ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
2dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
3dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic D... 200 3e-48
4dbj|AK100881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
5dbj|AK061493.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
6dbj|AK061220.1| Oryza sativa (japonica cultivar-group) cDNA clon... 200 3e-48
7gb|BT019076.1| Zea mays clone Contig656.F mRNA sequence 135 2e-28
8dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
9dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic D... 50 0.007
10gb|AC125815.6| Homo sapiens 3 BAC RP11-168E23 (Roswell Park Canc... 48 0.028
11gb|AC117479.4| Homo sapiens 3 BAC RP11-490P18 (Roswell Park Canc... 48 0.028
12gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 44 0.44
13emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 44 0.44
14emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome... 44 0.44
15emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 44 0.44
16emb|AL929418.14| Mouse DNA sequence from clone RP23-268M1 on chr... 44 0.44
17gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, c... 44 0.44
18gb|AD000002.1|MSGY154 Mycobacterium tuberculosis sequence from c... 44 0.44
19gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 geno... 42 1.8
20ref|XM_482813.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.8
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.8
22emb|AL731549.11| Human DNA sequence from clone RP11-113I9 on chr... 42 1.8
23emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chro... 42 1.8
24emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chro... 42 1.8
25gb|AF265548.1| Oryza sativa meiotic protein Dmc1A (DMC1A) gene, ... 42 1.8
26dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
28dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
29dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.8
30dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
31dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
32dbj|AK108845.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.8
33gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, co... 42 1.8
34gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 42 1.8
35gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.8
36emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb... 42 1.8
37dbj|AP006552.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.8
38gb|M34180.1|STMBLAC2 S.lavendulae beta-lactamase gene, complete cds 42 1.8
39gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 6.9
40gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 6.9
41gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6... 40 6.9
42gb|AY190692.1| Pagrus major DEAD/H box polypeptide mRNA, partial... 40 6.9
43gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.9
44gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 40 6.9
45gb|DQ017128.1| Sanguinaria canadensis RNA polymerase II second l... 40 6.9
46gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 6.9
47gb|AC158340.9| Mus musculus chromosome 1, clone RP24-161N8, comp... 40 6.9
48gb|AC102781.5| Mus musculus chromosome 1, clone RP23-271G2, comp... 40 6.9
49gb|AC135465.23| Medicago truncatula clone mth2-24h22, complete s... 40 6.9
50emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 6.9
51emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 6.9
52emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete ... 40 6.9
53gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 40 6.9
54gb|AC154624.2| Mus musculus BAC clone RP23-330P24 from chromosom... 40 6.9
55gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.9
56gb|AC021534.19| Homo sapiens chromosome 17, clone RP11-398J5, co... 40 6.9
57dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.9
58gb|AE004518.1| Pseudomonas aeruginosa PAO1, section 79 of 529 of... 40 6.9
59emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.9
60gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.9
61gb|U73506.1|PAU73506 Pseudomonas aeruginosa ornithine utilizatio... 40 6.9
62emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chro... 40 6.9
63gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Can... 40 6.9
64dbj|D45382.2|STMAFSK1 Streptomyces coelicolor genes for KbpA, af... 40 6.9 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Plus

                                                                            
Query: 316      gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
                |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 14954708 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 14954767

                                                                            
Query: 376      cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
                ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 14954768 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 14954827

                                                                            
Query: 436      ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
                ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 14954828 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 14954887

                     
Query: 496      ctcca 500
                |||||
Sbjct: 14954888 ctcca 14954892
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>dbj|AP005784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0014G10
          Length = 164147

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Plus

                                                                          
Query: 316    gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
              |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 163047 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 163106

                                                                          
Query: 376    cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
              ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 163107 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 163166

                                                                          
Query: 436    ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
              ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 163167 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 163226

                   
Query: 496    ctcca 500
              |||||
Sbjct: 163227 ctcca 163231
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>dbj|AP005429.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0701F11
          Length = 154950

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Plus

                                                                         
Query: 316   gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
             |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 24154 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 24213

                                                                         
Query: 376   cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
             ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 24214 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 24273

                                                                         
Query: 436   ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
             ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 24274 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 24333

                  
Query: 496   ctcca 500
             |||||
Sbjct: 24334 ctcca 24338
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>dbj|AK100881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127H10, full
            insert sequence
          Length = 1533

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 316  gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
            |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 1356 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 1297

                                                                        
Query: 376  cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
            ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 1296 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 1237

                                                                        
Query: 436  ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
            ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 1236 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 1177

                 
Query: 496  ctcca 500
            |||||
Sbjct: 1176 ctcca 1172
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>dbj|AK061493.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-B11, full
            insert sequence
          Length = 1535

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 316  gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
            |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 1358 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 1299

                                                                        
Query: 376  cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
            ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 1298 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 1239

                                                                        
Query: 436  ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
            ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 1238 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 1179

                 
Query: 496  ctcca 500
            |||||
Sbjct: 1178 ctcca 1174
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>dbj|AK061220.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-E11, full
            insert sequence
          Length = 1656

 Score =  200 bits (101), Expect = 3e-48
 Identities = 164/185 (88%)
 Strand = Plus / Minus

                                                                        
Query: 316  gtcgccctgccacgcccacacaatgtccgcgagcccagggcgcacgtcctcggcgcagaa 375
            |||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||
Sbjct: 1479 gtcgccctgccacgcccagacaatgtcggcgagccccggccgcacgtcgacggcgcagaa 1420

                                                                        
Query: 376  cttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacggtcacgtcggc 435
            ||||||||| |||||| |||||||| |||||||||||||||||||||| |  ||||||||
Sbjct: 1419 cttgttgaactcgagctcgtcgccggcgtcgtgcgcgaactcgaccaccgcgacgtcggc 1360

                                                                        
Query: 436  ggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgtcggccttggc 495
            ||||||||||| | ||||| |||||||||| ||||||||||| || ||||| ||| | ||
Sbjct: 1359 ggccacctcgagcgcctcgacggtgaccgcgagccgcccgtttgctccgtccgccgtcgc 1300

                 
Query: 496  ctcca 500
            |||||
Sbjct: 1299 ctcca 1295
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>gb|BT019076.1| Zea mays clone Contig656.F mRNA sequence
          Length = 1306

 Score =  135 bits (68), Expect = 2e-28
 Identities = 119/136 (87%)
 Strand = Plus / Minus

                                                                       
Query: 366 cggcgcagaacttgttgaagtcgagcgcgtcgccgccgtcgtgcgcgaactcgaccacgg 425
           ||||||| |||||||| ||||| |||||||| ||| |||||||| |||||||||||||||
Sbjct: 974 cggcgcaaaacttgttaaagtccagcgcgtccccggcgtcgtgcacgaactcgaccacgg 915

                                                                       
Query: 426 tcacgtcggcggccacctcgaacacctcggcggtgaccgctagccgcccgttggcgccgt 485
            | ||||  |||||||||||| ||||||||||||| |||| ||||| ||||| | ||| |
Sbjct: 914 ccccgtccacggccacctcgagcacctcggcggtggccgcgagccgtccgttcgtgccct 855

                           
Query: 486 cggccttggcctccat 501
           ||||||||||||||||
Sbjct: 854 cggccttggcctccat 839
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 13     aaactttgcatatatgatatatgta 37
              |||||||||||||||||||||||||
Sbjct: 439754 aaactttgcatatatgatatatgta 439730
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>dbj|AP004342.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0585H11
          Length = 149371

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 13    aaactttgcatatatgatatatgta 37
             |||||||||||||||||||||||||
Sbjct: 41918 aaactttgcatatatgatatatgta 41894
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>gb|AC125815.6| Homo sapiens 3 BAC RP11-168E23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 39991

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 19    tgcatatatgatatatgtacacat 42
             ||||||||||||||||||||||||
Sbjct: 39870 tgcatatatgatatatgtacacat 39893
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>gb|AC117479.4| Homo sapiens 3 BAC RP11-490P18 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 145285

 Score = 48.1 bits (24), Expect = 0.028
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 19   tgcatatatgatatatgtacacat 42
            ||||||||||||||||||||||||
Sbjct: 1879 tgcatatatgatatatgtacacat 1902
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 443     tcgaacacctcggcggtgaccg 464
               ||||||||||||||||||||||
Sbjct: 3054406 tcgaacacctcggcggtgaccg 3054385



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 443     tcgaacacctcggcggtgac 462
               ||||||||||||||||||||
Sbjct: 2915441 tcgaacacctcggcggtgac 2915422
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>emb|BX248343.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 10/14
          Length = 307550

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 443    tcgaacacctcggcggtgaccg 464
              ||||||||||||||||||||||
Sbjct: 198757 tcgaacacctcggcggtgaccg 198736



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   tcgaacacctcggcggtgac 462
             ||||||||||||||||||||
Sbjct: 69245 tcgaacacctcggcggtgac 69226
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>emb|BX842580.1| Mycobacterium tuberculosis H37Rv complete genome; segment 9/13
          Length = 346051

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 443    tcgaacacctcggcggtgaccg 464
              ||||||||||||||||||||||
Sbjct: 286647 tcgaacacctcggcggtgaccg 286626



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    tcgaacacctcggcggtgac 462
              ||||||||||||||||||||
Sbjct: 146261 tcgaacacctcggcggtgac 146242
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>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 429   cgtcggcggccacctcgaacac 450
             ||||||||||||||||||||||
Sbjct: 68119 cgtcggcggccacctcgaacac 68140
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>emb|AL929418.14| Mouse DNA sequence from clone RP23-268M1 on chromosome 11 Contains a
             novel gene, complete sequence
          Length = 93419

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 81    agtctcgtcatctacaaacacc 102
             ||||||||||||||||||||||
Sbjct: 16988 agtctcgtcatctacaaacacc 16967
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>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence
          Length = 3131724

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 436     ggccacctcgaacacctcggcg 457
               ||||||||||||||||||||||
Sbjct: 1593691 ggccacctcgaacacctcggcg 1593712
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>gb|AD000002.1|MSGY154 Mycobacterium tuberculosis sequence from clone y154
          Length = 40221

 Score = 44.1 bits (22), Expect = 0.44
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 443  tcgaacacctcggcggtgaccg 464
            ||||||||||||||||||||||
Sbjct: 5746 tcgaacacctcggcggtgaccg 5767
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>gb|AC091775.10| Oryza sativa chromosome 3 BAC OSJNBa0004G17 genomic sequence, complete
             sequence
          Length = 139074

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 19    tgcatatatgatatatgtaca 39
             |||||||||||||||||||||
Sbjct: 98191 tgcatatatgatatatgtaca 98211
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>ref|XM_482813.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1265

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 387 cgagcgcgtcgccgccgtcgt 407
           |||||||||||||||||||||
Sbjct: 730 cgagcgcgtcgccgccgtcgt 710
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 19       tgcatatatgatatatgtaca 39
                |||||||||||||||||||||
Sbjct: 28054916 tgcatatatgatatatgtaca 28054896
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>emb|AL731549.11| Human DNA sequence from clone RP11-113I9 on chromosome 10 Contains part
             of the gene for alpha-catenin-like protein (MGC26194)
             (VR22), complete sequence
          Length = 81853

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    atatatgatatatgtacacat 42
             |||||||||||||||||||||
Sbjct: 49436 atatatgatatatgtacacat 49416
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>emb|AL772155.6| Human DNA sequence from clone RP11-149F8 on chromosome 9 Contains a
             novel gene, two novel pseudogenes, a  pseudogene similar
             to part of myosin V family protein, a tumor suppressor
             deleted in oral cancer-related 1 (DOC-1R) pseudogene, a
             pseudogene similar to part of prostaglandin E receptor 4
             (subtype EP4) (PTGER4) and a CpG island, complete sequence
          Length = 163569

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atatatgatatatgtacacat 42
             |||||||||||||||||||||
Sbjct: 52296 atatatgatatatgtacacat 52316
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>emb|AL592220.6| Human DNA sequence from clone RP11-12P21 on chromosome 9 Contains a
             tumor suppressor deleted in oral cancer-related 1 (DOC-1R)
             pseudogene, a novel pseudogene and a CpG island, complete
             sequence
          Length = 163556

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 22    atatatgatatatgtacacat 42
             |||||||||||||||||||||
Sbjct: 52279 atatatgatatatgtacacat 52299
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>gb|AF265548.1| Oryza sativa meiotic protein Dmc1A (DMC1A) gene, complete cds
          Length = 7054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 385  gtcgagcgcgtcgccgccgtcgtgc 409
            ||||| |||||||||||||||||||
Sbjct: 6707 gtcgatcgcgtcgccgccgtcgtgc 6683
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 385     gtcgagcgcgtcgccgccgtcgtgc 409
               ||||| |||||||||||||||||||
Sbjct: 2151940 gtcgatcgcgtcgccgccgtcgtgc 2151964
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 387      cgagcgcgtcgccgccgtcgt 407
                |||||||||||||||||||||
Sbjct: 22704633 cgagcgcgtcgccgccgtcgt 22704653
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 19       tgcatatatgatatatgtaca 39
                |||||||||||||||||||||
Sbjct: 28146240 tgcatatatgatatatgtaca 28146220
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 441    cctcgaacacctcggcggtgaccgc 465
              |||||||||||||||||||| ||||
Sbjct: 326701 cctcgaacacctcggcggtgcccgc 326677



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 430    gtcggcggccacctcgaaca 449
              ||||||||||||||||||||
Sbjct: 127142 gtcggcggccacctcgaaca 127161
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>dbj|AP005871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1116H04
          Length = 140142

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   cgagcgcgtcgccgccgtcgt 407
             |||||||||||||||||||||
Sbjct: 31275 cgagcgcgtcgccgccgtcgt 31295
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>dbj|AP005405.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1111C03
          Length = 144879

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 387   cgagcgcgtcgccgccgtcgt 407
             |||||||||||||||||||||
Sbjct: 73427 cgagcgcgtcgccgccgtcgt 73447
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>dbj|AK108845.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-152-A01, full
           insert sequence
          Length = 1265

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 387 cgagcgcgtcgccgccgtcgt 407
           |||||||||||||||||||||
Sbjct: 730 cgagcgcgtcgccgccgtcgt 710
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>gb|AC101935.10| Mus musculus chromosome 15, clone RP24-76H22, complete sequence
          Length = 216277

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 22     atatatgatatatgtacacat 42
              |||||||||||||||||||||
Sbjct: 167139 atatatgatatatgtacacat 167159
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 385     gtcgagcgcgtcgccgccgtcgtgc 409
               ||||||||||||||||||| |||||
Sbjct: 2736254 gtcgagcgcgtcgccgccgacgtgc 2736230



 Score = 40.1 bits (20), Expect = 6.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 386    tcgagcgcgtcgccgccgtcgtgcgcga 413
              ||||||||||||  ||||||||||||||
Sbjct: 715551 tcgagcgcgtcgatgccgtcgtgcgcga 715524
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 385     gtcgagcgcgtcgccgccgtcgtgc 409
               ||||| |||||||||||||||||||
Sbjct: 2151884 gtcgatcgcgtcgccgccgtcgtgc 2151908
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>emb|AL928756.4|CNS08CBT Oryza sativa chromosome 12, . BAC OSJNBb0077O07 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 132703

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 385   gtcgagcgcgtcgccgccgtcgtgc 409
             ||||| |||||||||||||||||||
Sbjct: 34164 gtcgatcgcgtcgccgccgtcgtgc 34188
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>dbj|AP006552.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT28G12, TM0107,
             complete sequence
          Length = 97172

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 20    gcatatatgatatatgtacacatcg 44
             ||||||||||||||| |||||||||
Sbjct: 96231 gcatatatgatatatatacacatcg 96207
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>gb|M34180.1|STMBLAC2 S.lavendulae beta-lactamase gene, complete cds
          Length = 948

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 393 cgtcgccgccgtcgtgcgcgaactcgacc 421
           ||||||||||||| ||||||| |||||||
Sbjct: 294 cgtcgccgccgtcctgcgcgacctcgacc 322
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>gb|AC155099.1| Medicago truncatula chromosome 7 BAC clone mth2-144f20, complete
             sequence
          Length = 132371

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ttgcatatatgatatatgta 37
             ||||||||||||||||||||
Sbjct: 21729 ttgcatatatgatatatgta 21710
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>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 378     tgttgaagtcgagcgcgtcg 397
               ||||||||||||||||||||
Sbjct: 3279711 tgttgaagtcgagcgcgtcg 3279692
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>gb|AE014834.1| Plasmodium falciparum 3D7 chromosome 10 section 6 of 7 of the complete
              sequence
          Length = 253001

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ttgcatatatgatatatgta 37
              ||||||||||||||||||||
Sbjct: 103488 ttgcatatatgatatatgta 103469
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>gb|AY190692.1| Pagrus major DEAD/H box polypeptide mRNA, partial cds
          Length = 687

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  gtctcgtcatctacaaacac 101
           ||||||||||||||||||||
Sbjct: 374 gtctcgtcatctacaaacac 355
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 473    ccgttggcgccgtcggcctt 492
              ||||||||||||||||||||
Sbjct: 634449 ccgttggcgccgtcggcctt 634430
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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     cgagcgcgtcgccgccgtcg 406
               ||||||||||||||||||||
Sbjct: 3229780 cgagcgcgtcgccgccgtcg 3229799
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>gb|DQ017128.1| Sanguinaria canadensis RNA polymerase II second largest subunit
           (RPB2) gene, exons 11 through 17 and partial cds
          Length = 1705

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 19  tgcatatatgatatatgtac 38
           ||||||||||||||||||||
Sbjct: 826 tgcatatatgatatatgtac 845
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 437    gccacctcgaacacctcggc 456
              ||||||||||||||||||||
Sbjct: 930442 gccacctcgaacacctcggc 930461
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>gb|AC158340.9| Mus musculus chromosome 1, clone RP24-161N8, complete sequence
          Length = 163123

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   aagaaaactatagaactaaa 199
             ||||||||||||||||||||
Sbjct: 77376 aagaaaactatagaactaaa 77357
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>gb|AC102781.5| Mus musculus chromosome 1, clone RP23-271G2, complete sequence
          Length = 198393

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    aagaaaactatagaactaaa 199
              ||||||||||||||||||||
Sbjct: 172173 aagaaaactatagaactaaa 172192
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>gb|AC135465.23| Medicago truncatula clone mth2-24h22, complete sequence
          Length = 109043

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ttgcatatatgatatatgta 37
              ||||||||||||||||||||
Sbjct: 101239 ttgcatatatgatatatgta 101220
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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 451   ctcggcggtgaccgctagccgccc 474
             ||||||||||||||| ||||||||
Sbjct: 63968 ctcggcggtgaccgcgagccgccc 63991
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 303  gcaaggcgggcacgtcgccc 322
            ||||||||||||||||||||
Sbjct: 8615 gcaaggcgggcacgtcgccc 8596
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>emb|AL939112.1|SCO939112 Streptomyces coelicolor A3(2) complete genome; segment 9/29
          Length = 300800

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 480    cgccgtcggccttggcctcc 499
              ||||||||||||||||||||
Sbjct: 281602 cgccgtcggccttggcctcc 281583
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 474     cgttggcgccgtcggccttggcct 497
               |||||||||| |||||||||||||
Sbjct: 2260970 cgttggcgccttcggccttggcct 2260947
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>gb|AC154624.2| Mus musculus BAC clone RP23-330P24 from chromosome 13, complete sequence
          Length = 185935

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     catatatgatatatgtacac 40
              ||||||||||||||||||||
Sbjct: 132299 catatatgatatatgtacac 132280
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 402    cgtcgtgcgcgaactcgaccacgg 425
              ||||| ||||||||||||||||||
Sbjct: 651795 cgtcgcgcgcgaactcgaccacgg 651772
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>gb|AC021534.19| Homo sapiens chromosome 17, clone RP11-398J5, complete sequence
          Length = 185419

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 299    cccggcaaggcgggcacgtc 318
              ||||||||||||||||||||
Sbjct: 118255 cccggcaaggcgggcacgtc 118236
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 479     gcgccgtcggccttggcctc 498
               ||||||||||||||||||||
Sbjct: 6549786 gcgccgtcggccttggcctc 6549805
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>gb|AE004518.1| Pseudomonas aeruginosa PAO1, section 79 of 529 of the complete
           genome
          Length = 10647

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 434 gcggccacctcgaacacctcggcg 457
           ||||||||| ||||||||||||||
Sbjct: 664 gcggccaccccgaacacctcggcg 641
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 307     ggcgggcacgtcgccctgcc 326
               ||||||||||||||||||||
Sbjct: 3637494 ggcgggcacgtcgccctgcc 3637475
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 441     cctcgaacacctcggcggtgaccg 464
               ||||||||||||||||||| ||||
Sbjct: 3185137 cctcgaacacctcggcggtcaccg 3185114
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>gb|U73506.1|PAU73506 Pseudomonas aeruginosa ornithine utilization regulatory (oruR)
           gene, complete cds
          Length = 1216

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 434 gcggccacctcgaacacctcggcg 457
           ||||||||| ||||||||||||||
Sbjct: 659 gcggccaccccgaacacctcggcg 636
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>emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chromosome 17, complete
              sequence
          Length = 219471

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ttgcatatatgatatatgta 37
              ||||||||||||||||||||
Sbjct: 180587 ttgcatatatgatatatgta 180568
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>gb|AC153936.3| Mus musculus 10 BAC RP24-114G19 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170723

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 22     atatatgatatatgtacaca 41
              ||||||||||||||||||||
Sbjct: 135243 atatatgatatatgtacaca 135262
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>dbj|D45382.2|STMAFSK1 Streptomyces coelicolor genes for KbpA, afsK, orfB and afsS,
           complete cds
          Length = 8199

 Score = 40.1 bits (20), Expect = 6.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 303 gcaaggcgggcacgtcgccc 322
           ||||||||||||||||||||
Sbjct: 255 gcaaggcgggcacgtcgccc 236


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,697,944
Number of Sequences: 3902068
Number of extensions: 3697944
Number of successful extensions: 92328
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90185
Number of HSP's gapped (non-prelim): 2143
length of query: 513
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 490
effective length of database: 17,143,297,704
effective search space: 8400215874960
effective search space used: 8400215874960
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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