL +QL+ ATGL
Sbjct: 162 TLKNFNINTDIVCLLPPERALMTQLLNATGL 192

to top

>PROA_LEGPH (Q5ZV33) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 417

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 2/31 (6%)
 Frame = -1

Query: 106 TIPVFSLN--FMCLLAPARALHSQLVFATGL 20
           T+  F++N   +CLL P RAL +QL+ ATGL
Sbjct: 162 TLKNFNINTDIVCLLPPERALMTQLLNATGL 192

to top

>NGF_RAT (P25427) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V+  CRG     I +K+WN Y     T  + +T+D
Sbjct: 174 FFETKCRAPNPVESGCRG-----IDSKHWNSYCTTTHTFVKALTTD 214

to top

>YPX5_CAEEL (Q09277) Hypothetical protein F40H6.5|
          Length = 1216

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +3

Query: 174  TTTPPCGTRLPLPANQACLATWRKSPRPRGC 266
            TTTP   T   LP+    +AT   S RPR C
Sbjct: 1003 TTTPKLTTTSTLPSTSTAIATTDVSTRPRSC 1033

to top

>FUS1_SCHPO (Q10719) Cell fusion protein fus1|
          Length = 1372

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = +3

Query: 333  HPLDHI-QHLVPWVPHGDCLLDHI 401
            HP DHI + +VPW+P G  ++D +
Sbjct: 1187 HPDDHICEVMVPWIPSGKSMVDEL 1210

to top

>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 309 IYLLPALGHPLDHIQHLVPWVPHGDCLLDHIP 404
           +Y  P +  PL++++    WVP G  ++D +P
Sbjct: 378 VYAEPEMYPPLEYVRLTESWVPRGRVMIDDLP 409

to top

>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3473

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 309 IYLLPALGHPLDHIQHLVPWVPHGDCLLDHIPVWMA 416
           +Y  P +  PL ++     WVP G  L+D +P  M+
Sbjct: 379 VYAEPEMYPPLGYVHLTESWVPRGRLLIDDLPSLMS 414

to top

>COAT_ABMVW (P21942) Coat protein (CP)|
          Length = 251

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 234 TWRKSPRPRGCSGPRLVQPVEQRIEI 311
           T R +  PRGC GP  VQ  EQR +I
Sbjct: 53  TLRTADVPRGCEGPCKVQSYEQRHDI 78

to top

>BRE_RAT (Q6P7Q1) Protein BRE (Brain and reproductive organ-expressed|
           protein)
          Length = 383

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 306 EIYLLPALGHPLDHIQHL-VPWVPHGDCLLDHIP 404
           ++YL P + H L     L +P  P G CL+D++P
Sbjct: 218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVP 251

to top

>BRE_MOUSE (Q8K3W0) Protein BRE (Brain and reproductive organ-expressed|
           protein)
          Length = 420

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 306 EIYLLPALGHPLDHIQHL-VPWVPHGDCLLDHIP 404
           ++YL P + H L     L +P  P G CL+D++P
Sbjct: 255 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVP 288

to top

>NGF_XENLA (P21617) Nerve growth factor precursor (NGF)|
          Length = 231

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I AK+WN Y     T  + +T +
Sbjct: 166 FFETKCRDPKPVSSGCRG-----IDAKHWNSYCTTTHTFVKALTME 206

to top

>NGF_PIG (Q29074) Beta-nerve growth factor precursor (Beta-NGF) (Fragment)|
          Length = 229

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I +K+WN Y     T  + +T D
Sbjct: 162 FFETKCRDPNPVDSGCRG-----IDSKHWNSYCTTTHTFVKALTMD 202

to top

>M4A8B_HUMAN (Q9BY19) Membrane-spanning 4-domains subfamily A member 8B|
           (Four-span transmembrane protein 4)
          Length = 250

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 280 SFSLSSNALKSICCPLSVILWITFSTWSLGYPMVIAFSIISPYGW 414
           S SL  N + +IC  + VIL+IT     L  P   A+    PY W
Sbjct: 136 SGSLGLNIVSAICSAVGVILFIT----DLSIPHPYAYPDYYPYAW 176

to top

>NGF_CHICK (P05200) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 243

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I AK+WN Y     T  + +T +
Sbjct: 177 FFETKCRDPRPVSSGCRG-----IDAKHWNSYCTTTHTFVKALTME 217

to top

>NGF_PANTR (Q9N2F1) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I +K+WN Y     T  + +T D
Sbjct: 174 FFETKCRDPNPVDSGCRG-----IDSKHWNSYCTTTHTFVKALTMD 214

to top

>NGF_HUMAN (P01138) Beta-nerve growth factor precursor (Beta-NGF)|
          Length = 241

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 14  FRKSSCKHELAVQCTCRGQEAHEIQAKYWNGYMYIVRTISRRITSD 151
           F ++ C+    V   CRG     I +K+WN Y     T  + +T D
Sbjct: 174 FFETKCRDPNPVDSGCRG-----IDSKHWNSYCTTTHTFVKALTMD 214

to top

>BRE_HUMAN (Q9NXR7) Protein BRE (Brain and reproductive organ-expressed|
           protein) (BRCA1/BRCA2-containing complex subunit 45)
          Length = 415

 Score = 28.9 bits (63), Expect = 5.1
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 306 EIYLLPALGHPLDHIQHL-VPWVPHGDCLLDHIP 404
           ++YL P + H L     L +P  P G CL+D++P
Sbjct: 218 KLYLSPRIEHALGGSSALHIPAFPGGGCLIDYVP 251

to top

>RS5_METMA (Q8PV30) 30S ribosomal protein S5P|
          Length = 209

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 362 DQVL--NVIQRMTESGQQIDFNALLDRLNESG 273
           D+VL  N++QRMT+SG+++ F A +   N +G
Sbjct: 50  DEVLDINMVQRMTDSGRRVKFRATVIVGNRNG 81

to top

>RS5_METAC (Q8TRS7) 30S ribosomal protein S5P|
          Length = 209

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 362 DQVL--NVIQRMTESGQQIDFNALLDRLNESG 273
           D+VL  N++QRMT+SG+++ F A +   N +G
Sbjct: 50  DEVLDINMVQRMTDSGRRVKFRATVIVGNRNG 81

to top

>CAZA2_MOUSE (P47754) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ VD    I+
Sbjct: 111 EAENAIESWRTSVETALRAYVKEHYPNG--VCTVYGKKVDGQQTII 154

to top

>RS5_METBF (Q46GB5) 30S ribosomal protein S5P|
          Length = 208

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 362 DQVL--NVIQRMTESGQQIDFNALLDRLNESG 273
           D+VL  N++QRMT+SG+++ F A +   N +G
Sbjct: 50  DEVLDINMVQRMTDSGRRVKFRATVIVGNRNG 81

to top

>NCOR2_MOUSE (Q9WU42) Nuclear receptor corepressor 2 (N-CoR2) (Silencing|
           mediator of retinoic acid and thyroid hormone receptor)
           (SMRT) (SMRTe) (Thyroid-,
           retinoic-acid-receptor-associated corepressor) (T3
           receptor-associating factor) (TRAC)
          Length = 2472

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +3

Query: 213 ANQACLATWRKS-PR--PRGCSGPRLVQPVEQRIEIYLLPALGHPLDHIQHLVP 365
           + Q    TWR + PR  P G S P  VQ      ++ LL    HP D+  HL P
Sbjct: 4   STQPVAQTWRAAEPRYPPHGISYP--VQIARSHTDVGLLEYQHHPRDYTSHLSP 55

to top

>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)|
          Length = 1125

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = +2

Query: 182 TTLWHTASTSSEPG------LPRDLEEITTPEGVLRTQTR 283
           T + H+ ST + PG      L +D+EEIT P+ +L   T+
Sbjct: 249 TDVVHSPSTDTTPGPDTEAALAKDIEEITKPDVILANVTQ 288

to top

>COAT_CLVK (P03561) Coat protein (CP)|
          Length = 258

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/49 (28%), Positives = 20/49 (40%)
 Frame = +3

Query: 165 IWITTTPPCGTRLPLPANQACLATWRKSPRPRGCSGPRLVQPVEQRIEI 311
           + +T         P+         +R    PRGC GP  VQ  EQR ++
Sbjct: 36  VHVTNRKRAWVNRPMYRKPTMYRMYRSPDIPRGCEGPCKVQSFEQRDDV 84

to top

>P53_RAT (P10361) Cellular tumor antigen p53 (Tumor suppressor p53)|
          Length = 391

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +3

Query: 165 IWITTTPPCGTRLPLPA----NQACLATWRKSPRPRGCSGPRLVQPVEQRIEI 311
           +W+T+TPP GTR+   A    +Q      R+ P    CS    + P +  I +
Sbjct: 143 LWVTSTPPPGTRVRAMAIYKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRV 195

to top

>COAT_PYMVV (P27255) Coat protein (CP)|
          Length = 251

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = +3

Query: 234 TWRKSPRPRGCSGPRLVQPVEQRIEI 311
           T R    PRGC GP  VQ  EQR +I
Sbjct: 53  TLRTPDVPRGCEGPCKVQSFEQRHDI 78

to top

>COAT_TYLCV (P27256) Coat protein (CP)|
          Length = 260

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 237 WRKSPRPRGCSGPRLVQPVEQRIEI 311
           +R    PRGC GP  VQ  EQR +I
Sbjct: 60  YRSPDVPRGCEGPCKVQSYEQRDDI 84

to top

>ITA3_DROME (O44386) Integrin alpha-PS3 precursor (Position-specific antigen 3|
           alpha chain) (Protein scab) (Protein volado)
          Length = 1115

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 11/54 (20%)
 Frame = +2

Query: 98  WNGYMYIVR--------TISRRITSDLI---YLDLDNNDTTLWHTASTSSEPGL 226
           W G + + R        T SRR TS  +   Y D+D+ND T  H A     PGL
Sbjct: 230 WRGSVILYRQVDPVDNPTASRRDTSKALRRTYRDVDSNDYTPEHYAPEIPTPGL 283

to top

>CAZA2_PIG (Q29221) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAVESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>CAZA2_OTOGA (Q2QLH5) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAVESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>CAZA2_MICMU (Q2QL88) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAIESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>CAZA2_HORSE (Q2QLA8) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAVESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>CAZA2_CARPS (Q2QLD1) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAIESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>CAZA2_BOVIN (Q5E997) F-actin capping protein alpha-2 subunit (CapZ alpha-2)|
          Length = 285

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 18  ESPVANTSWLCSARAGARRHMKFKLNTGMVICTLYGQSVDASHQIL 155
           E+  A  SW  S     R ++K     G  +CT+YG+ +D    I+
Sbjct: 111 EAENAIESWRTSVETALRAYVKEHYPNG--VCTVYGKKIDGQQTII 154

to top

>ZFH1_DROME (P28166) Zinc finger protein 1 (Zinc finger homeodomain protein 1)|
          Length = 1054

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +1

Query: 226 ASRPGGNHHARGGAPDPDSFSLSSNALKSICCPLSV 333
           A+ P     +R  +PDP+S+  SS A+K    PL+V
Sbjct: 573 AATPIKREESREASPDPESYRSSSQAIKQEQEPLNV 608

to top

>RS5_HALMA (P26815) 30S ribosomal protein S5P (HmaS5)|
          Length = 212

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 16/59 (27%)
 Frame = -3

Query: 401 DMIEKAITMGYP--------------RDQVL--NVIQRMTESGQQIDFNALLDRLNESG 273
           D +++A+  G P               D+VL  N++QRMT+SG+++ F  ++   N  G
Sbjct: 23  DSMQEALNSGLPLKESEVVDQLVPDLEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDG 81

to top

>COAT_CLVN (P14966) Coat protein (CP)|
          Length = 258

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 237 WRKSPRPRGCSGPRLVQPVEQRIEI 311
           +R    PRGC GP  VQ  EQR ++
Sbjct: 60  YRSPDIPRGCEGPCKVQSFEQRDDV 84

to top

>GCNL2_MOUSE (Q9JHD2) General control of amino acid synthesis protein 5-like 2|
           (EC 2.3.1.48) (Histone acetyltransferase GCN5) (mmGCN5)
          Length = 830

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 213 ANQACLATWRKSPRPRGCSGPRLVQPVEQRIEIYLLPALGHPL-DHIQHL 359
           AN+ C     K+P+P       L QP     E  L  +  HPL DH+ HL
Sbjct: 109 ANETCKCNGWKNPKPPTAPRMDLQQPAANLSE--LCRSCEHPLADHVSHL 156


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,797,697
Number of Sequences: 219361
Number of extensions: 1530652
Number of successful extensions: 5243
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 4999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5241
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result