>COX1_STRPU (P15544) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 517

 Score = 28.9 bits (63), Expect = 7.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 456 GEVLTIVSNYSSTREHTGVMGLVYILVA 373
           G +  ++++YS  RE  G +GLVY ++A
Sbjct: 252 GMISHVIAHYSGKREPFGYLGLVYAMIA 279

>UBP4_YEAST (P32571) Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)|
           (Ubiquitin thioesterase 4)
           (Ubiquitin-specific-processing protease 4)
           (Deubiquitinating enzyme 4) (Vacuole biogenesis protein
           SSV7)
          Length = 926

 Score = 28.5 bits (62), Expect = 9.9
 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = -1

Query: 222 AVDQSSS*L*DGCVFVIPLLTS*YIYKSSHQSVGNVISMDHQFLMLCN*SLSVVA---VY 52
           A DQ  S L D C+ ++       IYK + + + N+IS  ++  M+ + S+ ++    VY
Sbjct: 43  AKDQDLSSLLDKCIDILS------IYKKNSKDIKNIISCKNKGAMISSNSVMIIQLNYVY 96

Query: 51  KAELYELITT 22
              ++ ++TT
Sbjct: 97  YKVIHIIVTT 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,373,007
Number of Sequences: 219361
Number of extensions: 1078231
Number of successful extensions: 2333
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2332
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3362826254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)