ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32e10 |
|---|---|
| Clone Library Name | barley_pub |
>NEP1_NEPGR (Q766C3) Aspartic proteinase nepenthesin-1 precursor (EC 3.4.23.-)| (Nepenthesin-I) Length = 437 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%) Frame = -1 Query: 455 LDLPAENYMVLDSGSGALCLTV-MGSRGLSXXXXXXXXXXXFVYDVGENTLSFAPVQC 285 L+LP+ENY + S +G +CL + S+G+S VYD G + +SFA QC Sbjct: 378 LELPSENYFISPS-NGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
>SPIKE_FIPV (P10033) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1452 Score = 34.7 bits (78), Expect = 0.12 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 14/68 (20%) Frame = +1 Query: 166 TPWHMNTACMHARIDTPTTNPST----------TYWRYNTGTHVRTHNLA----HCTGAK 303 T W N +++R T T S TY++ N ++T+ L HCTG Sbjct: 203 TNWFNNVTLLYSRSSTATWEYSAAYAYQGVSNFTYYKLNNTNGLKTYELCEDYEHCTGYA 262 Query: 304 ERVFSPTS 327 VF+PTS Sbjct: 263 TNVFAPTS 270
>SPIKE_CVCAI (P36300) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1451 Score = 30.0 bits (66), Expect = 2.9 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 14/66 (21%) Frame = +1 Query: 172 WHMNTACMHARIDTPTTNPST----------TYWRYNTGTHVRTHNLA----HCTGAKER 309 W N +++R T T S TY++ N ++++ L +CTG Sbjct: 206 WFNNVTLLYSRTSTATWQHSAAYVYQGVSNFTYYKLNKTAGLKSYELCEDYEYCTGYATN 265 Query: 310 VFSPTS 327 VF+PTS Sbjct: 266 VFAPTS 271
>IF35_MOUSE (Q9DCH4) Eukaryotic translation initiation factor 3 subunit 5| (eIF-3 epsilon) (eIF3 p47 subunit) (eIF3f) Length = 361 Score = 30.0 bits (66), Expect = 2.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +2 Query: 377 PATPSPSGTARRTRSPAPCSSPPA 448 P+TP+P+ A SPAP SS PA Sbjct: 33 PSTPAPTPAATPAASPAPVSSDPA 56
>HERC2_HUMAN (O95714) HECT domain and RCC1-like domain-containing protein 2| Length = 4834 Score = 29.6 bits (65), Expect = 3.8 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = -1 Query: 248 YRQYVVDGLVVGVSIRACMHAVFICHGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 69 Y YV + + VG+ +R C +C G G+V + L R G + + W + Sbjct: 2563 YAVYVRENIQVGMMVRCCRAYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2615 Query: 68 GHGWMIRWIRV 36 G W +R+I V Sbjct: 2616 GTYW-VRYIHV 2625
>AURB_CHLAU (P27197) Auracyanin B precursor (Ac-B) [Contains: Auracyanin B-1;| Auracyanin B-2] Length = 235 Score = 29.6 bits (65), Expect = 3.8 Identities = 14/25 (56%), Positives = 17/25 (68%) Frame = +2 Query: 380 ATPSPSGTARRTRSPAPCSSPPAGQ 454 ATP P+ T R T +PAP + PPA Q Sbjct: 64 ATPRPTATPRPTAAPAP-TQPPAAQ 87
>HERC2_MOUSE (Q4U2R1) HECT domain and RCC1-like domain-containing protein 2| Length = 4836 Score = 29.3 bits (64), Expect = 4.9 Identities = 20/71 (28%), Positives = 32/71 (45%) Frame = -1 Query: 248 YRQYVVDGLVVGVSIRACMHAVFICHGVRGRVDQLRACYV*LARLGRYSTCMDGSWNYRI 69 Y YV + + VG+ +R C +C G G+V + L R G + + W + Sbjct: 2564 YAVYVRENVQVGMMVRCCRTYEEVCEGDVGKV-------IKLDRDGLHDLNVQCDWQQKG 2616 Query: 68 GHGWMIRWIRV 36 G W +R+I V Sbjct: 2617 GTYW-VRYIHV 2626
>SPIKE_CVCAE (Q65984) Spike glycoprotein precursor (Peplomer protein) (E2)| Length = 1453 Score = 28.9 bits (63), Expect = 6.4 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 23/79 (29%) Frame = +1 Query: 172 WHMNTACMHARIDTPTTNPST----------TYWRYNTGTHVRTHNLA----HCTGAKER 309 W N +++R + T S TY++ N ++++ L +CTG Sbjct: 206 WFNNVTILYSRSSSATWQKSAAYVYQGVSNFTYYKLNNTNGLKSYELCEDYEYCTGYATN 265 Query: 310 VFSPT---------SYTNW 339 VF+PT S+ NW Sbjct: 266 VFAPTVGGYIPHGFSFNNW 284
>GUNA_MICBI (P26414) Endoglucanase A precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase) (Cellulase) Length = 456 Score = 28.5 bits (62), Expect = 8.4 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Frame = +2 Query: 377 PATPSPSGTARRTRSPAPC-SSPPAGQ 454 P+TPSPS + SP+P S PPAG+ Sbjct: 332 PSTPSPSPSQSDPGSPSPSPSQPPAGR 358
>NK3R_CAVPO (P30098) Neuromedin K receptor (NKR) (Neurokinin B receptor) (NK-3| receptor) (NK-3R) (Tachykinin receptor 3) Length = 440 Score = 28.5 bits (62), Expect = 8.4 Identities = 13/31 (41%), Positives = 16/31 (51%) Frame = +2 Query: 350 AGSCR*WTGPATPSPSGTARRTRSPAPCSSP 442 AG+ W G P P+ T SPAP +SP Sbjct: 5 AGNLSAWPGWGWPPPAALRNLTSSPAPTASP 35
>LYTH_STAHJ (Q4L6X7) Probable cell-wall amidase lytH precursor (EC 3.5.1.-)| Length = 291 Score = 28.5 bits (62), Expect = 8.4 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Frame = +1 Query: 205 IDTPTTNPSTTYWRYNT--------GTHVRTHNLAHCTGAKERVFSPTSYTNWMFCCWKL 360 +D+P N +T YW N T+++ + G ++ F TN +L Sbjct: 197 LDSPNANGATVYWYKNNQEALAETLNTNIQKKAMLFNRGTRQENFQVLRQTNKPAVLLEL 256 Query: 361 PMMDRPRDPITVRH 402 + P D + +R+ Sbjct: 257 GYISNPTDEVMIRN 270
>CEZ2_MOUSE (Q8R554) Zinc finger A20 domain-containing protein ? (EC 3.-.-.-)| (Zinc finger protein Cezanne 2) (OTU domain-containing protein 7) Length = 926 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 4/29 (13%) Frame = +2 Query: 374 GPATPSPSGTARR----TRSPAPCSSPPA 448 G A+P P G ARR T P P SPPA Sbjct: 746 GAASPGPGGGARRAAPGTGGPTPGRSPPA 774 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,265,507 Number of Sequences: 219361 Number of extensions: 1523513 Number of successful extensions: 5398 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 4872 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5376 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
