ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32f07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_186474.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1275 Score = 315 bits (159), Expect = 7e-83 Identities = 282/323 (87%) Strand = Plus / Minus Query: 161 ttcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacac 220 |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct: 1270 ttcttggcctaaccctacggccactcgtgtcaccaccatccgagagctgaccccacacgc 1211 Query: 221 tctggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatct 280 |||||||||| ||||| || |||||| ||| || || || || | ||||||||||||| Sbjct: 1210 tctggctcttgccgccgctgctgcactcctcttcgcagccggcgagagttctcagtatct 1151 Query: 281 ccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacag 340 | || ||||||||||||||| | |||||||||||||| || || || |||||||| |||| Sbjct: 1150 cggattgaagtgatgggcagttgtccttgaggtaatcgaatccttcggtccggattacag 1091 Query: 341 ctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgac 400 ||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| | Sbjct: 1090 ctgaaaggttttctgcagcaaactttaggcaaacagctttaagctccatagcatggtgtc 1031 Query: 401 tatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaag 460 |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 1030 gatcagccaatgctagagtacttgcaactgtagccacagaaatggctttgcacaagtaag 971 Query: 461 attcacatagcaatcttaacctt 483 |||||||||||||||||| |||| Sbjct: 970 attcacatagcaatcttagcctt 948
>dbj|AK120608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151F13, full insert sequence Length = 1663 Score = 315 bits (159), Expect = 7e-83 Identities = 282/323 (87%) Strand = Plus / Minus Query: 161 ttcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacac 220 |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct: 1368 ttcttggcctaaccctacggccactcgtgtcaccaccatccgagagctgaccccacacgc 1309 Query: 221 tctggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatct 280 |||||||||| ||||| || |||||| ||| || || || || | ||||||||||||| Sbjct: 1308 tctggctcttgccgccgctgctgcactcctcttcgcagccggcgagagttctcagtatct 1249 Query: 281 ccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacag 340 | || ||||||||||||||| | |||||||||||||| || || || |||||||| |||| Sbjct: 1248 cggattgaagtgatgggcagttgtccttgaggtaatcgaatccttcggtccggattacag 1189 Query: 341 ctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgac 400 ||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| | Sbjct: 1188 ctgaaaggttttctgcagcaaactttaggcaaacagctttaagctccatagcatggtgtc 1129 Query: 401 tatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaag 460 |||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||| Sbjct: 1128 gatcagccaatgctagagtacttgcaactgtagccacagaaatggctttgcacaagtaag 1069 Query: 461 attcacatagcaatcttaacctt 483 |||||||||||||||||| |||| Sbjct: 1068 attcacatagcaatcttagcctt 1046
>gb|AY106145.1| Zea mays PCO096759 mRNA sequence Length = 517 Score = 224 bits (113), Expect = 2e-55 Identities = 217/249 (87%), Gaps = 2/249 (0%) Strand = Plus / Minus Query: 190 tcgccaccgtccgacagctgtccccatacactctggctcttcccgccactactgcacggc 249 |||||||||||||| ||||| || || || |||||||||||||| |||| |||||| | Sbjct: 276 tcgccaccgtccgagagctgcccacaaacgctctggctcttcccaacactgctgcactgg 217 Query: 250 tcctcacacccagcaaccgttctcagtatctccgactgaagtgatgggcaggtatccttg 309 ||||||||||| ||||| ||| |||||||||| ||||| || ||||||||| | |||||| Sbjct: 216 tcctcacaccctgcaacagttttcagtatctctgactggagagatgggcagttgtccttg 157 Query: 310 aggtaa-tcaaacccatcagtccggatcacagctgaaagattttctgcggcaaattttag 368 |||||| | |||||| ||| |||| || ||||||||||||||||| || ||||||||||| Sbjct: 156 aggtaaatgaaaccc-tcactccgcattacagctgaaagattttcagcagcaaattttag 98 Query: 369 gcaaacagctttaagctccatggcgtggtgactatcagccaatgcaagagtacttgcaac 428 |||||||||||||||||||||||| ||||| |||||||||||||| | ||||| ||||| Sbjct: 97 gcaaacagctttaagctccatggcatggtgcctatcagccaatgctaacgtactcgcaac 38 Query: 429 tgaggccac 437 ||||||||| Sbjct: 37 tgaggccac 29
>ref|XM_469952.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1293 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 1286 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 1227 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 1226 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 1167 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 1166 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 1107 Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgacta 402 ||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 1106 gaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtcgg 1047 Query: 403 tcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagat 462 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||||| Sbjct: 1046 tcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaagat 987 Query: 463 tcaca 467 ||||| Sbjct: 986 tcaca 982
>gb|AY224567.1| Oryza sativa (japonica cultivar-group) isolate 29942 zinc finger POZ domain protein mRNA, partial cds Length = 552 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 545 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 486 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 485 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 426 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 425 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 366 Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgacta 402 ||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 365 gaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtcgg 306 Query: 403 tcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagat 462 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||||| Sbjct: 305 tcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaagat 246 Query: 463 tcaca 467 ||||| Sbjct: 245 tcaca 241
>dbj|AK100829.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123B19, full insert sequence Length = 1545 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 1403 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 1344 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 1343 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 1284 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 1283 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 1224 Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgacta 402 ||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 1223 gaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtcgg 1164 Query: 403 tcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagat 462 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||||| Sbjct: 1163 tcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaagat 1104 Query: 463 tcaca 467 ||||| Sbjct: 1103 tcaca 1099
>dbj|AK068848.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013164G10, full insert sequence Length = 1650 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 1355 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 1296 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 1295 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 1236 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 1235 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 1176 Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgacta 402 ||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 1175 gaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtcgg 1116 Query: 403 tcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagat 462 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||||| Sbjct: 1115 tcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaagat 1056 Query: 463 tcaca 467 ||||| Sbjct: 1055 tcaca 1051
>dbj|AK058879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A05, full insert sequence Length = 1183 Score = 208 bits (105), Expect = 1e-50 Identities = 255/305 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 824 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 765 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 764 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 705 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 704 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 645 Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgacta 402 ||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 644 gaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtcgg 585 Query: 403 tcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagat 462 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||||| Sbjct: 584 tcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaagat 525 Query: 463 tcaca 467 ||||| Sbjct: 524 tcaca 520
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 190 bits (96), Expect = 3e-45 Identities = 135/148 (91%) Strand = Plus / Plus Query: 336 cacagctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtg 395 |||| ||||||| |||||||| ||||| |||||||||||||||||||||||||| || || Sbjct: 3644277 cacacctgaaaggttttctgcagcaaactttaggcaaacagctttaagctccatagcatg 3644336 Query: 396 gtgactatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaa 455 ||| | |||||||||||| |||||||||||||||| |||||||||||| |||||||||| Sbjct: 3644337 gtgtcgatcagccaatgctagagtacttgcaactgtagccacagaaatggctttgcacaa 3644396 Query: 456 gtaagattcacatagcaatcttaacctt 483 ||||||||||||||||||||||| |||| Sbjct: 3644397 gtaagattcacatagcaatcttagcctt 3644424 Score = 133 bits (67), Expect = 6e-28 Identities = 154/183 (84%) Strand = Plus / Plus Query: 161 ttcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacac 220 |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct: 3643299 ttcttggcctaaccctacggccactcgtgtcaccaccatccgagagctgaccccacacgc 3643358 Query: 221 tctggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatct 280 |||||||||| ||||| || |||||| ||| || || || || | ||||||||||||| Sbjct: 3643359 tctggctcttgccgccgctgctgcactcctcttcgcagccggcgagagttctcagtatct 3643418 Query: 281 ccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacag 340 | || ||||||||||||||| | |||||||||||||| || || || |||||||| |||| Sbjct: 3643419 cggattgaagtgatgggcagttgtccttgaggtaatcgaatccttcggtccggattacag 3643478 Query: 341 ctg 343 ||| Sbjct: 3643479 ctg 3643481 Score = 44.1 bits (22), Expect = 0.42 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagc 384 ||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 3576143 gaaaggttttctgcagcaaatttgag-caaacagctttaagc 3576103
>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1641_C04 Length = 134367 Score = 190 bits (96), Expect = 3e-45 Identities = 135/148 (91%) Strand = Plus / Plus Query: 336 cacagctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtg 395 |||| ||||||| |||||||| ||||| |||||||||||||||||||||||||| || || Sbjct: 113594 cacacctgaaaggttttctgcagcaaactttaggcaaacagctttaagctccatagcatg 113653 Query: 396 gtgactatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaa 455 ||| | |||||||||||| |||||||||||||||| |||||||||||| |||||||||| Sbjct: 113654 gtgtcgatcagccaatgctagagtacttgcaactgtagccacagaaatggctttgcacaa 113713 Query: 456 gtaagattcacatagcaatcttaacctt 483 ||||||||||||||||||||||| |||| Sbjct: 113714 gtaagattcacatagcaatcttagcctt 113741 Score = 133 bits (67), Expect = 6e-28 Identities = 154/183 (84%) Strand = Plus / Plus Query: 161 ttcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacac 220 |||||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||||| || | Sbjct: 112616 ttcttggcctaaccctacggccactcgtgtcaccaccatccgagagctgaccccacacgc 112675 Query: 221 tctggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatct 280 |||||||||| ||||| || |||||| ||| || || || || | ||||||||||||| Sbjct: 112676 tctggctcttgccgccgctgctgcactcctcttcgcagccggcgagagttctcagtatct 112735 Query: 281 ccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacag 340 | || ||||||||||||||| | |||||||||||||| || || || |||||||| |||| Sbjct: 112736 cggattgaagtgatgggcagttgtccttgaggtaatcgaatccttcggtccggattacag 112795 Query: 341 ctg 343 ||| Sbjct: 112796 ctg 112798 Score = 44.1 bits (22), Expect = 0.42 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagc 384 ||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 45460 gaaaggttttctgcagcaaatttgag-caaacagctttaagc 45420
>gb|AY110523.1| Zea mays CL49535_1 mRNA sequence Length = 899 Score = 149 bits (75), Expect = 1e-32 Identities = 268/331 (80%), Gaps = 1/331 (0%) Strand = Plus / Plus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| |||||||| ||||| || ||||| | Sbjct: 155 gtctcagacccttggcctcaccctgcgaccgctggtgtcgccgccgtcagagagctgcgc 214 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 |||||| |||||||| ||| |||| || || || | |||||||| || ||||| || | Sbjct: 215 ccatacgctctggcttttcacgccgctgctacattgttcctcacatccggcaactgtccg 274 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 ||||||||| ||||| || ||||||||| | || ||||| || || || || |||||||| Sbjct: 275 cagtatctctgactgcagggatgggcagttgtctttgagatagtcgaaaccctcagtccg 334 Query: 333 gatcacagctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggc 392 |||||||||||| || | || | |||||||| |||||||| | |||||||||||| || Sbjct: 335 gatcacagctgacaggtctt-tcgagcaaatttgaggcaaacggatttaagctccatagc 393 Query: 393 gtggtgactatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgca 452 ||||| | |||||||||||| |||||| |||| || || |||||||| | ||||| Sbjct: 394 atggtgccgatcagccaatgctagagtagttgccacggaatttacagaaatatgcttgca 453 Query: 453 caagtaagattcacatagcaatcttaacctt 483 ||||||||||||||| | |||||||| |||| Sbjct: 454 caagtaagattcacacaacaatcttagcctt 484
>gb|AC090871.11| Oryza sativa chromosome 3 BAC OSJNBb0060J21 genomic sequence, complete sequence Length = 162497 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Plus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 83635 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 83694 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 83695 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 83754 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 83755 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 83814 Query: 343 g 343 | Sbjct: 83815 g 83815 Score = 93.7 bits (47), Expect = 5e-16 Identities = 107/127 (84%) Strand = Plus / Plus Query: 341 ctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgac 400 ||||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 85777 ctgaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtc 85836 Query: 401 tatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaag 460 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||| Sbjct: 85837 ggtcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaag 85896 Query: 461 attcaca 467 ||||||| Sbjct: 85897 attcaca 85903
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 32660272 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 32660213 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 32660212 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 32660153 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 32660152 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 32660093 Query: 343 g 343 | Sbjct: 32660092 g 32660092 Score = 93.7 bits (47), Expect = 5e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 341 ctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgac 400 ||||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 32658130 ctgaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtc 32658071 Query: 401 tatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaag 460 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||| Sbjct: 32658070 ggtcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaag 32658011 Query: 461 attcaca 467 ||||||| Sbjct: 32658010 attcaca 32658004
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 121 bits (61), Expect = 2e-24 Identities = 151/181 (83%) Strand = Plus / Minus Query: 163 cttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtccccatacactc 222 |||||||||||||| || ||||| || ||||| || ||||| ||||| ||||| || ||| Sbjct: 32750782 cttggcctcaccctgcgcccgctggtatcgccgccatccgagagctgcccccacacgctc 32750723 Query: 223 tggctcttcccgccactactgcacggctcctcacacccagcaaccgttctcagtatctcc 282 ||||||||||| || || ||||| |||||||||||| || ||||| |||||||||||| Sbjct: 32750722 tggctcttccctccgctgctgcattcctcctcacacccggcgaccgtcctcagtatctcc 32750663 Query: 283 gactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccggatcacagct 342 || || || | |||||| | || ||||||||||||||||| || |||||||| |||||| Sbjct: 32750662 gattgcagcgcggggcagttgtctttgaggtaatcaaacccgtcggtccggattacagct 32750603 Query: 343 g 343 | Sbjct: 32750602 g 32750602 Score = 93.7 bits (47), Expect = 5e-16 Identities = 107/127 (84%) Strand = Plus / Minus Query: 341 ctgaaagattttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgac 400 ||||||||||||| || ||||||||||||||||||| |||||||||||| || || || | Sbjct: 32748640 ctgaaagattttcagcagcaaattttaggcaaacagatttaagctccatagcatgatgtc 32748581 Query: 401 tatcagccaatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaag 460 ||||||||||| || ||| |||| || ||| |||||||| | ||||||||||||| Sbjct: 32748580 ggtcagccaatgctagggtagttgccacagagtttacagaaatatgcttgcacaagtaag 32748521 Query: 461 attcaca 467 ||||||| Sbjct: 32748520 attcaca 32748514
>gb|AC159612.1| Zea mays chromosome 5S clone ZMMBBb0511I12 map bin: 5.00, complete sequence Length = 50000 Score = 109 bits (55), Expect = 9e-21 Identities = 157/191 (82%) Strand = Plus / Plus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| |||||||| ||||| || ||||| | Sbjct: 42016 gtctcagacccttggcctcaccctgcgcccgctggtgtcgccgccgtcagagagctgcgc 42075 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| ||| || || || |||||||||||||| ||||| || | Sbjct: 42076 ccacacgctctggcttttcaagccgctgctacatggctcctcacacccggcaactgtccg 42135 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 ||||||||| ||||| || ||||||||| | || ||||| || || || || |||||||| Sbjct: 42136 cagtatctctgactgcagagatgggcagttgtctttgagatagtcgaaaccctcagtccg 42195 Query: 333 gatcacagctg 343 ||||||||||| Sbjct: 42196 gatcacagctg 42206 Score = 93.7 bits (47), Expect = 5e-16 Identities = 113/135 (83%) Strand = Plus / Plus Query: 349 ttttctgcggcaaattttaggcaaacagctttaagctccatggcgtggtgactatcagcc 408 ||||| || |||||||| |||||||| | |||||||||||| || ||||| | ||||||| Sbjct: 42847 ttttcggcagcaaatttgaggcaaacggatttaagctccatagcatggtgccgatcagcc 42906 Query: 409 aatgcaagagtacttgcaactgaggccacagaaatgtctttgcacaagtaagattcacat 468 ||||| |||||| |||| || || |||||||| | |||||||||||||||||||| Sbjct: 42907 aatgctagagtagttgccacggaatttacagaaatatgcttgcacaagtaagattcacac 42966 Query: 469 agcaatcttaacctt 483 | ||||||||||||| Sbjct: 42967 aacaatcttaacctt 42981
>gb|DQ428994.1| Sorghum propinquum locus pSB0239 genomic sequence Length = 782 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 731 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 672 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || || ||||||||||| ||||| || | Sbjct: 671 ccacacgctctggcttttcacaccgctgctacatggttcctcacacccggcaactgtccg 612 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 611 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 552 Query: 333 gatcacagctg 343 ||||||||||| Sbjct: 551 gatcacagctg 541
>gb|DQ428993.1| Sorghum bicolor voucher PI585454 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428992.1| Sorghum bicolor voucher PI267539 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428991.1| Sorghum bicolor voucher PI267408 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428990.1| Sorghum bicolor voucher PI221607 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428989.1| Sorghum bicolor voucher PI152702 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428988.1| Sorghum bicolor voucher NSL92371 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428987.1| Sorghum bicolor voucher NSL87902 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428986.1| Sorghum bicolor voucher NSL87666 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428985.1| Sorghum bicolor voucher NSL77217 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428984.1| Sorghum bicolor voucher NSL77034 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428983.1| Sorghum bicolor voucher NSL56174 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428982.1| Sorghum bicolor voucher NSL56003 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428981.1| Sorghum bicolor voucher NSL55243 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428980.1| Sorghum bicolor voucher NSL51365 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428979.1| Sorghum bicolor voucher NSL51030 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>gb|DQ428978.1| Sorghum bicolor voucher NSL50875 locus pSB0239 genomic sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 152/191 (79%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctcaccctacggccgctcgtgtcgccaccgtccgacagctgtcc 212 |||||||| |||||||||||||| || ||||| ||||| || ||||| || ||||| | Sbjct: 721 gtctcagacccttggcctcaccctgcgcccgctggtgtcaccgccgtcagagagctgcgc 662 Query: 213 ccatacactctggctcttcccgccactactgcacggctcctcacacccagcaaccgttct 272 ||| || |||||||| ||| | || || || || |||||||||||||| ||||| || | Sbjct: 661 ccacacgctctggcttttcacaccgctgctacatggctcctcacacccggcaactgtccg 602 Query: 273 cagtatctccgactgaagtgatgggcaggtatccttgaggtaatcaaacccatcagtccg 332 |||||||| ||||| || ||| |||| | || ||||| || || ||||| || ||||| Sbjct: 601 tagtatctctgactgcagagatatgcagttgtctttgagatagtcgaacccctcggtccg 542 Query: 333 gatcacagctg 343 |||||| |||| Sbjct: 541 gatcaccgctg 531
>emb|CR954186.2| Medicago truncatula chromosome 5 clone mth2-117e18, COMPLETE SEQUENCE Length = 113233 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 358 gcaaattttaggcaaacagcttt 380 ||||||||||||||||||||||| Sbjct: 38357 gcaaattttaggcaaacagcttt 38379
>emb|AL591893.9| Human DNA sequence from clone RP11-353M1 on chromosome 1 Contains the 3' end of a novel gene, the S100A11 gene for S100 calcium binding protein A11 (calgizzarin), a pseudogene similar to part of serine palmitoyltransferase long chain base subunit 1 (SPTLC1) and a novel gene, complete sequence Length = 75281 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctca 172 |||| |||||||||||||||||||||| Sbjct: 34270 caggctggtctcagattcttggcctca 34296
>emb|AJ246003.1|HSA246003 Homo sapiens Spast gene for spastin protein Length = 110000 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctca 172 ||||||||||||||| ||||||||||| Sbjct: 94367 cagggtggtctcagactcttggcctca 94393
>gb|AC108157.3| Homo sapiens BAC clone RP11-580P21 from 4, complete sequence Length = 167001 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctca 172 |||| |||||||||||||||||||||| Sbjct: 21311 caggctggtctcagattcttggcctca 21337
>gb|AC013722.8| Homo sapiens BAC clone RP11-299H21 from 2, complete sequence Length = 207576 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 146 cagggtggtctcagattcttggcctca 172 ||||||||||||| ||||||||||||| Sbjct: 8646 cagggtggtctcaaattcttggcctca 8620
>emb|AL121658.4|CNS01DS8 BAC sequence from the SPG4 candidate region at 2p21-2p22 BAC 563N04 of library RPCI-11 from chromosome 2 of Homo sapiens (Human) Length = 162692 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctca 172 ||||||||||||||| ||||||||||| Sbjct: 75627 cagggtggtctcagactcttggcctca 75653
>gb|AC132347.4| Mus musculus BAC clone RP24-186F6 from chromosome 13, complete sequence Length = 155751 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 tacacaagagcctcctaaccag 136 |||||||||||||||||||||| Sbjct: 58334 tacacaagagcctcctaaccag 58313
>gb|AC123945.4| Mus musculus BAC clone RP24-87G13 from chromosome 14, complete sequence Length = 207945 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 151 tggtctcagattcttggcctca 172 |||||||||||||||||||||| Sbjct: 107124 tggtctcagattcttggcctca 107103
>emb|Z83855.2|HSN104C4 Human DNA sequence from clone LL22NC03-104C4 on chromosome 22, complete sequence Length = 40203 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 78 tgttgtcacaaaatacagaaca 99 |||||||||||||||||||||| Sbjct: 29569 tgttgtcacaaaatacagaaca 29548
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 44.1 bits (22), Expect = 0.42 Identities = 38/42 (90%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 343 gaaagattttctgcggcaaattttaggcaaacagctttaagc 384 ||||| |||||||| |||||||| || ||||||||||||||| Sbjct: 114093 gaaaggttttctgcagcaaatttgag-caaacagctttaagc 114053
>emb|AL352979.4|CNS05TBZ Human chromosome 14 DNA sequence BAC R-368P15 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 155692 Score = 44.1 bits (22), Expect = 0.42 Identities = 28/30 (93%) Strand = Plus / Minus Query: 143 gttcagggtggtctcagattcttggcctca 172 |||||||||||||||| | ||||||||||| Sbjct: 84468 gttcagggtggtctcaaactcttggcctca 84439
>gb|AC146453.3| Pan troglodytes BAC clone CH251-510F17 from Y, complete sequence Length = 215114 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 180718 ggtctcagattcttggcctca 180738
>gb|AC147675.2| Pan troglodytes BAC clone CH251-6P20 from Y, complete sequence Length = 166567 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 38431 ggtctcagattcttggcctca 38411
>gb|AY843750.1| Rhacophorus bipunctatus 12S ribosomal RNA gene, partial sequence; tRNA-Val gene, complete sequence; and 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 2400 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 aattgttccccgatttacaca 120 ||||||||||||||||||||| Sbjct: 20 aattgttccccgatttacaca 40
>gb|AC139189.1| Pan troglodytes BAC clone RP43-7D3 from Y, complete sequence Length = 164874 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 130216 ggtctcagattcttggcctca 130196 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 20232 ggtctcagattcttggcctca 20252
>dbj|BS000613.2| Pan troglodytes chromosome Y clone:PTB-311E10, complete sequences Length = 71006 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 11305 ggtctcagattcttggcctca 11325
>dbj|BS000669.1| Pan troglodytes chromosome Y clone:PTB-529M03, complete sequences Length = 163369 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 91413 ggtctcagattcttggcctca 91393
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 21849376 ggtctcagattcttggcctca 21849356 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 21739401 ggtctcagattcttggcctca 21739421
>gb|AC011749.2|AC011749 Homo sapiens BAC clone RP11-455E3 from Y, complete sequence Length = 205053 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 158961 ggtctcagattcttggcctca 158981
>gb|AC010135.3|AC010135 Homo sapiens BAC clone RP11-128D13 from Y, complete sequence Length = 176951 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 152 ggtctcagattcttggcctca 172 ||||||||||||||||||||| Sbjct: 46915 ggtctcagattcttggcctca 46895
>emb|BX000705.13| Zebrafish DNA sequence from clone DKEY-76D18, complete sequence Length = 255779 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 83 tcacaaaatacagaacaaatt 103 ||||||||||||||||||||| Sbjct: 84375 tcacaaaatacagaacaaatt 84355
>gb|AC146891.3| Dasypus novemcinctus clone VMRC5-364E4, complete sequence Length = 133673 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 aaaatacagaacaaattgtt 106 |||||||||||||||||||| Sbjct: 67705 aaaatacagaacaaattgtt 67724
>gb|AC165074.2| Mus musculus BAC clone RP24-501F1 from chromosome 12, complete sequence Length = 166016 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 84 cacaaaatacagaacaaattgttc 107 |||||||||||||| ||||||||| Sbjct: 61139 cacaaaatacagaagaaattgttc 61162
>gb|AC005567.1| Homo sapiens chromosome 16, cosmid clone 431F1 (LANL), complete sequence Length = 41073 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 20539 tcaggctggtctcagattcctggcctca 20566
>gb|AY598423.1| Homo sapiens Fanconi anemia, complementation group A (FANCA) gene, partial cds Length = 79079 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 27458 tcaggctggtctcagattcctggcctca 27485
>gb|AC147374.4| Mus musculus BAC clone RP24-230D18 from chromosome 3, complete sequence Length = 165708 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 77 ctgttgtcacaaaatacaga 96 |||||||||||||||||||| Sbjct: 164000 ctgttgtcacaaaatacaga 163981
>gb|AC102091.7| Mus musculus chromosome 18, clone RP23-9K20, complete sequence Length = 252563 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gtctcagattcttggcctca 172 |||||||||||||||||||| Sbjct: 176159 gtctcagattcttggcctca 176178
>emb|CR456641.8| Zebrafish DNA sequence from clone DKEY-69N13 in linkage group 23, complete sequence Length = 98020 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aaaatacagaacaaattgtt 106 |||||||||||||||||||| Sbjct: 14423 aaaatacagaacaaattgtt 14404
>gb|AC099315.3| Papio anubis clone RP41-403I2, complete sequence Length = 167836 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 39880 caggctggtctcaaattcttggcctcac 39907
>gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence Length = 203201 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| |||||||| ||||||||||||| Sbjct: 59318 tcaggctggtctcaaattcttggcctca 59345
>gb|AC131710.3| Mus musculus BAC clone RP23-187M22 from 15, complete sequence Length = 224591 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 359 caaattttaggcaaacagct 378 |||||||||||||||||||| Sbjct: 115284 caaattttaggcaaacagct 115303
>gb|AC111013.3| Mus musculus BAC clone RP24-223F21 from 3, complete sequence Length = 144931 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 ctgttgtcacaaaatacaga 96 |||||||||||||||||||| Sbjct: 121396 ctgttgtcacaaaatacaga 121415
>ref|XM_650140.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein (33.t00039) partial mRNA Length = 1092 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 acaaaatacagaacaaattg 104 |||||||||||||||||||| Sbjct: 720 acaaaatacagaacaaattg 739
>emb|BX664742.15| Zebrafish DNA sequence from clone DKEY-193L3 in linkage group 8, complete sequence Length = 215608 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 76680 caaaatacagaacaaattgt 76661
>emb|Z95889.1|HS211A9 Human DNA sequence from clone CTA-211A9 on chromosome 22q12.1, complete sequence Length = 117939 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctcac 173 ||||||||||||| ||||||| |||||| Sbjct: 22451 cagggtggtctcaaattcttgacctcac 22478
>gb|AC138134.6| Mus musculus strain C57BL/6J clone rp23-382i2 map 18, complete sequence Length = 202316 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 153 gtctcagattcttggcctca 172 |||||||||||||||||||| Sbjct: 22383 gtctcagattcttggcctca 22402
>emb|AL161657.22| Human DNA sequence from clone RP11-46O3 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 92132 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 27468 tcaggctggtctcagattcctggcctca 27441
>emb|AL096818.9|HSJ262C15 Human DNA sequence from clone RP1-262C15 on chromosome 6q16.1-21 Contains part of a novel gene, complete sequence Length = 14310 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 caagagcctcctaaccagag 138 |||||||||||||||||||| Sbjct: 4119 caagagcctcctaaccagag 4100
>gb|AC090587.10| Homo sapiens chromosome 11, clone RP11-348A20, complete sequence Length = 165459 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 cagggtggtctcagattcttggcc 169 |||| ||||||||||||||||||| Sbjct: 16536 caggctggtctcagattcttggcc 16513
>emb|AL645803.19| Mouse DNA sequence from clone RP23-119N24 on chromosome 11 Contains the 5' end of the Ddc gene for dopa decarboxylase, a novel gene and the 3' end of the Grb10 gene for growth factor receptor bound protein 10, complete sequence Length = 128744 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 150 gtggtctcagattcttggcc 169 |||||||||||||||||||| Sbjct: 18388 gtggtctcagattcttggcc 18369
>emb|AL603785.4| Zebrafish DNA sequence from clone BUSM1-46M7 Contains a novel gene similar to EDG2 (lysophosphatidic acid receptor), the 3' part of a gene for a novel kinase, a novel transposase pseudogene and a CpG island, complete sequence Length = 89874 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 72150 caaaatacagaacaaattgt 72169
>emb|BX664746.10| Zebrafish DNA sequence from clone DKEY-218P9 in linkage group 8, complete sequence Length = 106404 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 59549 caaaatacagaacaaattgt 59530
>gb|AC004024.4| Homo sapiens 12q24.2 PAC RP1-128M12 (Roswell Park Cancer Institute Human PAC library) complete sequence Length = 79158 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 gtctcagattcttggcctca 172 |||||||||||||||||||| Sbjct: 42939 gtctcagattcttggcctca 42920
>emb|BX469906.11| Zebrafish DNA sequence from clone DKEY-127K9 in linkage group 2, complete sequence Length = 170409 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 110121 caaaatacagaacaaattgt 110140
>gb|AC104248.3| Homo sapiens chromosome 8, clone RP11-1084E5, complete sequence Length = 200318 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 176645 caggctggtctcaaattcttggcctcac 176672
>emb|BX601644.6| Zebrafish DNA sequence from clone DKEY-21O13 in linkage group 9, complete sequence Length = 217065 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 98105 caaaatacagaacaaattgt 98086
>gb|AC109480.3| Homo sapiens chromosome 5 clone RP11-455B3, complete sequence Length = 191923 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 gcacaagtaagattcacatagcaa 473 |||||||||||||||| ||||||| Sbjct: 38729 gcacaagtaagattcaaatagcaa 38752
>gb|AC104945.4| Homo sapiens chromosome 8, clone RP11-384L9, complete sequence Length = 181328 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 178966 caggctggtctcaaattcttggcctcac 178939
>gb|AC087435.5| Homo sapiens chromosome 8, clone RP11-79O20, complete sequence Length = 158447 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 81172 caggctggtctcaaattcttggcctcac 81145
>gb|AC019306.10| Homo sapiens chromosome 18, clone RP11-326M20, complete sequence Length = 175840 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 270 tctcagtatctccgactgaagtga 293 |||||||||||| ||||||||||| Sbjct: 155497 tctcagtatctcagactgaagtga 155474
>gb|AC010748.5| Homo sapiens BAC clone CTD-2532L16 from 16, complete sequence Length = 145459 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 130463 tcaggctggtctcagattcctggcctca 130490
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 ggccgctcgtgtcgccaccg 198 |||||||||||||||||||| Sbjct: 4052938 ggccgctcgtgtcgccaccg 4052919
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| |||||||| ||||||||||||| Sbjct: 1064661 tcaggctggtctcaaattcttggcctca 1064688
>gb|AC020904.7| Homo sapiens chromosome 19 clone CTB-52I2, complete sequence Length = 148824 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 96969 tcaggctggtctcagattcctggcctca 96942
>gb|AC008834.7| Homo sapiens chromosome 5 clone CTD-2147G20, complete sequence Length = 191096 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 gcacaagtaagattcacatagcaa 473 |||||||||||||||| ||||||| Sbjct: 41981 gcacaagtaagattcaaatagcaa 41958
>gb|AC092289.3| Homo sapiens chromosome 16 clone CTD-2305H1, complete sequence Length = 129293 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 145 tcagggtggtctcagattcttggcctca 172 ||||| ||||||||||||| |||||||| Sbjct: 64068 tcaggctggtctcagattcctggcctca 64095
>dbj|AP008246.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1642C07 Length = 206004 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 231 cccgccactactgcacggctcctc 254 |||||||| ||||||||||||||| Sbjct: 133112 cccgccaccactgcacggctcctc 133135
>gb|AC060812.15| Homo sapiens chromosome 11, clone RP11-120E20, complete sequence Length = 184106 Score = 40.1 bits (20), Expect = 6.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcc 169 |||| ||||||||||||||||||| Sbjct: 70689 caggctggtctcagattcttggcc 70712
>ref|XM_314285.2| Anopheles gambiae str. PEST ENSANGP00000001136 (ENSANGG00000000975), partial mRNA Length = 9390 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 425 caactgaggccacagaaatg 444 |||||||||||||||||||| Sbjct: 4409 caactgaggccacagaaatg 4428
>emb|AL929229.6| Zebrafish DNA sequence from clone CH211-1E14 in linkage group 18, complete sequence Length = 184794 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 70 gttaaaactgttgtcacaaaatacagaa 97 ||||| |||||| ||||||||||||||| Sbjct: 136699 gttaacactgttatcacaaaatacagaa 136672
>emb|CR377211.7| Zebrafish DNA sequence from clone DKEYP-13A3 in linkage group 2, complete sequence Length = 186342 Score = 40.1 bits (20), Expect = 6.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 caaaatacagaacaaattgt 105 |||||||||||||||||||| Sbjct: 76861 caaaatacagaacaaattgt 76880
>dbj|AP004284.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1268B10 Length = 145226 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 26530 caggctggtctcaaattcttggcctcac 26557
>dbj|AP004580.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1461G7 Length = 168155 Score = 40.1 bits (20), Expect = 6.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 146 cagggtggtctcagattcttggcctcac 173 |||| |||||||| |||||||||||||| Sbjct: 154846 caggctggtctcaaattcttggcctcac 154873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,181,995 Number of Sequences: 3902068 Number of extensions: 4181995 Number of successful extensions: 82836 Number of sequences better than 10.0: 95 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 82568 Number of HSP's gapped (non-prelim): 263 length of query: 488 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 466 effective length of database: 17,147,199,772 effective search space: 7990595093752 effective search space used: 7990595093752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
