ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IN21_MAIZE (P49248) IN2-1 protein 142 5e-34
2AFAM_HUMAN (P43652) Afamin precursor (Alpha-albumin) (Alpha-Alb) 32 0.71
3DPOE_YARLI (Q6C4J0) DNA polymerase epsilon, catalytic subunit A ... 30 3.5
4ADA22_MOUSE (Q9R1V6) ADAM 22 precursor (A disintegrin and metall... 30 4.6
5SYV_PHOPR (Q6LUW1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 29 7.8

>IN21_MAIZE (P49248) IN2-1 protein|
          Length = 243

 Score =  142 bits (358), Expect = 5e-34
 Identities = 69/91 (75%), Positives = 78/91 (85%)
 Frame = -1

Query: 492 VAALDKIEAALSKFSDGPFLLGQFSLVDIAYVTILERVQIYYSHLRNYEITKDRPNLERY 313
           VAALDK+EA LSKF DGPF LGQFSL D+AYVTILERVQIYYSHLRNY+I + RPNL+ +
Sbjct: 153 VAALDKLEADLSKFDDGPFFLGQFSLADVAYVTILERVQIYYSHLRNYDIAQGRPNLQEF 212

Query: 312 TEDMNKIEAYKQTKNAPLTLLEAAKRHLKIA 220
            ++MNKIEAY QTKN PL LL+ AK HLKIA
Sbjct: 213 IDEMNKIEAYAQTKNDPLFLLDLAKSHLKIA 243



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>AFAM_HUMAN (P43652) Afamin precursor (Alpha-albumin) (Alpha-Alb)|
          Length = 599

 Score = 32.3 bits (72), Expect = 0.71
 Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 5/94 (5%)
 Frame = -1

Query: 411 DIAYVTILERVQIYYSHLRNYEITKDRPNLERYTEDMNKIEAYKQTKNAPLTLLEAAKRH 232
           D++   +L  VQIY   LRN   T++ P   RY ED      + +T    L +++   +H
Sbjct: 364 DLSIPELLRIVQIYKDLLRNCCNTENPPGCYRYAED-----KFNETTEKSLKMVQQECKH 418

Query: 231 LKIA*RSGDVAKDNGRY-----VGTVAPELAKTE 145
            +      ++ KD  +Y     +  +AP+L+  E
Sbjct: 419 FQ------NLGKDGLKYHYLIRLTKIAPQLSTEE 446



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>DPOE_YARLI (Q6C4J0) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
            (DNA polymerase II subunit A)
          Length = 2183

 Score = 30.0 bits (66), Expect = 3.5
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = +1

Query: 379  NPLQDRHVRNIHQAKLAKEERAVAELG 459
            +PL+D HV  I++A ++ + RA+ ELG
Sbjct: 1406 SPLKDPHVTKIYEADVSPDSRALIELG 1432



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>ADA22_MOUSE (Q9R1V6) ADAM 22 precursor (A disintegrin and metalloproteinase|
           domain 22)
          Length = 904

 Score = 29.6 bits (65), Expect = 4.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 246 LQARLAGHFWFACMLRSCSCPRCISQGWACL 338
           +QA  A  FW  C+L +C   RC   G A L
Sbjct: 1   MQAAAAASFWLLCVLGTCPLARCGRAGVASL 31



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>SYV_PHOPR (Q6LUW1) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 953

 Score = 28.9 bits (63), Expect = 7.8
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -1

Query: 345 ITKDRPNLERYTEDMNKIEAYKQT 274
           ITK+R  LE Y E + K+EA K+T
Sbjct: 926 ITKEREKLEGYQETLVKLEAQKET 949


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,331,824
Number of Sequences: 219361
Number of extensions: 1358221
Number of successful extensions: 4021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4020
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3465624120
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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