ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (E... 57 4e-08
2GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC ... 41 0.002
3OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-li... 31 1.8
4CRF1_YARLI (P45815) Copper resistance protein CRF1 31 2.4
5Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71) 29 9.0

>GSTU6_ORYSA (Q06398) Probable glutathione S-transferase GSTU6 (EC 2.5.1.18) (28|
           kDa cold-induced protein)
          Length = 236

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
 Frame = -3

Query: 522 CSKGEGYFGGETXXXXXXXXXXXXXXLNATEVMSGTKIFDPVKTPLLAAWMDRFSELDAA 343
           CSKG+ +FGG+                 A + + G ++ DP +TP LAAW +RF   DAA
Sbjct: 150 CSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAA 209

Query: 342 KAALP-EVDRVVEF 304
           K  +P + D+++EF
Sbjct: 210 KGVVPDDADKLLEF 223



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>GSTX2_MAIZE (P50472) Probable glutathione S-transferase BZ2 (EC 2.5.1.18)|
           (Protein bronze-2)
          Length = 236

 Score = 41.2 bits (95), Expect = 0.002
 Identities = 19/45 (42%), Positives = 26/45 (57%)
 Frame = -3

Query: 438 ATEVMSGTKIFDPVKTPLLAAWMDRFSELDAAKAALPEVDRVVEF 304
           A E + G  + D   TPLL  W  RF+   AAK  LP+ ++VV+F
Sbjct: 177 ACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221



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>OL287_RAT (P23267) Olfactory receptor 287 (Olfactory receptor-like protein|
           F6)
          Length = 311

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
 Frame = +1

Query: 115 VQFYTRTSTKSKQIFWDRGNIIN*SLFERNMHFSYSMGLTFL*YLLVVRSNNSGSSLCLP 294
           + F T    K+   F  RG +I+ +     M+F +S+G T   +LL V + +   ++CLP
Sbjct: 74  IWFTTACVPKTLATFAPRGGVISLAGCATQMYFVFSLGCTEY-FLLAVMAYDRYLAICLP 132

Query: 295 L-HGKFDHP-------INLWQRRLRSIELAKAIHPCRQERSLNRIKDLGSR---HHFCSV 441
           L +G    P       +  W     +I +   +        + R+   GSR   H FC +
Sbjct: 133 LRYGGIMTPGLAMRLALGSWLCGFSAITVPATL--------IARLSFCGSRVINHFFCDI 184

Query: 442 QP 447
            P
Sbjct: 185 SP 186



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>CRF1_YARLI (P45815) Copper resistance protein CRF1|
          Length = 411

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPPRAES 395
           QQ Q   P  +  +  P  P+ATP   HRA  + PS+ P+ +S
Sbjct: 146 QQPQMPTPVHTTNVTTP--PVATPTHSHRALSTTPSLSPQPQS 186



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>Y066_NPVOP (Q83949) Hypothetical 98.6 kDa protein (ORF71)|
          Length = 875

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 15/40 (37%), Positives = 17/40 (42%)
 Frame = +3

Query: 267 QQRQQLVPASSWQIRPPYQPLATPPSQHRAR*SDPSMPPR 386
           QQ  Q  P    Q +PP QP   PP Q       P  PP+
Sbjct: 101 QQPPQPPPDQPQQPQPPQQPPQQPPQQQPQPPQPPQQPPQ 140


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,406,643
Number of Sequences: 219361
Number of extensions: 1247626
Number of successful extensions: 3008
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3003
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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