ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32g02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
2dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic D... 157 4e-35
3dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
4dbj|AK073811.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
5dbj|AK060895.1| Oryza sativa (japonica cultivar-group) cDNA clon... 157 4e-35
6ref|NM_191271.1| Oryza sativa (japonica cultivar-group), predic... 149 9e-33
7emb|AL844196.6| Zebrafish DNA sequence from clone CH211-2A23, co... 44 0.36
8gb|CP000114.1| Streptococcus agalactiae A909, complete genome 42 1.4
9emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chr... 42 1.4
10gb|AE014238.1| Streptococcus agalactiae 2603V/R section 48 of 10... 42 1.4
11emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complet... 42 1.4
12emb|BX255946.6| Mouse DNA sequence from clone RP23-82A14 on chro... 42 1.4
13gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Canc... 40 5.7
14ref|XM_364618.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 5.7
15gb|AC136965.2| Canis familiaris clone RP81-213K20, complete sequ... 40 5.7
16emb|CR354371.11| Zebrafish DNA sequence from clone CH211-267G13 ... 40 5.7
17emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chr... 40 5.7
18emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on ch... 40 5.7
19emb|AL161792.29| Human DNA sequence from clone RP11-84P7 on chro... 40 5.7
20emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on ch... 40 5.7
21gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 5.7
22gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromo... 40 5.7
23gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chrom... 40 5.7
24gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, comp... 40 5.7
25dbj|AK035881.1| Mus musculus 16 days neonate cerebellum cDNA, RI... 40 5.7
26emb|AL929068.20| Mouse DNA sequence from clone RP23-9N11 on chro... 40 5.7
27emb|AL606930.13| Mouse DNA sequence from clone RP23-131D5 on chr... 40 5.7

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Plus

                                                                            
Query: 242      gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301
                ||||||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |
Sbjct: 31645132 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 31645191

                                                                            
Query: 302      cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361
                  |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
Sbjct: 31645192 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 31645251

                                                                            
Query: 362      cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421
                |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct: 31645252 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 31645311

                   
Query: 422      tca 424
                |||
Sbjct: 31645312 tca 31645314



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>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0503C12
          Length = 147180

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Plus

                                                                         
Query: 242   gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301
             ||||||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |
Sbjct: 58864 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 58923

                                                                         
Query: 302   cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361
               |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
Sbjct: 58924 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 58983

                                                                         
Query: 362   cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421
             |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct: 58984 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 59043

                
Query: 422   tca 424
             |||
Sbjct: 59044 tca 59046



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>dbj|AK106976.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full
            insert sequence
          Length = 2604

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301
            ||||||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |
Sbjct: 1933 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1874

                                                                        
Query: 302  cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361
              |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
Sbjct: 1873 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 1814

                                                                        
Query: 362  cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421
            |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct: 1813 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 1754

               
Query: 422  tca 424
            |||
Sbjct: 1753 tca 1751



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>dbj|AK073811.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033066K05, full
            insert sequence
          Length = 2128

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301
            ||||||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |
Sbjct: 1870 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1811

                                                                        
Query: 302  cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361
              |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
Sbjct: 1810 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 1751

                                                                        
Query: 362  cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421
            |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct: 1750 ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 1691

               
Query: 422  tca 424
            |||
Sbjct: 1690 tca 1688



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>dbj|AK060895.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-C09, full
            insert sequence
          Length = 1329

 Score =  157 bits (79), Expect = 4e-35
 Identities = 157/183 (85%)
 Strand = Plus / Minus

                                                                        
Query: 242  gaaatcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacg 301
            ||||||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |
Sbjct: 1071 gaaatcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatg 1012

                                                                        
Query: 302  cattgaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggt 361
              |||||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |
Sbjct: 1011 tgttgaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgct 952

                                                                        
Query: 362  cccttgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgca 421
            |||| || || |||||||||||||||||||| ||||| ||||| || |||||||| ||||
Sbjct: 951  ccctgggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgca 892

               
Query: 422  tca 424
            |||
Sbjct: 891  tca 889



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>ref|NM_191271.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1788

 Score =  149 bits (75), Expect = 9e-33
 Identities = 153/179 (85%)
 Strand = Plus / Minus

                                                                        
Query: 246  tcaccacgcccgagggggtgctccggacccagactcgttcagcctgtcgagcaacgcatt 305
            ||||||||| |||||||||||||||||||| |  ||||||| || ||| ||||| |  ||
Sbjct: 1788 tcaccacgcacgagggggtgctccggaccctgcttcgttcaaccggtccagcaatgtgtt 1729

                                                                        
Query: 306  gaaatctatctgctgcccgctctcggtcatcctctggatcacattcagcacctggtccct 365
            |||||| ||| |||| || ||||||||||||||||| || ||||||| |||||| |||||
Sbjct: 1728 gaaatccatcggctggccactctcggtcatcctctgaataacattcatcacctgctccct 1669

                                                                       
Query: 366  tgggtaccccatggtgattgccttctcgatcatatccccgtatggatggccccgcatca 424
             || || |||||||||||||||||||| ||||| ||||| || |||||||| |||||||
Sbjct: 1668 gggatatcccatggtgattgccttctcaatcatttccccataaggatggccgcgcatca 1610



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>emb|AL844196.6| Zebrafish DNA sequence from clone CH211-2A23, complete sequence
          Length = 171141

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 147   cagatcttatttatttagattt 168
             ||||||||||||||||||||||
Sbjct: 60206 cagatcttatttatttagattt 60227



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>gb|CP000114.1| Streptococcus agalactiae A909, complete genome
          Length = 2127839

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 154     tatttatttagatttggataa 174
               |||||||||||||||||||||
Sbjct: 1082228 tatttatttagatttggataa 1082248



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>emb|AL359705.10| Human DNA sequence from clone RP11-211B4 on chromosome 1 Contains part
             of the LPHN2 gene for latrophilin 2, complete sequence
          Length = 60193

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    caagctaaatactggaatggt 106
             |||||||||||||||||||||
Sbjct: 24350 caagctaaatactggaatggt 24330



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>gb|AE014238.1| Streptococcus agalactiae 2603V/R section 48 of 100 of the complete
             genome
          Length = 21317

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 154   tatttatttagatttggataa 174
             |||||||||||||||||||||
Sbjct: 10140 tatttatttagatttggataa 10160



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>emb|AL766848.1|SAG766848 Streptococcus agalactiae NEM316 complete genome, segment 6
          Length = 233050

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 154    tatttatttagatttggataa 174
              |||||||||||||||||||||
Sbjct: 141831 tatttatttagatttggataa 141851



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>emb|BX255946.6| Mouse DNA sequence from clone RP23-82A14 on chromosome 4, complete
              sequence
          Length = 116194

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 368    ggtaccccatggtgattgccttctcgatc 396
              |||||||||||||||| ||||||| ||||
Sbjct: 107316 ggtaccccatggtgatagccttcttgatc 107288



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>gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 165821

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 150   atcttatttatttagatttggata 173
             |||||||||| |||||||||||||
Sbjct: 55122 atcttatttagttagatttggata 55099



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>ref|XM_364618.1| Magnaporthe grisea 70-15 hypothetical protein (MG09463.4) partial
            mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 344  tcacattcagcacctggtcc 363
            ||||||||||||||||||||
Sbjct: 1146 tcacattcagcacctggtcc 1165



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>gb|AC136965.2| Canis familiaris clone RP81-213K20, complete sequence
          Length = 157884

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 149   gatcttatttatttagattt 168
             ||||||||||||||||||||
Sbjct: 61561 gatcttatttatttagattt 61542



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>emb|CR354371.11| Zebrafish DNA sequence from clone CH211-267G13 in linkage group 23,
             complete sequence
          Length = 86446

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     aaataatttgctttagaaag 22
             ||||||||||||||||||||
Sbjct: 80222 aaataatttgctttagaaag 80241



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>emb|AL591031.3| Human DNA sequence from clone RP11-151D14 on chromosome 9q13-21.2
              Contains a novel gene and the ALDH1A1 gene for aldehyde
              dehydrogenase 1 family member A1, complete sequence
          Length = 136895

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 77     catgaaattcaagctaaatactgg 100
              ||||||||| ||||||||||||||
Sbjct: 114020 catgaaatttaagctaaatactgg 114043



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>emb|AL450324.10| Human DNA sequence from clone RP11-307F22 on chromosome 6, complete
            sequence
          Length = 101846

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 150  atcttatttatttagatttggata 173
            |||||||||||||| |||||||||
Sbjct: 2959 atcttatttatttaaatttggata 2982



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>emb|AL161792.29| Human DNA sequence from clone RP11-84P7 on chromosome 9 Contains a
            high-mobility group box pseudogene, two  novel gene and
            the 3' end of the RNF38 gene for ring finger protein 38,
            complete sequence
          Length = 77027

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 144  catcagatcttatttattta 163
            ||||||||||||||||||||
Sbjct: 6263 catcagatcttatttattta 6282



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>emb|AL157935.28| Human DNA sequence from clone RP11-203J24 on chromosome 9 Contains the
             5' end of the ENG gene for endoglin (Osler-Rendu-Weber
             syndrome 1) (END, ORW, HHT1, ORW1, CD105), the AK1 gene
             for adenylate kinase 1, the ST6GALNAC6 gene for
             CMP-NeuAC:(beta)-N-acetylgalactosaminide
             (alpha)2,6-sialyltransferase member VI (ST6GALNACVI), the
             SIAT7D gene for sialyltransferase 7D
             ((alpha-N-acetylneuraminyl-2,3-beta-galactosyl-1,
             3)-N-acetyl galactosaminide alpha-2,6-sialyltransferase)
             (SIAT3C, ST6GALNAC4, ST6GALNACIV), the DPM2 gene for
             dolichyl-phosphate mannosyltransferase polypeptide 2,
             regulatory subunit (MGC21559), the gene for a novel
             protien containing FLJ00179, a novel gene and ten CpG
             islands, complete sequence
          Length = 164201

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   catcagatcttatttattta 163
             ||||||||||||||||||||
Sbjct: 36853 catcagatcttatttattta 36834



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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 8      atttgctttagaaagtccagttgc 31
              ||||||||||||| ||||||||||
Sbjct: 178320 atttgctttagaacgtccagttgc 178297



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>gb|AC182636.3| Pan troglodytes BAC clone CH251-519F5 from chromosome 6, complete
             sequence
          Length = 197430

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   atcttatttatttagatttggata 173
             |||||||||||||| |||||||||
Sbjct: 17244 atcttatttatttaaatttggata 17267



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>gb|AC182427.3| Pan troglodytes BAC clone CH251-692F19 from chromosome 6, complete
             sequence
          Length = 168190

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 150   atcttatttatttagatttggata 173
             |||||||||||||| |||||||||
Sbjct: 89466 atcttatttatttaaatttggata 89489



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>gb|AC096542.2| Homo sapiens chromosome 1 clone RP11-332L18, complete sequence
          Length = 189411

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 8     atttgctttagaaagtccagttgc 31
             ||||||||||||| ||||||||||
Sbjct: 66847 atttgctttagaacgtccagttgc 66824



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>dbj|AK035881.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:9630013H16
           product:unclassifiable, full insert sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 45  ctgtgcagtgcacgtgcagg 64
           ||||||||||||||||||||
Sbjct: 580 ctgtgcagtgcacgtgcagg 561



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>emb|AL929068.20| Mouse DNA sequence from clone RP23-9N11 on chromosome 2, complete
              sequence
          Length = 131152

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    cttatttatttagatttgga 171
              ||||||||||||||||||||
Sbjct: 107058 cttatttatttagatttgga 107077



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>emb|AL606930.13| Mouse DNA sequence from clone RP23-131D5 on chromosome 4, complete
              sequence
          Length = 133741

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 45     ctgtgcagtgcacgtgcagg 64
              ||||||||||||||||||||
Sbjct: 110449 ctgtgcagtgcacgtgcagg 110430


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,454,653
Number of Sequences: 3902068
Number of extensions: 4454653
Number of successful extensions: 67624
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67558
Number of HSP's gapped (non-prelim): 66
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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