ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32d11 |
|---|---|
| Clone Library Name | barley_pub |
>7SB1_SOYBN (P13917) Basic 7S globulin precursor (Bg) (SBg7S) [Contains: Basic| 7S globulin high-kDa subunit; Basic 7S globulin low-kDa subunit] Length = 427 Score = 42.4 bits (98), Expect = 8e-04 Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 2/104 (1%) Frame = -2 Query: 488 ARADKVEPFDLCYQASALTVTRVGYGVANIELMLD--GGRNWTLPGASSLVQVNNQTVCF 315 A+ V PF LC+ ++ + +++L++D G W + G +VQ C Sbjct: 317 AQVKSVAPFGLCFNSNKINA------YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCL 370 Query: 314 AFVQMASSSSMPAALDSPAVILGGHQMENNLLMFDLVKETFAFS 183 + + P A + LG Q+E NL++FDL + FS Sbjct: 371 GVM---NGGMQPRA----EITLGARQLEENLVVFDLARSRVGFS 407
>7SBG2_SOYBN (Q8RVH5) Basic 7S globulin 2 precursor (Bg) (SBg7S) [Contains:| Basic 7S globulin 2 high-kDa subunit; Basic 7S globulin 2 low-kDa subunit] Length = 433 Score = 40.0 bits (92), Expect = 0.004 Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%) Frame = -2 Query: 488 ARADKVEPFDLCYQASALTVTRVGYGVANIELMLD--GGRNWTLPGASSLVQVNNQTVCF 315 A+ V PF LC+ ++ + +++L++D G W + G +VQ C Sbjct: 323 AQVKSVAPFGLCFNSNKINA------YPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCL 376 Query: 314 AFVQMASSSSMPAALDSPAVILGGHQMENNLLMFDLVKETFAFS 183 + + P A V LG Q+E L++FDL + FS Sbjct: 377 GVM---NGGMQPRA----EVTLGTRQLEEKLMVFDLARSRVGFS 413
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 31.2 bits (69), Expect = 1.8 Identities = 13/31 (41%), Positives = 18/31 (58%) Frame = +3 Query: 342 HERAGAGQRPVPATVQHQLDVGHAVAHPGHG 434 H R G+G R P+ V+H GH+ +H HG Sbjct: 296 HGRQGSGSRQSPSHVRHGSGSGHSSSHGQHG 326 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/31 (38%), Positives = 17/31 (54%) Frame = +3 Query: 342 HERAGAGQRPVPATVQHQLDVGHAVAHPGHG 434 H R G+G P+ V+H GH+ +H HG Sbjct: 765 HGRQGSGSGHSPSRVRHGSSSGHSSSHGQHG 795
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/69 (31%), Positives = 34/69 (49%) Frame = -2 Query: 425 RVGYGVANIELMLDGGRNWTLPGASSLVQVNNQTVCFAFVQMASSSSMPAALDSPAVILG 246 +VG +ANI++M+D NN+ V +AFV+ S AL + L Sbjct: 95 QVGGPIANIKIMIDK---------------NNKNVNYAFVEYHQSHDANIALQT----LN 135 Query: 245 GHQMENNLL 219 G Q+ENN++ Sbjct: 136 GKQIENNIV 144
>INSL3_RAT (Q9WUK0) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 128 Score = 31.2 bits (69), Expect = 1.8 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -1 Query: 270 RLAGGDPRGAPDGEQPADVRSREGDVRVQWAAPRH 166 R+ GG PR +P+ QP D R RE +QW RH Sbjct: 39 RVCGG-PRWSPEATQPVDTRDRE---LLQWLEQRH 69
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 30.8 bits (68), Expect = 2.4 Identities = 38/117 (32%), Positives = 42/117 (35%), Gaps = 6/117 (5%) Frame = -1 Query: 507 RGDERHRARGQGGAVRPVLPGVRADRDPGGLRRGQHRADAGRWPELDAARRQLARAGEQP 328 RG R RG+GG G R R GG RR + R AG W G P Sbjct: 1384 RGPGGLRGRGRGGRGGGGGGGGRGPRGRGGRRRRRWRPGAGEW-------------GAGP 1430 Query: 327 DXXXXXXXXXXXXXXXRGARLAGGDPRG---AP---DGEQPADVRSREGDVRVQWAA 175 D RG R GG RG AP G R+ G+VRV AA Sbjct: 1431 DSFVFFSLGGGRGRGGRGGR--GGRGRGGGRAPRGGGGGPGGGGRAGRGEVRVAAAA 1485
>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)| Length = 512 Score = 30.8 bits (68), Expect = 2.4 Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Frame = -1 Query: 510 RRGDERHRARGQGGAVR----PVLPGVRADRDPGGLRRGQHRADAGRWPELDAARRQLAR 343 RRG R R RG GA P R +R+PGG R G D P +A R Sbjct: 141 RRGRRRGRGRGGPGAADGLSDPRRRAPRTNRNPGGPRPGAGWTDGPGAPHGEA-----WR 195 Query: 342 AGEQPD 325 EQPD Sbjct: 196 GSEQPD 201
>GCSPB_SULTO (Q972C0) Probable glycine dehydrogenase [decarboxylating] subunit 2| (EC 1.4.4.2) (Glycine decarboxylase subunit 2) (Glycine cleavage system P-protein subunit 2) Length = 505 Score = 30.4 bits (67), Expect = 3.1 Identities = 17/63 (26%), Positives = 28/63 (44%) Frame = +3 Query: 54 SFHQKYWNENAAFAKPGRDTLLIRTPHGEVEVAAGSADAEEQPTERERLLHEIEHQQVVL 233 S+HQ WNE F G+ + + P E S + E+ +E L E+ +V+ Sbjct: 2 SWHQAVWNEPLIFEYKGKGRIGFKIPEEEELKKEISINIPEKLRRKEIDLPELSELEVIR 61 Query: 234 HLV 242 H + Sbjct: 62 HFI 64
>METK_POPDE (P47916) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 395 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 66 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 233 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 176 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 231 Query: 234 HLVP 245 HL P Sbjct: 232 HLNP 235
>M3K12_MOUSE (Q60700) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 29.6 bits (65), Expect = 5.3 Identities = 35/120 (29%), Positives = 41/120 (34%), Gaps = 11/120 (9%) Frame = -1 Query: 525 APQRVRRGDERHRARGQGGAVRPVLPGVRA---DRDPGGL-RRGQHRADAGRWPELDAAR 358 +P R RRG RHR G+ LPG+RA +PGGL G W A Sbjct: 569 SPGRSRRGKTRHRKASAKGSCGD-LPGLRAALPPHEPGGLGSPGGLGVGPSAWDACPPAL 627 Query: 357 RQL-------ARAGEQPDXXXXXXXXXXXXXXXRGARLAGGDPRGAPDGEQPADVRSREG 199 R L + PD GAR G P P G+ P S G Sbjct: 628 RGLHHDLLLRKMSSSSPD-LLSAALGARGRGATGGARDPGSPP--PPQGDTPPSEGSAPG 684
>INSL3_MOUSE (O09107) Insulin-like 3 precursor (Leydig insulin-like peptide)| (Ley-I-L) (Relaxin-like factor) [Contains: Insulin-like 3 B chain; Insulin-like 3 A chain] Length = 122 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -1 Query: 270 RLAGGDPRGAPDGEQPADVRSREGDVRVQWAAPRH 166 R+ GG PR +P+ QP + R RE +QW RH Sbjct: 39 RVCGG-PRWSPEATQPVETRDRE---LLQWLEQRH 69
>METK_MESCR (P93254) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) Length = 392 Score = 29.6 bits (65), Expect = 5.3 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%) Frame = +3 Query: 66 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 233 +Y+NEN A T+LI T H E E+AA + +P E+ L E + + Sbjct: 175 EYYNENGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----KTIF 230 Query: 234 HLVP 245 HL P Sbjct: 231 HLNP 234
>SYFB_BRAJA (Q89WI2) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 802 Score = 29.3 bits (64), Expect = 6.9 Identities = 21/82 (25%), Positives = 32/82 (39%) Frame = -2 Query: 497 SGIARADKVEPFDLCYQASALTVTRVGYGVANIELMLDGGRNWTLPGASSLVQVNNQTVC 318 SG +AD + +A AL V ++ GG W PG S +Q+ Q V Sbjct: 607 SGSVQADLFDA-----KADALAVLAAAGAPMQALQIVAGGPGWLHPGRSGTIQIGPQNVL 661 Query: 317 FAFVQMASSSSMPAALDSPAVI 252 F +M + D P ++ Sbjct: 662 GYFGEMHPRALEALGADGPLMV 683
>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC| 2.7.11.25) (Mixed lineage kinase) (Leucine-zipper protein kinase) (ZPK) (Dual leucine zipper bearing kinase) (DLK) (MAPK-upstream kinase) (MUK) Length = 888 Score = 29.3 bits (64), Expect = 6.9 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -1 Query: 525 APQRVRRGDERHRARGQGGAVRPVLPGVRA---DRDPGGL 415 +P R RRG RHR G+ LPG+RA +PGGL Sbjct: 569 SPGRSRRGKTRHRKASAKGSCGD-LPGLRAALPPHEPGGL 607
>C11BA_BACTJ (Q45730) Pesticidal crystal protein cry11Ba (Insecticidal| delta-endotoxin CryXIB(a)) (Crystaline entomocidal protoxin) (81 kDa crystal protein) Length = 724 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 254 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 75 +LGG +E N D + ++F F LGI T+ +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWIDYITDSFTFDD--LGITTSSTNAFFSIDSDGVNASQQWYLSKLILV 633
>C11BB_BACTV (Q9ZIU5) Pesticidal crystal protein cry11Bb (Insecticidal| delta-endotoxin CryXIB(b)) (Crystaline entomocidal protoxin) (84 kDa crystal protein) Length = 750 Score = 28.9 bits (63), Expect = 9.0 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = -2 Query: 254 ILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNFNFTMGSSY*KSVTSWFCECSVFV 75 +LGG +E N D + ++F F+ LGI T +N F++ S + W+ + V Sbjct: 576 LLGGIPVEGNSGWVDYITDSFTFND--LGITTASTNAFFSIDSDGVNASQQWYLSKLILV 633
>Y138_METJA (Q57602) Hypothetical protein MJ0138| Length = 482 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = -2 Query: 257 VILGGHQMENNLLMFDLVKETFAFSGLLLGIRTTCSNF 144 +I GG +E+ L DL KE F+G ++GI CS F Sbjct: 41 IIPGGSLIESKSLNDDLKKEIINFNGYIIGI---CSGF 75
>RS3_BURPS (Q63Q17) 30S ribosomal protein S3| Length = 266 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -1 Query: 519 QRVRRGDERHRARGQGGAVRPVLPGVRADRDPGGLRRGQHRADAGRWPE 373 + R GD R R G+GGA PG R GG RRG + + G+ E Sbjct: 227 RNARPGDRRPRRDGEGGA-----PGARR----GGPRRGAGKPEDGKTGE 266
>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3| Length = 266 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -1 Query: 519 QRVRRGDERHRARGQGGAVRPVLPGVRADRDPGGLRRGQHRADAGRWPE 373 + R GD R R G+GGA PG R GG RRG + + G+ E Sbjct: 227 RNARPGDRRPRRDGEGGA-----PGARR----GGPRRGAGKPEDGKTGE 266
>RS3_BURMA (Q62GL1) 30S ribosomal protein S3| Length = 266 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = -1 Query: 519 QRVRRGDERHRARGQGGAVRPVLPGVRADRDPGGLRRGQHRADAGRWPE 373 + R GD R R G+GGA PG R GG RRG + + G+ E Sbjct: 227 RNARPGDRRPRRDGEGGA-----PGARR----GGPRRGAGKPEDGKTGE 266
>PATJ_DROME (Q9NB04) Patj homolog| Length = 871 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/34 (47%), Positives = 19/34 (55%) Frame = -1 Query: 486 ARGQGGAVRPVLPGVRADRDPGGLRRGQHRADAG 385 AR G V+ +LPG AD+D G LR G H G Sbjct: 166 ARNSGVIVKTILPGGVADKD-GRLRSGDHILQIG 198
>METL_DIACA (P24260) S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine| adenosyltransferase 2) (AdoMet synthetase 2) Length = 396 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Frame = +3 Query: 66 KYWNENAAFAKPGRDTLLIRTPHGEV----EVAAGSADAEEQPTERERLLHEIEHQQVVL 233 +Y+NEN A T+LI T H E E+AA + +P E+ L E + Sbjct: 179 EYYNENGAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDE----NTIF 234 Query: 234 HLVP 245 HL P Sbjct: 235 HLNP 238 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,917,095 Number of Sequences: 219361 Number of extensions: 1187433 Number of successful extensions: 4662 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4490 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4662 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
