ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32e01 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 115 bits (289), Expect = 3e-26 Identities = 59/60 (98%), Positives = 59/60 (98%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQHTLDPLTLVKARINNSGKASALIQHEF PKSLCTISAEVDTKAIEKSSKVGIAIALKP Sbjct: 216 TQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIEKSSKVGIAIALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 105 bits (263), Expect = 3e-23 Identities = 52/60 (86%), Positives = 58/60 (96%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQHTLDPLT+VKAR NNSGKASAL+QHE+RPKS+ TISAEVDTKAI+KSSKVGIA+ALKP Sbjct: 214 TQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAIDKSSKVGIAVALKP 273
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 99.0 bits (245), Expect = 4e-21 Identities = 47/60 (78%), Positives = 55/60 (91%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQH LDPLT VK R+ NSGKASALIQHE+RPKSL TIS+EVDTKAIEKS+K+G+++ALKP Sbjct: 216 TQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAIEKSAKIGLSLALKP 275
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 97.8 bits (242), Expect = 9e-21 Identities = 47/60 (78%), Positives = 55/60 (91%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQH LDPLT VKAR+N+ GKASALIQHE+RPKSL TIS EVDT+AIEKS+K+G+A+ALKP Sbjct: 216 TQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIEKSAKIGLAVALKP 275
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 94.7 bits (234), Expect = 8e-20 Identities = 45/60 (75%), Positives = 54/60 (90%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQH LDPLT VKAR+NN+G A+ALIQHE+RPKS T+S EVD+KAI+KS+KVGIA+ALKP Sbjct: 214 TQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAIDKSAKVGIALALKP 273
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 93.6 bits (231), Expect = 2e-19 Identities = 44/60 (73%), Positives = 53/60 (88%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQH LDPLT VKARINN GKASAL+QHE+RPKSL T+S EVDTK+++K +K G+A+ALKP Sbjct: 216 TQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVDKGAKFGLALALKP 275
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 92.4 bits (228), Expect = 4e-19 Identities = 44/60 (73%), Positives = 55/60 (91%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALKP 241 TQH+LDPLT VKAR+N++G ASALIQHE++PKS TIS EVDTK+I+KS+KVG+A+ALKP Sbjct: 216 TQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSIDKSAKVGLALALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 84.0 bits (206), Expect = 1e-16 Identities = 39/59 (66%), Positives = 49/59 (83%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIALK 244 +QH+LDP T +K R NN G ASAL+QHE+RPKS TIS +VDTKAIEKS+KVG+++ LK Sbjct: 218 SQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAIEKSTKVGLSLVLK 276
>VDAC2_RABIT (P68003) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin 2) Length = 294 Score = 35.4 bits (80), Expect = 0.055 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 235 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_PIG (Q9MZ15) Voltage-dependent anion-selective channel protein 2| Length = 294 Score = 35.4 bits (80), Expect = 0.055 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 235 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_BOVIN (P68002) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin 2) Length = 294 Score = 35.4 bits (80), Expect = 0.055 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LDP + A++NNS RP T+SA VD K+I K+G+A+ L+ Sbjct: 235 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKLGLALELE 293
>VDAC2_RAT (P81155) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) (B36-VDAC) Length = 295 Score = 33.9 bits (76), Expect = 0.16 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LDP + A++NNS RP T+SA VD K+ K+G+A+ L+ Sbjct: 236 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELE 294
>VDAC2_MOUSE (Q60930) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (mVDAC2) (mVDAC6) (Outer mitochondrial membrane protein porin 2) Length = 295 Score = 33.9 bits (76), Expect = 0.16 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LDP + A++NNS RP T+SA VD K+ K+G+A+ L+ Sbjct: 236 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSFNAGGHKLGLALELE 294
>TRPC_STAHJ (Q4L677) Indole-3-glycerol phosphate synthase (EC 4.1.1.48) (IGPS)| Length = 260 Score = 33.1 bits (74), Expect = 0.27 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = +3 Query: 57 DRHYTDQRQNSSGMKHGSSSNLTDC----DNAPKACEVFVKSP 173 D +Y D+ QN G+KH + S LTD DN E+ KSP Sbjct: 17 DGYYHDKLQNLKGVKHKNKSRLTDALIKNDNLTLIAEIKSKSP 59
>UVRC_LACJO (Q74JN8) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 600 Score = 32.3 bits (72), Expect = 0.47 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 193 +NG ++ K+K L+N R +FKS ++ +RA+ V I I T+ S+ E Sbjct: 25 VNGNVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDFDIITVSSDKE 74
>VDAC2_HUMAN (P45880) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (hVDAC2) (Outer mitochondrial membrane protein porin 2) Length = 347 Score = 32.0 bits (71), Expect = 0.61 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVG 262 ++ LDP + A++NNS RP T+SA VD K+I KVG Sbjct: 250 KYQLDPTASISAKVNNSSLIGVGYTQTLRPGVKLTLSALVDGKSINAGGHKVG 302
>COA1_RAT (P11497) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2345 Score = 31.6 bits (70), Expect = 0.80 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N L ++++EG +SP+ + S+ +DL AL DGL H+R Sbjct: 28 NSEDEISNL-VKLDLEEKEGSLSPASVSSDTLSDLGISALQDGLAFHMR 75
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 31.2 bits (69), Expect = 1.0 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 T++ +DP++ VK +IN+ G A+ R + A DT+ +++++ KVG + + Sbjct: 223 TKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLDQATHKVGTSFTFE 282
>UVRC_LACAC (Q5FKH6) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 600 Score = 31.2 bits (69), Expect = 1.0 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SI--CQIATIPSETE 193 +NG ++ K+K L+N R +FKS ++ +RA+ V I I T+ ++ E Sbjct: 25 INGTVIYVGKSKNLKNRVRSYFKSKQVGRRAELVREIRDYDIITVSTDKE 74
>COA1_HUMAN (Q13085) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.8 bits (68), Expect = 1.4 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL AL DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVGSDTLSDLGISALQDGLALHIR 76
>PER2_RAT (Q9Z301) Period circadian protein 2 (rPER2)| Length = 1257 Score = 30.8 bits (68), Expect = 1.4 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 3/46 (6%) Frame = +3 Query: 72 DQRQNSSGMKH---GSSSNLTDCDNAPKACEVFVKSPRFHPKPRNT 200 D SSG ++ G S +DCD++ K + V+S HP P +T Sbjct: 33 DMSSGSSGNENCSTGRDSQGSDCDDSGKELRMLVESSNTHPSPDDT 78
>VDAC2_MELGA (P82013) Voltage-dependent anion-selective channel protein 2| (VDAC-2) (Outer mitochondrial membrane protein porin 2) Length = 282 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LD + A++NNS RP T+SA +D K+I K+G+ + L+ Sbjct: 223 KYKLDSTASISAKVNNSSLVGVGYTQTLRPGVKLTLSALIDGKSINAGGHKLGLGLELE 281
>COA1_SHEEP (Q28559) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL +L DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76
>COA1_BOVIN (Q9TTS3) Acetyl-CoA carboxylase 1 (EC 6.4.1.2) (ACC-alpha)| [Includes: Biotin carboxylase (EC 6.3.4.14)] Length = 2346 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%) Frame = +1 Query: 166 NRHDSIRNRGTPLRVQKREGLISPSRLESNRNADL--RALLDGLGVHLR 306 N D I N ++++EG +SP+ + S+ +DL +L DGL +H+R Sbjct: 28 NSEDEISNLVKLDLLEEKEGSLSPASVSSDTLSDLGISSLQDGLALHMR 76
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAI-EKSSKVGIAIA 250 +++ LD T VK +IN++G A+ RP + ++DT+ + + + K G+++A Sbjct: 222 SKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPAHKAGLSLA 279
>UVRC_LACPL (Q88VE9) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 604 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 196 LN Q ++ K K L+N R +FKS+ + A+ V I I + T++ Sbjct: 25 LNSQIIYVGKAKNLKNRVRSYFKSSHTGKTARLVSEIADFEFIVTSTDK 73
>UVRC_LACSS (Q38WS5) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 592 Score = 29.6 bits (65), Expect = 3.0 Identities = 16/49 (32%), Positives = 26/49 (53%) Frame = +2 Query: 50 LNGQALHRPKTKFLRNETRQFFKSNRLRQRAQGV*SICQIATIPSETEE 196 +N Q ++ K K L+N R +FKS+ + A+ V I TI + T + Sbjct: 25 INAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNK 73
>VDAC2_XENLA (P81004) Voltage-dependent anion-selective channel protein 2 (Outer| mitochondrial membrane protein porin) Length = 282 Score = 29.6 bits (65), Expect = 3.0 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -1 Query: 417 QHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSS-KVGIAIALK 244 ++ LD + A++NNS RP T+SA VD K I K+G+ + L+ Sbjct: 223 KYQLDSHAAISAKVNNSSLVGVGYTQTLRPGVKLTLSALVDGKNINAGGHKLGLGLELE 281
>MPP9_HUMAN (Q99550) M-phase phosphoprotein 9| Length = 692 Score = 29.6 bits (65), Expect = 3.0 Identities = 19/61 (31%), Positives = 24/61 (39%) Frame = +3 Query: 57 DRHYTDQRQNSSGMKHGSSSNLTDCDNAPKACEVFVKSPRFHPKPRNTPESSEKRGLDFA 236 D +Y QR+N K NLT N EV P H KP+ + GL A Sbjct: 56 DIYYKKQREN----KQLPERNLTSASNPNHPPEVLTLDPTLHMKPKQQISGIQPHGLPNA 111 Query: 237 I 239 + Sbjct: 112 L 112
>VDAC_DICDI (Q01501) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/58 (24%), Positives = 30/58 (51%) Frame = -1 Query: 420 TQHTLDPLTLVKARINNSGKASALIQHEFRPKSLCTISAEVDTKAIEKSSKVGIAIAL 247 TQ+ +D +L+KA++NN+ K + + + + V+TK ++ + G + L Sbjct: 216 TQYKIDSASLLKAKVNNNRKVNISYIYNTSNNTKFVLGWNVNTKNFKQGNTFGATVNL 273
>PER2_MOUSE (O54943) Period circadian protein 2 (mPER2)| Length = 1257 Score = 28.1 bits (61), Expect = 8.8 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%) Frame = +3 Query: 72 DQRQNSSGMKH---GSSSNLTDCDNAPKACEVFVKSPRFHPKP 191 D SSG ++ G S +DCD+ K + V+S HP P Sbjct: 33 DMSSGSSGNENCSTGRDSQGSDCDDNGKELRMLVESSNTHPSP 75 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,159,288 Number of Sequences: 219361 Number of extensions: 954169 Number of successful extensions: 3181 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 3122 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3181 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
