ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32f07 |
|---|---|
| Clone Library Name | barley_pub |
>SPOP_MOUSE (Q6ZWS8) Speckle-type POZ protein (PDX-1 C-terminal-interacting| factor 1) (PCIF1) Length = 374 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = -1 Query: 488 LGRLRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYL 309 L RL+++CE LC ++ H A +LK + F + S V+ T G+ + Sbjct: 282 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSM 341 Query: 308 KDTCPSLQSEILRTVAGCEEP 246 + P L +E R++A + P Sbjct: 342 VVSHPHLVAEAYRSLASAQCP 362
>SPOP_HUMAN (O43791) Speckle-type POZ protein| Length = 374 Score = 40.0 bits (92), Expect = 0.003 Identities = 22/81 (27%), Positives = 38/81 (46%) Frame = -1 Query: 488 LGRLRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYL 309 L RL+++CE LC ++ H A +LK + F + S V+ T G+ + Sbjct: 282 LERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHASDVLETSGWKSM 341 Query: 308 KDTCPSLQSEILRTVAGCEEP 246 + P L +E R++A + P Sbjct: 342 VVSHPHLVAEAYRSLASAQCP 362
>TDPZ2_MOUSE (Q717B2) TD and POZ domain-containing protein 2| Length = 364 Score = 36.6 bits (83), Expect = 0.037 Identities = 18/76 (23%), Positives = 35/76 (46%) Frame = -1 Query: 479 LRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYLKDT 300 L+++CE LC+++ H +LK L F A + S V ++ G+ + ++ Sbjct: 275 LKVICEDSLCRNLSVENAAHTLIVADLHSTEQLKTRALHFIAVHASEVSKSSGWKSMVES 334 Query: 299 CPSLQSEILRTVAGCE 252 P L E ++A + Sbjct: 335 HPHLVDERFHSLASAQ 350
>TDPZ1_MOUSE (Q717B3) TD and POZ domain-containing protein 1 (MAPP family| protein 2) Length = 365 Score = 36.6 bits (83), Expect = 0.037 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Frame = -1 Query: 479 LRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYLKDT 300 L++LCE LC+++ H +LK L F A S V T + + ++ Sbjct: 275 LKVLCEDALCRNLSVKNATHTLILADLHSTEKLKTQALDFIAYYASEVCETSEWKSMVES 334 Query: 299 CPSLQSEILRTVAGCE----EPCSSGGKSQ 222 P L +E +++A + EP G +Q Sbjct: 335 HPHLVAEAFQSLASAQCSFLEPKVISGSNQ 364
>TDPZ4_MOUSE (Q6YCH2) TD and POZ domain-containing protein 4| Length = 370 Score = 33.9 bits (76), Expect = 0.24 Identities = 17/76 (22%), Positives = 33/76 (43%) Frame = -1 Query: 479 LRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYLKDT 300 L+++CE LC+++ H +K L F S V +T G+ + ++ Sbjct: 275 LKVMCEDALCRNLSVENAAHTLIVADLHSTEHVKTQALDFIIVYASEVSKTSGWMSMVES 334 Query: 299 CPSLQSEILRTVAGCE 252 P L +E ++A + Sbjct: 335 HPRLVAEAFHSLASAQ 350
>TDPZ5_MOUSE (Q6YCH1) TD and POZ domain-containing protein 5| Length = 340 Score = 33.5 bits (75), Expect = 0.31 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = -1 Query: 479 LRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYLKDT 300 L++LCE LC+++ H +LK L F A + S V T + + +T Sbjct: 275 LKVLCEDALCRNLSVENAAQTLILADLHKREQLKTQALYFIALHASVVSETSEWKSMMET 334 Query: 299 CPSL 288 P L Sbjct: 335 HPHL 338
>IPPK_RAT (Q5PXE9) Inositol-pentakisphosphate 2-kinase (EC 2.7.1.-)| (Inositol-1,3,4,5,6-pentakisphosphate 2-kinase) (Ins(1,3,4,5,6)P5 2-kinase) (InsP5 2-kinase) (rIPK1) Length = 489 Score = 31.2 bits (69), Expect = 1.6 Identities = 20/62 (32%), Positives = 28/62 (45%) Frame = +2 Query: 143 VQGGLRFLASPYGRSCRHRPTAVPIHSGSSRHYCTAPHTQQPFSVSPTEVMGRYP*GNQT 322 +QG ASP+ RS H+ P HSG + C T Q + ++ G YP N+ Sbjct: 285 LQGARVCEASPFSRSLHHQGKNTPEHSGLPKG-CLLYKTLQVQMLDQLDIEGLYPLYNRV 343 Query: 323 HQ 328 Q Sbjct: 344 EQ 345
>TDPZ3_MOUSE (Q717B4) TD and POZ domain-containing protein 3| Length = 365 Score = 30.0 bits (66), Expect = 3.5 Identities = 17/76 (22%), Positives = 33/76 (43%) Frame = -1 Query: 479 LRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGFDYLKDT 300 L++LCE LC+++ + +LK+ L F A + V T + + + Sbjct: 275 LKVLCEDVLCRNLSVKNAAHTLILAELNSTEKLKSQALDFIAIHACEVSETSEWKSMWKS 334 Query: 299 CPSLQSEILRTVAGCE 252 P L +E ++A + Sbjct: 335 HPHLVAEAFHSLASAK 350
>PI3R6_HUMAN (Q5UE93) Phosphoinositide 3-kinase regulatory subunit 6| (Phosphoinositide 3-kinase gamma adapter protein of 87 kDa) (p87 PI3K adapter protein) (p87PIKAP) Length = 754 Score = 29.6 bits (65), Expect = 4.5 Identities = 14/49 (28%), Positives = 23/49 (46%) Frame = -1 Query: 308 KDTCPSLQSEILRTVAGCEEPCSSGGKSQSVWGQLSDGGDTSGRRVRPR 162 KD + + + VA C EPCS KS++ W L + + +P+ Sbjct: 692 KDDQRTFRDVVRFEVAPCPEPCSGAQKSKAPWLNLHGQQEVEAIKAKPK 740
>RCBT1_MOUSE (Q6NXM2) RCC1 and BTB domain-containing protein 1 (Regulator of| chromosome condensation and BTB domain-containing protein 1) Length = 531 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = -1 Query: 482 RLRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGF 318 RL+ LC+ + + I + A +L+ C KF +L+ V +T F Sbjct: 454 RLKRLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAF 508
>RCBT1_HUMAN (Q8NDN9) RCC1 and BTB domain-containing protein 1 (Regulator of| chromosome condensation and BTB domain-containing protein 1) (Chronic lymphocytic leukemia deletion region gene 7 protein) (CLL deletion region gene 7 protein) Length = 531 Score = 28.9 bits (63), Expect = 7.7 Identities = 14/55 (25%), Positives = 24/55 (43%) Frame = -1 Query: 482 RLRLLCESYLCKDIXXXXXXXXXXXXXSHHAMELKAVCLKFAAENLSAVIRTDGF 318 RL+ LC+ + + I + A +L+ C KF +L+ V +T F Sbjct: 454 RLKKLCQHIIKRGITVENAFSLFSAAVRYDAEDLEEFCFKFCINHLTEVTQTAAF 508 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,212,498 Number of Sequences: 219361 Number of extensions: 1388149 Number of successful extensions: 3287 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3283 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3420806017 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
