Clone Name | rbart32f04 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073185.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001M17, full insert sequence Length = 1340 Score = 137 bits (69), Expect = 4e-29 Identities = 111/125 (88%) Strand = Plus / Minus Query: 361 ccatacttgctatgggagttcagtagcagatggtagactgggtcttggtacgacacttgg 420 ||||||||| |||| ||||||| | ||| ||| |||| ||||||| |||||||||||||| Sbjct: 1040 ccatacttgttatgagagttcaatggcacatgatagattgggtctcggtacgacacttgg 981 Query: 421 agaagttgaaccacaatgtagccacatgttgtgatgcttccaaagcatatcaacaagcat 480 | |||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 980 aaaagttgtatgacaatgtagccacatgtcgtgatgcttccaaagcatattaacaagcat 921 Query: 481 atcca 485 ||||| Sbjct: 920 atcca 916 Score = 40.1 bits (20), Expect = 6.8 Identities = 53/62 (85%), Gaps = 4/62 (6%) Strand = Plus / Minus Query: 198 attattgtgtaccaagaa---cataccccttcaatgag-ttttcagatcttcctacattt 253 |||||||| ||||||||| |||| | ||||||||| |||||| |||||||||||||| Sbjct: 1205 attattgtataccaagaataacataactcttcaatgatattttcaaatcttcctacattt 1146 Query: 254 ca 255 || Sbjct: 1145 ca 1144
>dbj|AK070987.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023076E04, full insert sequence Length = 1018 Score = 135 bits (68), Expect = 2e-28 Identities = 107/120 (89%) Strand = Plus / Minus Query: 366 cttgctatgggagttcagtagcagatggtagactgggtcttggtacgacacttggagaag 425 |||| |||| ||||||| ||||| ||| |||| ||||||| ||||||||||||||| ||| Sbjct: 799 cttgttatgagagttcaatagcacatgatagattgggtctcggtacgacacttggaaaag 740 Query: 426 ttgaaccacaatgtagccacatgttgtgatgcttccaaagcatatcaacaagcatatcca 485 ||| | ||||||||||||||||| |||||||||||||||||||| |||||||||||||| Sbjct: 739 ttgtatgacaatgtagccacatgtcgtgatgcttccaaagcatattaacaagcatatcca 680
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 361 ccatacttgctatgggagttcagtagcagatggtagactgggtcttggtacgacacttgg 420 ||||||||| |||| ||||||| ||||| ||| |||| ||||||| |||||||||||||| Sbjct: 22356379 ccatacttgttatgagagttcaatagcacatgatagattgggtctcggtacgacacttgg 22356320 Query: 421 agaagttgaaccacaatgtagccacatgttgtgatgct 458 | |||||| | ||||||||||||||||| |||||||| Sbjct: 22356319 aaaagttgtatgacaatgtagccacatgtcgtgatgct 22356282 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 457 cttccaaagcatatcaacaagcatatcca 485 |||||||||||||| |||||||||||||| Sbjct: 22355612 cttccaaagcatattaacaagcatatcca 22355584 Score = 40.1 bits (20), Expect = 6.8 Identities = 53/62 (85%), Gaps = 4/62 (6%) Strand = Plus / Minus Query: 198 attattgtgtaccaagaa---cataccccttcaatgag-ttttcagatcttcctacattt 253 |||||||| ||||||||| |||| | ||||||||| |||||| |||||||||||||| Sbjct: 22356544 attattgtataccaagaataacataactcttcaatgatattttcaaatcttcctacattt 22356485 Query: 254 ca 255 || Sbjct: 22356484 ca 22356483
>dbj|AP003630.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0566A10 Length = 174367 Score = 99.6 bits (50), Expect = 8e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 361 ccatacttgctatgggagttcagtagcagatggtagactgggtcttggtacgacacttgg 420 ||||||||| |||| ||||||| ||||| ||| |||| ||||||| |||||||||||||| Sbjct: 134802 ccatacttgttatgagagttcaatagcacatgatagattgggtctcggtacgacacttgg 134743 Query: 421 agaagttgaaccacaatgtagccacatgttgtgatgct 458 | |||||| | ||||||||||||||||| |||||||| Sbjct: 134742 aaaagttgtatgacaatgtagccacatgtcgtgatgct 134705 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 457 cttccaaagcatatcaacaagcatatcca 485 |||||||||||||| |||||||||||||| Sbjct: 134035 cttccaaagcatattaacaagcatatcca 134007 Score = 40.1 bits (20), Expect = 6.8 Identities = 53/62 (85%), Gaps = 4/62 (6%) Strand = Plus / Minus Query: 198 attattgtgtaccaagaa---cataccccttcaatgag-ttttcagatcttcctacattt 253 |||||||| ||||||||| |||| | ||||||||| |||||| |||||||||||||| Sbjct: 134967 attattgtataccaagaataacataactcttcaatgatattttcaaatcttcctacattt 134908 Query: 254 ca 255 || Sbjct: 134907 ca 134906
>gb|AC020599.4|AC020599 Homo sapiens BAC clone RP11-440L13 from 4, complete sequence Length = 173821 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Plus Query: 19 tggtgtctatcatttgccaagca 41 ||||||||||||||||||||||| Sbjct: 163069 tggtgtctatcatttgccaagca 163091
>emb|AL731777.11| Human DNA sequence from clone RP11-482L14 on chromosome 6 Contains a cytochrome c (HCS) pseudogene, complete sequence Length = 130110 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 aagaaaaaacttctattgcta 152 ||||||||||||||||||||| Sbjct: 111369 aagaaaaaacttctattgcta 111389
>gb|AC005832.1| Homo sapiens 12 BAC RPCI11-500M8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 188948 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaacttctattgctactctgg 158 ||||||||||||||||||||| Sbjct: 64014 aaacttctattgctactctgg 64034
>gb|AC010577.5| Drosophila melanogaster clone BACR22J20, complete sequence Length = 152661 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 aagcaattaaatttggtatacaat 60 |||||||| ||||||||||||||| Sbjct: 85021 aagcaatttaatttggtatacaat 85044
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 ccaaagcatatcaacaagca 479 |||||||||||||||||||| Sbjct: 60337 ccaaagcatatcaacaagca 60318
>gb|AY150810.1| Cloning vector pRS327, complete sequence Length = 9560 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2419 ccaagcaattaaatttggta 2400
>gb|AY150809.1| Cloning vector pRS317, complete sequence Length = 8601 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2270 ccaagcaattaaatttggta 2251
>gb|AY150808.1| Cloning vector pRS307, complete sequence Length = 8219 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2419 ccaagcaattaaatttggta 2400
>gb|AC012626.10| Homo sapiens chromosome 16 clone CTD-2118O12, complete sequence Length = 149370 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 acattattgtgtaccaagaa 215 |||||||||||||||||||| Sbjct: 62703 acattattgtgtaccaagaa 62722
>gb|AY157309.1| Cloning vector YDp-K, complete sequence Length = 7877 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2482 ccaagcaattaaatttggta 2463
>emb|AL158195.11| Human DNA sequence from clone RP11-48H1 on chromosome 13 Contains part of the DLEU1 gene for deleted in lymphocytic leukemia 1 (BCMS LEU1), complete sequence Length = 123209 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tgccacataaatgattgtat 285 |||||||||||||||||||| Sbjct: 36810 tgccacataaatgattgtat 36791
>gb|AD001531.1|SYNPGR8V Cloning vector pGR8, complete sequence Length = 9655 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 4850 ccaagcaattaaatttggta 4869
>emb|Z35984.1|SCYBR115C S.cerevisiae chromosome II reading frame ORF YBR115c Length = 4584 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 1833 ccaagcaattaaatttggta 1814
>emb|X78993.1|SCRACII S.cerevisiae genomic DNA 70kb region of the right arm of chromosome II Length = 69748 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 51676 ccaagcaattaaatttggta 51657
>gb|AC092940.6| Homo sapiens 3 BAC RP11-128L14 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164805 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ctttgagacaataacaagtgaagg 95 ||||| |||||||||||||||||| Sbjct: 37597 ctttgtgacaataacaagtgaagg 37574
>gb|AC090741.5| Homo sapiens chromosome 8, clone RP11-677P13, complete sequence Length = 119956 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tacaattacaaaaccagctt 74 |||||||||||||||||||| Sbjct: 102474 tacaattacaaaaccagctt 102493
>dbj|AP006716.1| Staphylococcus haemolyticus JCSC1435 DNA, complete genome Length = 2685015 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 34 gccaagcaattaaatttggt 53 |||||||||||||||||||| Sbjct: 2417902 gccaagcaattaaatttggt 2417883
>gb|AC100802.2| Homo sapiens chromosome 8, clone CTB-2109K7, complete sequence Length = 203506 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 55 tacaattacaaaaccagctt 74 |||||||||||||||||||| Sbjct: 123130 tacaattacaaaaccagctt 123149
>gb|AF440620.1|AF440620 Homo sapiens 13q14 chronic lymphocytic leukemia suppressor locus section 2 of 2 Length = 440917 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 tgccacataaatgattgtat 285 |||||||||||||||||||| Sbjct: 115519 tgccacataaatgattgtat 115500
>gb|AC097627.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0079B22, from chromosome 3, complete sequence Length = 125217 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 460 ccaaagcatatcaacaagca 479 |||||||||||||||||||| Sbjct: 64881 ccaaagcatatcaacaagca 64900
>gb|AC162390.6| Mus musculus 6 BAC RP23-233J7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 229971 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 tatcaacaagcatatccata 487 |||||||||||||||||||| Sbjct: 66431 tatcaacaagcatatccata 66450
>ref|NM_003747.2| Homo sapiens tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase (TNKS), mRNA Length = 9599 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttacaaaaccagctttgaga 79 |||||||||||||||||||| Sbjct: 8933 ttacaaaaccagctttgaga 8952
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 aagcaattaaatttggtata 56 |||||||||||||||||||| Sbjct: 962490 aagcaattaaatttggtata 962509
>gb|AC024259.17| Homo sapiens chromosome 7 clone RP11-105B19, complete sequence Length = 177303 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 atgaacataggtgacattat 202 |||||||||||||||||||| Sbjct: 132960 atgaacataggtgacattat 132979
>gb|AC005949.12| Homo sapiens chromosome 13 clone 468p13 map 13q14, complete sequence Length = 143107 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgccacataaatgattgtat 285 |||||||||||||||||||| Sbjct: 104275 tgccacataaatgattgtat 104294
>gb|AC005948.14| Homo sapiens chromosome 13 clone 460f10 map 13q14, complete sequence Length = 154065 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tgccacataaatgattgtat 285 |||||||||||||||||||| Sbjct: 54432 tgccacataaatgattgtat 54451
>gb|AC040173.5| Homo sapiens chromosome 16 clone RP11-65J21, complete sequence Length = 192971 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 acattattgtgtaccaagaa 215 |||||||||||||||||||| Sbjct: 150732 acattattgtgtaccaagaa 150751
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 460 ccaaagcatatcaacaagca 479 |||||||||||||||||||| Sbjct: 60337 ccaaagcatatcaacaagca 60318
>emb|BX822332.1|CNS0A62Z Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB29ZH10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1287 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 tgagacaataacaagtgaag 94 |||||||||||||||||||| Sbjct: 1267 tgagacaataacaagtgaag 1248
>gb|M36287.1|YSCLYS2A Saccharomyces cerevisiae alpha-aminoadipate reductase (LYS2) gene, complete cds Length = 4980 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2773 ccaagcaattaaatttggta 2792
>gb|AC104052.9| Homo sapiens chromosome 8, clone CTD-2358M3, complete sequence Length = 90940 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 60 ttacaaaaccagctttgaga 79 |||||||||||||||||||| Sbjct: 11376 ttacaaaaccagctttgaga 11357
>gb|AC092615.3| Homo sapiens BAC clone RP11-204D19 from 2, complete sequence Length = 180346 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 aaaaaggggaaaaatctggt 22 |||||||||||||||||||| Sbjct: 30663 aaaaaggggaaaaatctggt 30682
>gb|AC055869.13| Homo sapiens chromosome 8, clone RP11-403C10, complete sequence Length = 182023 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttacaaaaccagctttgaga 79 |||||||||||||||||||| Sbjct: 5800 ttacaaaaccagctttgaga 5819
>gb|AE003846.5| Drosophila melanogaster chromosome 4, section 5 of 5 of the complete sequence Length = 356494 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 37 aagcaattaaatttggtatacaat 60 |||||||| ||||||||||||||| Sbjct: 198050 aagcaatttaatttggtatacaat 198027
>dbj|AP001977.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-248G21, complete sequences Length = 156957 Score = 40.1 bits (20), Expect = 6.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tgagttttcagatcttcctacatt 252 ||||||||||| |||||||||||| Sbjct: 102983 tgagttttcagctcttcctacatt 103006
>gb|DQ331957.1| Synthetic construct Saccharomyces cerevisiae clone FLH203041.01X LYS2 gene, complete sequence Length = 4179 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ccaagcaattaaatttggta 54 |||||||||||||||||||| Sbjct: 2477 ccaagcaattaaatttggta 2496
>gb|AF082557.1|AF082557 Homo sapiens TRF1-interacting ankyrin-related ADP-ribose polymerase mRNA, partial cds Length = 8901 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttacaaaaccagctttgaga 79 |||||||||||||||||||| Sbjct: 8229 ttacaaaaccagctttgaga 8248
>gb|AF070613.1|AF070613 Homo sapiens clone 24585 mRNA sequence Length = 1654 Score = 40.1 bits (20), Expect = 6.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 60 ttacaaaaccagctttgaga 79 |||||||||||||||||||| Sbjct: 967 ttacaaaaccagctttgaga 986 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,931,144 Number of Sequences: 3902068 Number of extensions: 4931144 Number of successful extensions: 100908 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 100691 Number of HSP's gapped (non-prelim): 217 length of query: 500 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 478 effective length of database: 17,147,199,772 effective search space: 8196361491016 effective search space used: 8196361491016 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)