Clone Name | rbart32g02 |
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Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Plus Query: 242 gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301 ||||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | Sbjct: 31645132 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 31645191 Query: 302 cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361 |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| | Sbjct: 31645192 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 31645251 Query: 362 cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421 |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| |||| Sbjct: 31645252 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 31645311 Query: 422 tca 424 ||| Sbjct: 31645312 tca 31645314
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503C12 Length = 147180 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Plus Query: 242 gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301 ||||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | Sbjct: 58864 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 58923 Query: 302 cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361 |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| | Sbjct: 58924 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 58983 Query: 362 cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421 |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| |||| Sbjct: 58984 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 59043 Query: 422 tca 424 ||| Sbjct: 59044 tca 59046
>dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full insert sequence Length = 2604 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 242 gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301 ||||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | Sbjct: 1933 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1874 Query: 302 cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361 |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| | Sbjct: 1873 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 1814 Query: 362 cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421 |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| |||| Sbjct: 1813 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 1754 Query: 422 tca 424 ||| Sbjct: 1753 tca 1751
>dbj|AK073811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K05, full insert sequence Length = 2128 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 242 gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301 ||||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | Sbjct: 1870 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1811 Query: 302 cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361 |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| | Sbjct: 1810 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 1751 Query: 362 cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421 |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| |||| Sbjct: 1750 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 1691 Query: 422 tca 424 ||| Sbjct: 1690 tca 1688
>dbj|AK060895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C09, full insert sequence Length = 1329 Score = 157 bits (79), Expect = 4e-35 Identities = 157/183 (85%) Strand = Plus / Minus Query: 242 gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301 ||||||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | Sbjct: 1071 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1012 Query: 302 cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361 |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| | Sbjct: 1011 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 952 Query: 362 cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421 |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| |||| Sbjct: 951 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 892 Query: 422 tca 424 ||| Sbjct: 891 tca 889
>ref|NM_191271.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1788 Score = 149 bits (75), Expect = 9e-33 Identities = 153/179 (85%) Strand = Plus / Minus Query: 246 tcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacgcatt 305 ||||||||| |||||||||||||||||||| | ||||||| || ||| ||||| | || Sbjct: 1788 tcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatgtgtt 1729 Query: 306 gaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggtccct 365 |||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| ||||| Sbjct: 1728 gaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgctccct 1669 Query: 366 tgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgcatca 424 || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||||| Sbjct: 1668 gggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgcatca 1610
>emb|AL844196.6| Zebrafish DNA sequence from clone CH211-2A23, complete sequence Length = 171141 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 147 cagatcttatttatttagattt 168 |||||||||||||||||||||| Sbjct: 60206 cagatcttatttatttagattt 60227
>gb|CP000114.1| Streptococcus agalactiae A909, complete genome Length = 2127839 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tatttatttagatttggataa 174 ||||||||||||||||||||| Sbjct: 1082228 tatttatttagatttggataa 1082248
>emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chromosome 1 Contains part of the LPHN2 gene for latrophilin 2, complete sequence Length = 60193 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 86 caagctaaatactggaatggt 106 ||||||||||||||||||||| Sbjct: 24350 caagctaaatactggaatggt 24330
>gb|AE014238.1| Streptococcus agalactiae 2603V/R section 48 of 100 of the complete genome Length = 21317 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tatttatttagatttggataa 174 ||||||||||||||||||||| Sbjct: 10140 tatttatttagatttggataa 10160
>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6 Length = 233050 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 154 tatttatttagatttggataa 174 ||||||||||||||||||||| Sbjct: 141831 tatttatttagatttggataa 141851
>emb|BX255946.6| Mouse DNA sequence from clone RP23-82A14 on chromosome 4, complete sequence Length = 116194 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 368 ggtaccccatggtgattgccttctcgatc 396 |||||||||||||||| ||||||| |||| Sbjct: 107316 ggtaccccatggtgatagccttcttgatc 107288
>gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 165821 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 150 atcttatttatttagatttggata 173 |||||||||| ||||||||||||| Sbjct: 55122 atcttatttagttagatttggata 55099
>ref|XM_364618.1| Magnaporthe grisea 70-15 hypothetical protein (MG09463.4) partial mRNA Length = 1416 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 tcacattcagcacctggtcc 363 |||||||||||||||||||| Sbjct: 1146 tcacattcagcacctggtcc 1165
>gb|AC136965.2| Canis familiaris clone RP81-213K20, complete sequence Length = 157884 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 gatcttatttatttagattt 168 |||||||||||||||||||| Sbjct: 61561 gatcttatttatttagattt 61542
>emb|CR354371.11| Zebrafish DNA sequence from clone CH211-267G13 in linkage group 23, complete sequence Length = 86446 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaataatttgctttagaaag 22 |||||||||||||||||||| Sbjct: 80222 aaataatttgctttagaaag 80241
>emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chromosome 9q13-21.2 Contains a novel gene and the ALDH1A1 gene for aldehyde dehydrogenase 1 family member A1, complete sequence Length = 136895 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 77 catgaaattcaagctaaatactgg 100 ||||||||| |||||||||||||| Sbjct: 114020 catgaaatttaagctaaatactgg 114043
>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete sequence Length = 101846 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 atcttatttatttagatttggata 173 |||||||||||||| ||||||||| Sbjct: 2959 atcttatttatttaaatttggata 2982
>emb|AL161792.29| Human DNA sequence from clone RP11-84P7 on chromosome 9 Contains a high-mobility group box pseudogene, two novel gene and the 3' end of the RNF38 gene for ring finger protein 38, complete sequence Length = 77027 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 catcagatcttatttattta 163 |||||||||||||||||||| Sbjct: 6263 catcagatcttatttattta 6282
>emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on chromosome 9 Contains the 5' end of the ENG gene for endoglin (Osler-Rendu-Weber syndrome 1) (END, ORW, HHT1, ORW1, CD105), the AK1 gene for adenylate kinase 1, the ST6GALNAC6 gene for CMP-NeuAC:(beta)-N-acetylgalactosaminide (alpha)2,6-sialyltransferase member VI (ST6GALNACVI), the SIAT7D gene for sialyltransferase 7D ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1, 3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase) (SIAT3C, ST6GALNAC4, ST6GALNACIV), the DPM2 gene for dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit (MGC21559), the gene for a novel protien containing FLJ00179, a novel gene and ten CpG islands, complete sequence Length = 164201 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 catcagatcttatttattta 163 |||||||||||||||||||| Sbjct: 36853 catcagatcttatttattta 36834
>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence Length = 181253 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 atttgctttagaaagtccagttgc 31 ||||||||||||| |||||||||| Sbjct: 178320 atttgctttagaacgtccagttgc 178297
>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete sequence Length = 197430 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 atcttatttatttagatttggata 173 |||||||||||||| ||||||||| Sbjct: 17244 atcttatttatttaaatttggata 17267
>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete sequence Length = 168190 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 150 atcttatttatttagatttggata 173 |||||||||||||| ||||||||| Sbjct: 89466 atcttatttatttaaatttggata 89489
>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence Length = 189411 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 atttgctttagaaagtccagttgc 31 ||||||||||||| |||||||||| Sbjct: 66847 atttgctttagaacgtccagttgc 66824
>dbj|AK035881.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630013H16 product:unclassifiable, full insert sequence Length = 1720 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ctgtgcagtgcacgtgcagg 64 |||||||||||||||||||| Sbjct: 580 ctgtgcagtgcacgtgcagg 561
>emb|AL929068.20| Mouse DNA sequence from clone RP23-9N11 on chromosome 2, complete sequence Length = 131152 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 cttatttatttagatttgga 171 |||||||||||||||||||| Sbjct: 107058 cttatttatttagatttgga 107077
>emb|AL606930.13| Mouse DNA sequence from clone RP23-131D5 on chromosome 4, complete sequence Length = 133741 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 ctgtgcagtgcacgtgcagg 64 |||||||||||||||||||| Sbjct: 110449 ctgtgcagtgcacgtgcagg 110430 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,454,653 Number of Sequences: 3902068 Number of extensions: 4454653 Number of successful extensions: 67624 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67558 Number of HSP's gapped (non-prelim): 66 length of query: 424 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 402 effective length of database: 17,147,199,772 effective search space: 6893174308344 effective search space used: 6893174308344 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)