ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32f11 |
|---|---|
| Clone Library Name | barley_pub |
>CPK15_ARATH (P92937) CBL-interacting serine/threonine-protein kinase 15 (EC| 2.7.11.1) (Serine/threonine-protein kinase ATPK10) (SOS2-like protein kinase PKS3) (SOS-interacting protein 2) (SNF1-related kinase 3.1) Length = 421 Score = 48.9 bits (115), Expect = 8e-06 Identities = 24/63 (38%), Positives = 33/63 (52%) Frame = -1 Query: 513 WRIRMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIV 334 WR++M A+A V AEVFE+A +V GGD ++ + E +RP L D V Sbjct: 364 WRVKMSAEAT------VVEAEVFEIAPSYHMVVLKKSGGDTAEYKRVMKESIRPALIDFV 417 Query: 333 WAW 325 AW Sbjct: 418 LAW 420
>CIPK1_ORYSA (Q6X4A2) CIPK-like protein 1 (EC 2.7.11.1) (OsCK1)| Length = 449 Score = 48.1 bits (113), Expect = 1e-05 Identities = 27/67 (40%), Positives = 36/67 (53%) Frame = -1 Query: 513 WRIRMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIV 334 +++RME G G L V EVF+VA + VVE GD L+F KF + L D+V Sbjct: 377 YKMRMENLKAGRKGNLNVATEVFQVAPSLHVVELKKAKGDTLEFQKF-YRTLSTQLKDVV 435 Query: 333 WAWQGDV 313 W G+V Sbjct: 436 WKCDGEV 442
>CPK24_ARATH (Q9LDI3) CBL-interacting serine/threonine-protein kinase 24 (EC| 2.7.11.1) (SNF1-related kinase 3.11) (SALT OVERLY SENSITIVE 2 protein) Length = 446 Score = 36.2 bits (82), Expect = 0.054 Identities = 19/68 (27%), Positives = 38/68 (55%) Frame = -1 Query: 513 WRIRMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIV 334 ++ R+E + G+LAV E++EVA + +V+ G+ L+++KF + + L +I+ Sbjct: 370 FKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHKF-YKKLCSKLENII 428 Query: 333 WAWQGDVP 310 W +P Sbjct: 429 WRATEGIP 436
>ATX2L_MOUSE (Q7TQH0) Ataxin-2-like protein| Length = 1049 Score = 31.6 bits (70), Expect = 1.3 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 11/60 (18%) Frame = +2 Query: 254 AQRTPGGTA*DHATAPG-----------KAGTSPCHAHTMSASPGRTSSAQNLLKSSASP 400 A+R+PGGT+ + PG A SPC +A G A+++L +SA P Sbjct: 24 ARRSPGGTSPPNGGLPGPLTATAAPPGPPAAVSPCLGPAAAAGSGLRRGAESILAASAPP 83
>CIPK1_ARATH (Q8RWC9) CBL-interacting serine/threonine-protein kinase 1 (EC| 2.7.11.1) (SOS2-like protein kinase PKS13) (SNF1-related kinase 3.16) Length = 444 Score = 30.8 bits (68), Expect = 2.3 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -1 Query: 510 RIRMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDA 391 R++ E + L+VTAEVFE+ + VVE GD+ Sbjct: 380 RVKQEERNQKGQVGLSVTAEVFEIKPSLNVVELRKSYGDS 419
>CCD16_BRARE (Q6P0I6) Coiled-coil domain-containing protein 16| Length = 326 Score = 30.4 bits (67), Expect = 3.0 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 4/37 (10%) Frame = +2 Query: 305 KAGTSPCH----AHTMSASPGRTSSAQNLLKSSASPP 403 K+ T+P H AHT + +P SS+ + LK +A PP Sbjct: 80 KSRTAPAHTPAPAHTPAHTPAAASSSSSTLKRAAEPP 116
>BISC_ECOLI (P20099) Biotin sulfoxide reductase (EC 1.-.-.-) (BDS reductase)| (BSO reductase) Length = 777 Score = 30.0 bits (66), Expect = 3.9 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -1 Query: 342 DIVWAWQGDVPALPGAVA*SQAVPPGVLCAYKRRWSKLVILCRIIC 205 D V W L GAV S+ + PGV+C ++ W L + IC Sbjct: 684 DTVRLWNARGQILAGAVI-SEGIKPGVICIHEGAWPDLDLTADGIC 728
>ITA2B_MOUSE (Q9QUM0) Integrin alpha-IIb precursor (Platelet membrane| glycoprotein IIb) (GPalpha IIb) (GPIIb) (CD41 antigen) [Contains: Integrin alpha-IIb heavy chain; Integrin alpha-IIb light chain] Length = 1033 Score = 29.3 bits (64), Expect = 6.6 Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%) Frame = +2 Query: 230 NLLHLRLYAQRTP-GGTA*DHATAPGKAGTSPCHAHTMSA 346 N+L R A++TP GG + G+A SPC A+TMS+ Sbjct: 145 NVLEKRDEAEKTPVGGCFLAQLQSGGRAEYSPCRANTMSS 184
>CR2_MOUSE (P19070) Complement receptor type 2 precursor (Cr2) (Complement C3d| receptor) (CD21 antigen) Length = 1025 Score = 29.3 bits (64), Expect = 6.6 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = -1 Query: 285 SQAVPPGVLCAYKRRWSKLVILCRI-ICSTLVL*FSSG 175 SQ PP LC Y RRWS + ++C I + S L++ S G Sbjct: 949 SQWNPPLALCKY-RRWSTIPLICGISVGSALIILMSVG 985
>ODO1_STAS1 (Q49XM5) 2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2)| (Alpha-ketoglutarate dehydrogenase) Length = 933 Score = 29.3 bits (64), Expect = 6.6 Identities = 22/66 (33%), Positives = 29/66 (43%) Frame = -1 Query: 474 GRLAVTAEVFEVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIVWAWQGDVPALPGA 295 GRL V V E ++ + EF H +D KF ED G + W GDV G Sbjct: 245 GRLNVLTHVLEKPYEMMISEFMH-----IDPMKFLPED---GSLQLTSGWTGDVKYHLGG 296 Query: 294 VA*SQA 277 V +Q+ Sbjct: 297 VKTTQS 302
>ATX2L_HUMAN (Q8WWM7) Ataxin-2-like protein (Ataxin-2 domain protein)| (Ataxin-2-related protein) Length = 1075 Score = 28.9 bits (63), Expect = 8.6 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Frame = +2 Query: 254 AQRTPGGTA*DHATAPGKAGTS-----------PCHAHTMSASPGRTSSAQNLLKSSASP 400 A+R PGGT+ + PG TS PC +A G A+ +L P Sbjct: 24 ARRPPGGTSPPNGGLPGPLATSAAPPGPPAAASPCLGPVAAAGSGLRRGAEGILAPQPPP 83 Query: 401 P 403 P Sbjct: 84 P 84
>PTGA_SHIFL (P69785) Glucose-specific phosphotransferase enzyme IIA component| (EC 2.7.1.-) (PTS system glucose-specific EIIA component) (EIIA-Glc) (EIII-Glc) Length = 168 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = -1 Query: 504 RMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALD-----FNKFCAEDVRPGLAD 340 +M A DG G++ T F + +D V F H G D ++ F + E R + D Sbjct: 58 KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGD 117 Query: 339 IVWAWQGDVPAL 304 V + D+P L Sbjct: 118 TVIEF--DLPLL 127
>PTGA_ECOLI (P69783) Glucose-specific phosphotransferase enzyme IIA component| (EC 2.7.1.-) (PTS system glucose-specific EIIA component) (EIIA-Glc) (EIII-Glc) Length = 168 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = -1 Query: 504 RMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALD-----FNKFCAEDVRPGLAD 340 +M A DG G++ T F + +D V F H G D ++ F + E R + D Sbjct: 58 KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGD 117 Query: 339 IVWAWQGDVPAL 304 V + D+P L Sbjct: 118 TVIEF--DLPLL 127
>PTGA_ECOL6 (P69784) Glucose-specific phosphotransferase enzyme IIA component| (EC 2.7.1.-) (PTS system glucose-specific EIIA component) (EIIA-Glc) (EIII-Glc) Length = 168 Score = 28.9 bits (63), Expect = 8.6 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 5/72 (6%) Frame = -1 Query: 504 RMEAKADGANGRLAVTAEVFEVAADVTVVEFAHDGGDALD-----FNKFCAEDVRPGLAD 340 +M A DG G++ T F + +D V F H G D ++ F + E R + D Sbjct: 58 KMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGD 117 Query: 339 IVWAWQGDVPAL 304 V + D+P L Sbjct: 118 TVIEF--DLPLL 127
>TCMA_STRGA (P39886) Tetracenomycin C resistance and export protein| Length = 538 Score = 28.9 bits (63), Expect = 8.6 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = -1 Query: 489 ADGANGR-----LAVTAEVFEVAADVTVVEFAHDGGDALDFNKFCAEDVRPGLADIVWAW 325 A G GR LAV V VA D T+V A N +D+ LAD+ W Sbjct: 17 ASGLRGRPWPTLLAVAVGVMMVALDSTIVAIA---------NPAIQQDLHASLADVQWIT 67 Query: 324 QGDVPAL 304 G + AL Sbjct: 68 NGYLLAL 74 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,551,137 Number of Sequences: 219361 Number of extensions: 1154467 Number of successful extensions: 3284 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3214 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3283 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3812186532 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
