ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32e09 |
|---|---|
| Clone Library Name | barley_pub |
>RS3A_ORYSA (P49397) 40S ribosomal protein S3a (CYC07 protein)| Length = 261 Score = 125 bits (315), Expect = 4e-29 Identities = 66/79 (83%), Positives = 71/79 (89%), Gaps = 1/79 (1%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDY-KEDVGVKL 301 V+KFIPEVIGKEIEKATSSIFPLQNV+ RKVKILKAPKFDLGKLMEVHGDY KED+G KL Sbjct: 184 VSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKL 243 Query: 300 DRPDGDEVIPGAEEVAAAE 244 DRP DE + G +EVAAAE Sbjct: 244 DRPAEDEAMAG-QEVAAAE 261
>RS3A_HELAN (P49198) 40S ribosomal protein S3a| Length = 259 Score = 118 bits (296), Expect = 7e-27 Identities = 60/77 (77%), Positives = 65/77 (84%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKLD 298 V KFIPE IG+EIEKATSSI+PLQNV+ RKVKILKAPKFD+GKLMEVHGDY EDVGVKLD Sbjct: 184 VQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLD 243 Query: 297 RPDGDEVIPGAEEVAAA 247 RP +E P A EV A Sbjct: 244 RP-AEEAAPEATEVIGA 259
>RS3A_CATRO (P33444) 40S ribosomal protein S3a (CYC07 protein)| Length = 259 Score = 114 bits (286), Expect = 1e-25 Identities = 56/76 (73%), Positives = 62/76 (81%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKLD 298 V KFIPE IG+EIEKATSSI+PLQNV+ RKVKILKAPKFDLGKLMEVHGDY ED+G KLD Sbjct: 184 VQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDIGTKLD 243 Query: 297 RPDGDEVIPGAEEVAA 250 RP + V E + A Sbjct: 244 RPAEEAVAEPTEVIGA 259
>RS3A_ARATH (Q42262) 40S ribosomal protein S3a| Length = 261 Score = 107 bits (268), Expect = 1e-23 Identities = 54/78 (69%), Positives = 62/78 (79%), Gaps = 1/78 (1%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDY-KEDVGVKL 301 V KFIPE IG+EIEKAT I+PLQNV+ RKVKILKAPKFDLGKLMEVHGDY EDVGVK+ Sbjct: 184 VAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKV 243 Query: 300 DRPDGDEVIPGAEEVAAA 247 DRP + ++ E+ A Sbjct: 244 DRPADETMVEEPTEIIGA 261
>RS3A_BRARA (P49396) 40S ribosomal protein S3a (S phase-specific protein| BIS289) Length = 261 Score = 105 bits (262), Expect = 6e-23 Identities = 56/78 (71%), Positives = 62/78 (79%), Gaps = 1/78 (1%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDY-KEDVGVKL 301 V KFIPE IGK+IEKAT I+PLQNV+ RKVKILKAPKFDL KLMEVHGDY EDVGVK+ Sbjct: 185 VAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKV 244 Query: 300 DRPDGDEVIPGAEEVAAA 247 DRP DEV+ E+ A Sbjct: 245 DRP-ADEVVEEPTEIIGA 261
>RS3A_TORRU (Q9XEG7) 40S ribosomal protein S3a| Length = 247 Score = 85.1 bits (209), Expect = 9e-17 Identities = 43/60 (71%), Positives = 50/60 (83%), Gaps = 1/60 (1%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSS-IFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 301 V KFIPEVIGKEI++ S I+PLQ+ + RKVKILKAPKFDL KLMEVHGDY E+VG K+ Sbjct: 181 VAKFIPEVIGKEIDEWRSQGIYPLQSTFIRKVKILKAPKFDLMKLMEVHGDYNEEVGAKI 240
>RS3A_TETNG (Q4T8S6) 40S ribosomal protein S3a| Length = 265 Score = 83.2 bits (204), Expect = 3e-16 Identities = 42/75 (56%), Positives = 53/75 (70%), Gaps = 9/75 (12%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD---------Y 325 VNK IP+ IGK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGTAAKAT 243 Query: 324 KEDVGVKLDRPDGDE 280 +D G K++R DG E Sbjct: 244 GDDTGAKVERADGYE 258
>RS3A_ORYLA (O73813) 40S ribosomal protein S3a (V-fos transformation effector| protein) Length = 265 Score = 82.8 bits (203), Expect = 4e-16 Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 9/75 (12%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD---------Y 325 VNK IP+ +GK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ Sbjct: 184 VNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGAGGAAKAS 243 Query: 324 KEDVGVKLDRPDGDE 280 +D G K++R DG E Sbjct: 244 GDDTGAKVERADGYE 258
>RS3A_XENTR (Q642T2) 40S ribosomal protein S3a| Length = 263 Score = 82.4 bits (202), Expect = 6e-16 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPAGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_XENLA (Q801S3) 40S ribosomal protein S3a| Length = 263 Score = 82.4 bits (202), Expect = 6e-16 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGTGKPAGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_OPHHA (Q98TX2) 40S ribosomal protein S3a| Length = 263 Score = 82.4 bits (202), Expect = 6e-16 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGSGKPSGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_EIMTE (O43999) 40S ribosomal protein S3a (EtS3a)| Length = 263 Score = 82.4 bits (202), Expect = 6e-16 Identities = 41/73 (56%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGGAGKPSGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 EAGAKVERADGYE 256
>RS3A_BRARE (Q6PBY1) 40S ribosomal protein S3a| Length = 266 Score = 82.0 bits (201), Expect = 7e-16 Identities = 41/76 (53%), Positives = 53/76 (69%), Gaps = 10/76 (13%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD---------- 328 VNK IP+ +GK+IEKA SI+PL +VY RKVK+LK PKF+LGKLME+HG+ Sbjct: 184 VNKLIPDSVGKDIEKACQSIYPLHDVYVRKVKMLKKPKFELGKLMELHGEGGSTSAAAKP 243 Query: 327 YKEDVGVKLDRPDGDE 280 + D G K++R DG E Sbjct: 244 AEGDTGAKVERADGYE 259
>RS3B_SCHPO (O94438) 40S ribosomal protein S3aE-B (S1-A)| Length = 251 Score = 81.6 bits (200), Expect = 1e-15 Identities = 41/59 (69%), Positives = 48/59 (81%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 301 V K IPEVIG+EIE+AT SIFPLQNV RKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 184 VQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELHGE-SQDVGTKV 241
>RS3A_FELCA (P61246) 40S ribosomal protein S3a (Fragment)| Length = 260 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYK-------E 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 181 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 240 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 241 ETGAKVERADGYE 253
>RS3A_MACFA (Q4R4Z6) 40S ribosomal protein S3a| Length = 263 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYK-------E 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_HUMAN (P61247) 40S ribosomal protein S3a| Length = 263 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYK-------E 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_BOVIN (Q56JV9) 40S ribosomal protein S3a| Length = 263 Score = 81.3 bits (199), Expect = 1e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYK-------E 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_RAT (P49242) 40S ribosomal protein S3a (V-fos transformation effector| protein) [Contains: 40S ribosomal protein S3b] Length = 263 Score = 80.9 bits (198), Expect = 2e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_MOUSE (P97351) 40S ribosomal protein S3a| Length = 263 Score = 80.9 bits (198), Expect = 2e-15 Identities = 40/73 (54%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-------YKE 319 VNK IP+ IGK+IEKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKAAGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_GECJA (Q6DV02) 40S ribosomal protein S3a| Length = 263 Score = 80.1 bits (196), Expect = 3e-15 Identities = 39/73 (53%), Positives = 53/73 (72%), Gaps = 7/73 (9%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYK-------E 319 VNK IP+ IGK++EKA SI+PL +V+ RKVK+LK PKF+LGKLME+HG+ + Sbjct: 184 VNKLIPDSIGKDMEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGD 243 Query: 318 DVGVKLDRPDGDE 280 + G K++R DG E Sbjct: 244 ETGAKVERADGYE 256
>RS3A_SCHPO (Q09781) 40S ribosomal protein S3aE-A (S1-A)| Length = 251 Score = 79.3 bits (194), Expect = 5e-15 Identities = 39/59 (66%), Positives = 49/59 (83%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKL 301 V K IPEVIG+ IEKAT++I+PLQNV+ RKVKILKAPK D KL+E+HG+ +DVG K+ Sbjct: 184 VQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELHGE-SQDVGSKV 241
>RS3A_CANAL (P40910) 40S ribosomal protein S3aE (S1)| Length = 255 Score = 74.7 bits (182), Expect = 1e-13 Identities = 38/68 (55%), Positives = 50/68 (73%), Gaps = 1/68 (1%) Frame = -3 Query: 474 NKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD-YKEDVGVKLD 298 +K IPEVIG+EIEK+T +IFPLQNV+ RKVK+LK PKFD G L+ +HG+ E+ G K+ Sbjct: 185 SKLIPEVIGREIEKSTQTIFPLQNVHIRKVKLLKQPKFDWGSLLALHGEGSTEEKGKKVS 244 Query: 297 RPDGDEVI 274 D V+ Sbjct: 245 SGFKDVVL 252
>RS3A_APLCA (P49395) 40S ribosomal protein S3a (Lysine-rich protein KRP-A)| Length = 264 Score = 74.3 bits (181), Expect = 2e-13 Identities = 38/74 (51%), Positives = 49/74 (66%), Gaps = 8/74 (10%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD--------YK 322 VNK IP+ IGK+IEK+ I+PL +V KVK+LK PKFD+GKLME+HG+ Sbjct: 184 VNKLIPDSIGKDIEKSCQGIYPLHDVLIHKVKVLKKPKFDVGKLMELHGEGSTTTSKGVT 243 Query: 321 EDVGVKLDRPDGDE 280 + G K+DR DG E Sbjct: 244 SEGGEKVDRVDGYE 257
>RS3A_CAEEL (P48154) 40S ribosomal protein S3a| Length = 256 Score = 73.9 bits (180), Expect = 2e-13 Identities = 38/68 (55%), Positives = 48/68 (70%), Gaps = 2/68 (2%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD--YKEDVGVK 304 V+K IP+ IGK+IEK S ++PLQ VY RKVKI+K PK DLG+L ++HGD G K Sbjct: 182 VSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLHGDSITVGADGEK 241 Query: 303 LDRPDGDE 280 +DRPD E Sbjct: 242 VDRPDDYE 249
>RS3B_YEAST (P23248) 40S ribosomal protein S1-B (RP10B)| Length = 254 Score = 73.6 bits (179), Expect = 3e-13 Identities = 33/49 (67%), Positives = 40/49 (81%) Frame = -3 Query: 474 NKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD 328 +K IPEVI KEIE AT IFPLQN++ RKVK+LK PKFD+G LM +HG+ Sbjct: 185 SKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_YEAST (P33442) 40S ribosomal protein S1-A (RP10A)| Length = 254 Score = 73.6 bits (179), Expect = 3e-13 Identities = 33/49 (67%), Positives = 40/49 (81%) Frame = -3 Query: 474 NKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD 328 +K IPEVI KEIE AT IFPLQN++ RKVK+LK PKFD+G LM +HG+ Sbjct: 185 SKLIPEVINKEIENATKDIFPLQNIHVRKVKLLKQPKFDVGALMALHGE 233
>RS3A_DROME (P55830) 40S ribosomal protein S3a (C3 protein)| Length = 267 Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/74 (45%), Positives = 46/74 (62%), Gaps = 8/74 (10%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD--------YK 322 VNK + I K+IEK+ I+PL +VY RKVK+LK P+FD+ KL+E+HGD Sbjct: 187 VNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGDGGGKSVEAVV 246 Query: 321 EDVGVKLDRPDGDE 280 G +DRP+G E Sbjct: 247 SSEGAVIDRPEGYE 260
>RS3A_ANOGA (P52813) 40S ribosomal protein S3a (C3 protein)| Length = 268 Score = 67.0 bits (162), Expect = 2e-11 Identities = 29/50 (58%), Positives = 38/50 (76%) Frame = -3 Query: 477 VNKFIPEVIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGD 328 V K +P+ I K+IEKA ++PL +VY RKVK+LK P+FDL LME+HGD Sbjct: 187 VEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLMELHGD 236
>YR297_MIMIV (Q5UPY3) Hypothetical protein R297| Length = 168 Score = 30.4 bits (67), Expect = 2.5 Identities = 11/36 (30%), Positives = 22/36 (61%) Frame = +3 Query: 129 QKYSRNQPSKLTTKFTTPRWHIYHLLNKKQQNSDFY 236 ++Y+ NQP++L T+ P ++ + N + N +FY Sbjct: 80 KQYNYNQPNRLQTRSVRPNYYSGYRYNNRTGNQEFY 115
>RS3A_SULSO (Q9UXD4) 30S ribosomal protein S3Ae| Length = 208 Score = 30.4 bits (67), Expect = 2.5 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -3 Query: 453 IGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLME 340 + EI +A I+PL+ K K+LK P+ +LGK +E Sbjct: 165 LANEIFEAAKKIYPLRKAEIEKTKVLKVPE-NLGKQVE 201
>COBQ_VIBPA (Q87HN1) Cobyric acid synthase| Length = 483 Score = 30.0 bits (66), Expect = 3.3 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%) Frame = -3 Query: 450 GKEIEKATSSIFPLQNVYARKVKILKAPKFDL---------GKLMEVHGDYKEDVGVKLD 298 G++I+KA I P + LK+ +D GK+M + G Y+ +G +D Sbjct: 286 GEKIDKADLIILPGTKSVRDDLAYLKSQGWDKDILRHIRLGGKVMGICGGYQM-LGKTID 344 Query: 297 RPDGDEVIPGAEE 259 PDG E PG+ E Sbjct: 345 DPDGVEGEPGSSE 357
>RS3A_SULAC (Q4JB17) 30S ribosomal protein S3Ae| Length = 197 Score = 29.6 bits (65), Expect = 4.3 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 4/41 (9%) Frame = -3 Query: 474 NKFIPEVI----GKEIEKATSSIFPLQNVYARKVKILKAPK 364 ++F+ +VI +I + I+PL+ V K K+LKAPK Sbjct: 156 DQFVQDVIFGKLSNDIFQEAKKIYPLRKVEIEKTKLLKAPK 196
>NAL13_HUMAN (Q86W25) NACHT-, LRR- and PYD-containing protein 13| (Nucleotide-binding oligomerization domain protein 14) Length = 1043 Score = 29.6 bits (65), Expect = 4.3 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 2/70 (2%) Frame = +3 Query: 24 HIWQE*TKYLVSTHNLHPESNTNKTR*LNA--G*ECRQKYSRNQPSKLTTKFTTPRWHIY 197 H W LV+ NLH +N ++ G K R + KLT K TP W + Sbjct: 713 HAWNSICSTLVTNENLHELDLSNSKLHASSVKGLCLALKNPRCKVQKLTCKSVTPEWVLQ 772 Query: 198 HLLNKKQQNS 227 L+ Q NS Sbjct: 773 DLIIALQGNS 782
>RS3A_PYRFU (Q8TZE1) 30S ribosomal protein S3Ae| Length = 198 Score = 29.3 bits (64), Expect = 5.6 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = -3 Query: 453 IGKEIEKATSSIFPLQNVYARKVKILKAPK 364 I EI K I+PL+ RK+K+L+ P+ Sbjct: 166 IAAEIAKEAKKIYPLRKAEIRKIKVLEEPQ 195
>RPOB_STRAW (Q82DQ5) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1181 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 456 VIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 280 ++GK K + + P + + R + KA + L HG+ + +GV++ DR +GDE Sbjct: 808 LVGKVTPKGETELTPEERLL-RAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 866 Query: 279 VIPGAEEV 256 + PG ++ Sbjct: 867 LPPGVNQL 874
>RPOB_STRCO (Q9L0L0) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1161 Score = 28.9 bits (63), Expect = 7.3 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%) Frame = -3 Query: 456 VIGKEIEKATSSIFPLQNVYARKVKILKAPKFDLGKLMEVHGDYKEDVGVKL-DRPDGDE 280 ++GK K + + P + + R + KA + L HG+ + +GV++ DR +GDE Sbjct: 788 LVGKVTPKGETELTPEERLL-RAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFDREEGDE 846 Query: 279 VIPGAEEV 256 + PG ++ Sbjct: 847 LPPGVNQL 854
>OAS3_HUMAN (Q9Y6K5) 2'-5'-oligoadenylate synthetase 3 (EC 2.7.7.-)| ((2-5')oligo(A) synthetase 3) (2-5A synthetase 3) (p100 OAS) (p100OAS) Length = 1087 Score = 28.5 bits (62), Expect = 9.6 Identities = 20/47 (42%), Positives = 25/47 (53%) Frame = +1 Query: 271 RNDLISIRPVKLHTNILLVVTVHLHELSQVKLRGLQDLHLAGVHVLE 411 R + ++IRP KL ILLV H QV L+GL L V+ LE Sbjct: 188 RRNFVNIRPAKLKNLILLV----KHWYHQVCLQGLWKETLPPVYALE 230 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 58,875,773 Number of Sequences: 219361 Number of extensions: 1004335 Number of successful extensions: 2377 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 2313 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2373 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
