Clone Information

BLAST Search Result

Clone Name	rbart32e11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor	34	0.21
2	CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Letha...	33	0.61
3	JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)	32	1.0
4	CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor	32	1.4
5	CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor	32	1.4
6	CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag...	32	1.4
7	JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)	31	1.8
8	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	31	1.8
9	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	31	1.8
10	SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)	31	1.8
11	US6NL_MOUSE (Q80XC3) USP6 N-terminal-like protein	31	2.3
12	CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor	31	2.3
13	CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor	30	3.0
14	MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substra...	30	3.0
15	CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor	30	4.0
16	COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor	30	4.0
17	VGLD_BHV1S (Q08100) Glycoprotein D precursor (Glycoprotein IV)	30	4.0
18	VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV)	30	4.0
19	COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor	30	4.0
20	MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substra...	30	4.0
21	ZSWM5_MOUSE (Q80TC6) Zinc finger SWIM domain-containing protein 5	30	5.2
22	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	30	5.2
23	PKP3_MOUSE (Q9QY23) Plakophilin-3	30	5.2
24	Y756_AQUAE (O66958) UPF0128 protein aq_756	30	5.2
25	ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (V...	29	6.8
26	CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor	29	6.8
27	POLG_HRV2 (P04936) Genome polyprotein [Contains: Coat protein VP...	29	6.8
28	CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor	29	6.8
29	ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)	29	6.8
30	COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor	29	6.8
31	CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor	29	6.8
32	PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1...	29	6.8
33	CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragm...	29	6.8
34	CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor	29	8.9
35	CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor	29	8.9
36	NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)	29	8.9
37	C1QC_RAT (P31722) Complement C1q subcomponent subunit C precursor	29	8.9
38	CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor	29	8.9
39	CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragme...	29	8.9
40	CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor	29	8.9
41	C1QC_MOUSE (Q02105) Complement C1q subcomponent subunit C precursor	29	8.9
42	AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A...	29	8.9
43	CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor	29	8.9

>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           G+  ++   G+  +DGE GP    G   PG Q  R     AGP+GD
Sbjct: 475 GIVGDKGEKGARGLDGEPGPQGLPG--APGDQGQRGPPGEAGPKGD 518

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>CO4A2_CAEEL (P17140) Collagen alpha-2(IV) chain precursor (Lethal protein 2)|
          Length = 1758

 Score = 32.7 bits (73), Expect = 0.61
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEG 384
           G   E+  GG   + G  GP  R+G   PG + DR     AGP G
Sbjct: 164 GAPGEKGDGGMPGMPGLPGPSGRDG--YPGEKGDRGDTGNAGPRG 206

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>JPH4_HUMAN (Q96JJ6) Junctophilin-4 (Junctophilin-like 1 protein)|
          Length = 628

 Score = 32.0 bits (71), Expect = 1.0
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVD-GEQGPGAREGERVPGGQADRATGARAGPEGD 381
           G Q EE AG  A  + G QGPG R+G  + GG +D ++G+    EG+
Sbjct: 503 GAQAEELAGYEAEDEAGMQGPGPRDGSPLLGGCSD-SSGSLREEEGE 548

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>CO1A2_CANFA (O46392) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGERVPGGQADRATGARAGPEG 384
           GSA   G  GP   EG+R P G+A       AGP G
Sbjct: 364 GSAGAQGPPGPSGEEGKRGPNGEA-----GSAGPSG 394

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>CO1A2_ONCMY (O93484) Collagen alpha-2(I) chain precursor|
          Length = 1356

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGER----VPGGQADRATGARAGPEGDV 378
           G + E  + G     G QGPG   GER     PG + ++  G   G EG++
Sbjct: 613 GGKGEPGSVGIVGAAGHQGPGGMPGERGAGGTPGPKGEKGEGGHRGLEGNM 663

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>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEG 384
           G+  E  A GS    G++G PG +  + +PG + +R      GP G
Sbjct: 725 GMPGERGASGSPGPKGDKGEPGGKGADGLPGARGERGNVGPIGPPG 770

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>JPH4_MOUSE (Q80WT0) Junctophilin-4 (Junctophilin-like 1 protein)|
          Length = 628

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVD-GEQGPGAREGERVPGGQADRATGARAGPEGD 381
           G Q EE AG  A  + G QGPG R+G  + GG +D ++G+    EG+
Sbjct: 503 GEQAEELAGYEAEDEAGVQGPGPRDGSPLLGGCSD-SSGSLREEEGE 548

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAREGERVPGGQAD 417
           AAGG A V G+ GPGA      PG +A+
Sbjct: 318 AAGGPAGVSGQPGPGAAAAAPAPGVKAE 345

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 518  GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
            G + E+ A G  A D    PGA+    +PG + ++    RAG  GD
Sbjct: 2307 GAKGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGD 2352

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>SPD2_NEPCL (P46804) Spidroin 2 (Dragline silk fibroin 2) (Fragment)|
          Length = 627

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGA----REGERVPGGQADRATGARAGPEG 384
           +A  +AA  G+QGPG     ++G   PG  +  A  A AGP G
Sbjct: 353 SAAAAAAGPGQQGPGGYGPGQQGPSGPGSASAAAAAAAAGPGG 395



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGA----REGERVPGGQADRATGARAGPEG 384
           AAG      G+QGPG     ++G   PG  +  A  A AGP G
Sbjct: 390 AAGPGGYGPGQQGPGGYAPGQQGPSGPGSASAAAAAAAAGPGG 432



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGA-REGERVPG--GQADRATGARAGPEG 384
           AA  +AA  G+QGPG    G++ P   G A  A  A AGP G
Sbjct: 246 AAAAAAAGPGQQGPGGYGPGQQGPSGPGSAAAAAAAAAGPGG 287



 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAR-EGERVPGGQADRATGARAGP 390
           AAG      G+QGPG    G++ P G    A  A AGP
Sbjct: 282 AAGPGGYGPGQQGPGGYGPGQQGPSGAGSAAAAAAAGP 319

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>US6NL_MOUSE (Q80XC3) USP6 N-terminal-like protein|
          Length = 819

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 476 DGEQGPGAREGERVPGGQADRATGARAGPE 387
           +G++G  A + + VPGG+++    A  GPE
Sbjct: 539 EGKRGSNASQYDNVPGGESEHGASAEEGPE 568

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>CO6A1_MOUSE (Q04857) Collagen alpha-1(VI) chain precursor|
          Length = 1025

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -1

Query: 509 EEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           +E  AG   A     GPG R     PG +  R     AGP+GD
Sbjct: 410 DEGNAGPDGAPGERGGPGERGPRGTPGVRGPRGDPGEAGPQGD 452



 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGER-VPGGQADRATGARAGPEGD 381
           G A  +G  GP    GER  PG +  R T    GP GD
Sbjct: 406 GEAGDEGNAGPDGAPGERGGPGERGPRGTPGVRGPRGD 443

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>CO1A2_HUMAN (P08123) Collagen alpha-2(I) chain precursor|
          Length = 1366

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGERVPGGQADRATGARAGPEG 384
           GSA   G  GP   EG+R P G+A       AGP G
Sbjct: 364 GSAGPQGPPGPSGEEGKRGPNGEA-----GSAGPPG 394

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>MARCS_BOVIN (P12624) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (ACAMP-81)
          Length = 331

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 509 EEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           ++EA+GG+AA  GE G    E    PG +A  A G      GD
Sbjct: 194 KDEASGGAAAAAGEAGAAPGEPTAAPGEEA--AAGEEGAAGGD 234

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>CO6A1_HUMAN (P12109) Collagen alpha-1(VI) chain precursor|
          Length = 1028

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -1

Query: 506 EEAAGGSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEGD 381
           +E   G     GE+G PG R     PG +  R     AGP+GD
Sbjct: 411 DEGNPGPDGAPGERGGPGERGPRGTPGPRGPRGDPGEAGPQGD 453



 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGER-VPGGQADRATGARAGPEGD 381
           G A  +G  GP    GER  PG +  R T    GP GD
Sbjct: 407 GEAGDEGNPGPDGAPGERGGPGERGPRGTPGPRGPRGD 444

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>COCA1_MOUSE (Q60847) Collagen alpha-1(XII) chain precursor|
          Length = 3119

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
 Frame = -1

Query: 491  GSAAVDGEQGPGAR------------EGER-VPGGQADRATGARAGPEG 384
            GSA   GE GPG R             GER +PG + +R TG++ GP G
Sbjct: 2952 GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGSQ-GPRG 2999

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>VGLD_BHV1S (Q08100) Glycoprotein D precursor (Glycoprotein IV)|
          Length = 417

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           A GGS A  G+      EGE   G       G   GPEGD
Sbjct: 270 ADGGSPAPPGDDEAREDEGETEDGAAGREGNGGPPGPEGD 309

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>VGLD_BHV1P (P24906) Glycoprotein D precursor (Glycoprotein IV)|
          Length = 417

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           A GGS A  G+      EGE   G       G   GPEGD
Sbjct: 270 ADGGSPAPPGDDEAREDEGETEDGAAGREGNGGPPGPEGD 309

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>COCA1_HUMAN (Q99715) Collagen alpha-1(XII) chain precursor|
          Length = 3063

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 13/49 (26%)
 Frame = -1

Query: 491  GSAAVDGEQGPGAR------------EGER-VPGGQADRATGARAGPEG 384
            GSA   GE GPG R             GER +PG + +R TG+ +GP G
Sbjct: 2951 GSAGARGEPGPGGRPGFPGTPGMQGPPGERGLPGEKGERGTGS-SGPRG 2998

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>MARCS_HUMAN (P29966) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
           (Protein kinase C substrate, 80 kDa protein, light
           chain) (PKCSL) (80K-L protein)
          Length = 331

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 509 EEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           ++EAAGG+AA   E G  + E    PG +A  A G      GD
Sbjct: 192 KDEAAGGAAAAAAEAGAASGEQAAAPGEEA--AAGEEGAAGGD 232

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>ZSWM5_MOUSE (Q80TC6) Zinc finger SWIM domain-containing protein 5|
          Length = 1188

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGP 390
           AAG + A   E+GP    G   P G A  A GA + P
Sbjct: 126 AAGAAGASPVEEGPPPPPGAAAPAGSAPGAAGAGSSP 162

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEG 384
           G   E+   G   + G  GP  R+G   PG + DR    +AGP G
Sbjct: 165 GAPGEKGDAGMPGMPGLPGPPGRDG--FPGEKGDRGDVGQAGPRG 207

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>PKP3_MOUSE (Q9QY23) Plakophilin-3|
          Length = 797

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +3

Query: 411 SPISLATRDALSLTCSRSLLSVHS 482
           SP S ++R A+ LTCSR L S H+
Sbjct: 115 SPASWSSRSAVDLTCSRRLSSAHN 138

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>Y756_AQUAE (O66958) UPF0128 protein aq_756|
          Length = 229

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = -3

Query: 153 QDTRMRWGFDLGVGQPGLVRGFYVGAAG 70
           QD R RWGFDL +G+   VR F+   AG
Sbjct: 32  QDLR-RWGFDLILGKKNGVRTFFASQAG 58

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>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/36 (41%), Positives = 15/36 (41%)
 Frame = -1

Query: 497 AGGSAAVDGEQGPGAREGERVPGGQADRATGARAGP 390
           A GS     E GPG   G   PG     A GA A P
Sbjct: 477 ARGSGGPGAEGGPGVPRGTNTPGAAPHAAEGAAARP 512

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>CO5A3_HUMAN (P25940) Collagen alpha-3(V) chain precursor|
          Length = 1745

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGDV 378
           G   ++GE+GP    GER   G    ATG + GP+GDV
Sbjct: 824 GQPGLEGERGPPGSRGERGQPG----ATG-QPGPKGDV 856

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>POLG_HRV2 (P04936) Genome polyprotein [Contains: Coat protein VP4 (P1A); Coat|
            protein VP2 (P1B); Coat protein VP3 (P1C); Coat protein
            VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein
            P2A); Core protein P2B; Core protein P2C; Core protein
            P3A; Genome-
          Length = 2149

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 357  CGAKLSPNISLRTCPGSCSPISLATRDA-LSLTCSRSLLSVHSRRATCS 500
            C  KL P++     PGS  P  L+ +DA L +  + +L S +     CS
Sbjct: 1710 CKTKLQPSVFYDVFPGSKEPAVLSEKDARLQVDFNEALFSKYKGNTDCS 1758

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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           G+   +   G+  +DG  GP    G   PGGQ  R      GP+G+
Sbjct: 473 GITGPKGNKGARGLDGGPGPQGLPG--APGGQGQRGPVGEEGPKGE 516

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>ATRN_HUMAN (O75882) Attractin precursor (Mahogany homolog) (DPPT-L)|
          Length = 1429

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -1

Query: 509 EEEAAGGSAAVDGEQGPGAREGER--VPGGQADRATGARAGPEG 384
           E EAA  +AAV G     A+E +R  V GG+ +  TG    P G
Sbjct: 80  EAEAAAAAAAVSGSAAAEAKECDRPCVNGGRCNPGTGQCVCPAG 123

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>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 518  GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
            G++ E    GSA   GE GP   EG  +PG           GP+G+
Sbjct: 1101 GIKGERGYTGSAGEKGEPGPPGSEG--LPGPPGPAGPRGERGPQGN 1144

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>CO9A2_HUMAN (Q14055) Collagen alpha-2(IX) chain precursor|
          Length = 689

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREG-------ERVPGGQADRATGARAGPEGDV 378
           G Q E    G     G QGP   +G       + +PG + D+ +  + GP G V
Sbjct: 388 GDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGVKGDKGSPGKTGPRGKV 441

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>PO4F1_MOUSE (P17208) POU domain, class 4, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 3A) (Brn-3A)
           (Brn-3.0)
          Length = 421

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/39 (41%), Positives = 16/39 (41%)
 Frame = -1

Query: 500 AAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEG 384
           A GG  A DG  G G   G   PGG      G   GP G
Sbjct: 137 AGGGGGAHDGPGGGGGPGGGGGPGGGGPGGGGGGGGPGG 175

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>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 29.3 bits (64), Expect = 6.8
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGERVPGGQADRATGARAGPEGD 381
           G Q  +   G A V G  GP   EG+R  G + +      AGP G+
Sbjct: 280 GEQGPKGEPGPAGVQGAPGPAGEEGKR--GARGEPGGAGPAGPPGE 323

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>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREG-------ERVPGGQADRATGARAGPEGDV 378
           G Q E    G     G QGP   +G       + +PG + D+ +  + GP G V
Sbjct: 387 GDQGERGPVGQPGPQGRQGPKGEQGPPGIPGPQGLPGIKGDKGSPGKTGPRGGV 440

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>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGER----VPGGQADRATGARAGPEGD 381
           G + E  A G+    G  GPG   GER    +PGG+ ++      G  G+
Sbjct: 625 GNKGEAGAVGAPGSAGASGPGGLPGERGAAGIPGGKGEKGETGLRGDTGN 674

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>NPBL_COPCI (Q00333) Protein rad9 (SCC2 homolog)|
          Length = 2157

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 85   VETAHQTGLPYTKIKPPTHARVLIPYGKSEQATPQ 189
            + T H     Y  I P THA  L+PY K+   T +
Sbjct: 1449 IRTIHLFTAAYPSILPGTHASTLLPYLKNASTTEE 1483

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>C1QC_RAT (P31722) Complement C1q subcomponent subunit C precursor|
          Length = 245

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGE-RVPGGQADRATGARAGPEGD 381
           GLQ  +   G  A+ G QGP  ++GE  +PG +        +G  GD
Sbjct: 52  GLQGPKGEPGIPAIPGTQGPKGQKGEPGMPGHRGKNGPMGTSGSPGD 98

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>CO3A1_MOUSE (P08121) Collagen alpha-1(III) chain precursor|
          Length = 1464

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEG 384
           G+  E    GS    GE+G PG    + VPG    R      GP G
Sbjct: 725 GMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPG 770

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>CO1A2_CHICK (P02467) Collagen alpha-2(I) chain precursor (Fragments)|
          Length = 1362

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = -1

Query: 491 GSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEG 384
           G+   DG +G PGA       GG  DR  G  AGP G
Sbjct: 665 GATGRDGARGLPGAIGAPGPAGGAGDRGEGGPAGPAG 701

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>CO9A1_MOUSE (Q05722) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEGDV 378
           G+Q      GS    G+ G PG    + +PG    +    + GP GDV
Sbjct: 520 GIQGSRGIPGSPGPKGDTGLPGVDGRDGIPGMPGTKGEAGKPGPPGDV 567

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>C1QC_MOUSE (Q02105) Complement C1q subcomponent subunit C precursor|
          Length = 246

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQGPGAREGE-RVPGGQADRATGARAGPEGD 381
           GLQ  +   G  AV G QGP  ++GE  +PG +        +G  GD
Sbjct: 53  GLQGPKGEPGIPAVPGTQGPKGQKGEPGMPGHRGKNGPRGTSGLPGD 99

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>AKAP2_HUMAN (Q9Y2D5) A-kinase anchor protein 2 (Protein kinase A-anchoring|
           protein 2) (PRKA2) (AKAP-2)
          Length = 1103

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 491 GSAAVDGEQGPGAREGERVPGGQADRATGARAGP 390
           G++A  G++ PGA E     G Q + A+  + GP
Sbjct: 615 GASAAKGQKSPGALETPSAAGSQGNTASQGKEGP 648

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>CO3A1_RAT (P13941) Collagen alpha-1(III) chain precursor|
          Length = 1463

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
 Frame = -1

Query: 518 GLQEEEAAGGSAAVDGEQG-PGAREGERVPGGQADRATGARAGPEG 384
           G+  E    GS    GE+G PG    + VPG    R      GP G
Sbjct: 725 GMPGERGGPGSPGPKGEKGEPGGAGADGVPGKDGPRGPAGPIGPPG 770


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,676,372
Number of Sequences: 219361
Number of extensions: 1296600
Number of successful extensions: 4887
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 4013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4838
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result