>PTPRK_HUMAN (Q15262) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1439

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 223 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 259

>PTPRK_MOUSE (P35822) Receptor-type tyrosine-protein phosphatase kappa precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase kappa)
           (R-PTP-kappa)
          Length = 1457

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 116 STHTKIWEIGKNVNSLQTGQRKILHHRSYSASLHTSE 226
           + H K+W   +N   +   Q K ++HR ++AS    E
Sbjct: 222 AVHNKLWLQRRNGEDIPVAQTKNINHRRFAASFRLQE 258

>TAGG_BACSU (P42953) Teichoic acid translocation permease protein tagG|
          Length = 275

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 20/70 (28%), Positives = 35/70 (50%)
 Frame = -2

Query: 221 MYASSLSKIYGEVSSVDQFVTSLRFYLFPRFWCVYSSCKMLGSLCGRIKP*YKTYPMWAT 42
           ++ S++S +  +   + Q VT L F+L P FW V +    LG     + P  K  P++  
Sbjct: 169 LFNSTISVLIRDYQFLLQAVTRLLFFLLPIFWDVNAK---LGQSHPELVPVLKLNPLF-- 223

Query: 41  YGCKGWNKSY 12
           Y  +G+  S+
Sbjct: 224 YIIEGFRNSF 233

>NOL6_MOUSE (Q8R5K4) Nucleolar protein 6 (Nucleolar RNA-associated protein)|
           (Nrap)
          Length = 1141

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -3

Query: 136 PDFGVCTPHVKCWAACVVALNPNIKLIR--CGQHTDVKDGINLI 11
           PD+   TPH   W    VAL  ++ L+    G    +KDG+ L+
Sbjct: 283 PDYEPPTPHYNTWILQDVALETHMHLLASVLGSAQGLKDGVALL 326

>PRKDC_HUMAN (P78527) DNA-dependent protein kinase catalytic subunit (EC 2.7.11.1)|
            (DNA-PK catalytic subunit) (DNA-PKcs) (DNPK1) (p460)
          Length = 4128

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 148  FTYFPDFGVCTPHVKCWAACVVALNPNIKLIRCGQHTDVKDGINLID 8
            F++FP F  C   + C  A +++L+P      C        GI L++
Sbjct: 2848 FSFFPPFVSCIQDISCQHAALLSLDPAAVSAGCLASLQQPVGIRLLE 2894

>MURC_PROMA (Q7VEJ1) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)|
           (UDP-N-acetylmuramoyl-L-alanine synthetase)
          Length = 472

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 94  ACVVALNPNIKLIRCGQHTDVKDGINL 14
           +C +A NPN+ +  C Q  D+++ INL
Sbjct: 418 SCTLANNPNLPIFTCKQLRDLENIINL 444


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,098,870
Number of Sequences: 219361
Number of extensions: 747379
Number of successful extensions: 1743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 80,573,946
effective HSP length: 64
effective length of database: 66,534,842
effective search space used: 1596836208
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)