ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32d08 |
|---|---|
| Clone Library Name | barley_pub |
>AROC_YERPE (Q8ZD41) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 31.6 bits (70), Expect = 1.3 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + + V H+ L+P+ + ++PG + E VE RGRH Sbjct: 276 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEMVTRGRH 319
>AROC_SALTY (P58729) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + +++ H+ L+P+ + +PG + A E VE +GRH Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 319
>AROC_SALCH (Q57LX0) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 31.6 bits (70), Expect = 1.3 Identities = 13/44 (29%), Positives = 25/44 (56%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + +++ H+ L+P+ + +PG + A E VE +GRH Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRH 320
>VE2_BPV3 (Q8BDD6) Regulatory protein E2| Length = 414 Score = 31.2 bits (69), Expect = 1.7 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 8/54 (14%) Frame = +1 Query: 346 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGC--------GASPPWPAHAGTATG 483 SP+ H PRA + RPP G RG G +PP P GT +G Sbjct: 259 SPSGSHSRPRAPHVPDQETGRPPGGGGRRGSRDQQQGPGGPAPPSPGEVGTRSG 312
>PFA4_NEUCR (Q7SCY6) Palmitoyltransferase PFA4 (EC 2.3.1.-) (Protein fatty| acyltransferase 4) Length = 486 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/40 (40%), Positives = 19/40 (47%) Frame = +1 Query: 364 GPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATG 483 GP +A + C AP+PPRA R C P H TG Sbjct: 97 GPQKAKWCKKCDAPKPPRAHHCRHCARCIPRMDHHCPWTG 136
>AROC_YERPS (Q668V5) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.8 bits (68), Expect = 2.2 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + + V H+ L+P+ + ++PG + E VE RGRH Sbjct: 277 LGGISSGQPVVAHIALKPTSSIMVPGQTINRQGEAVEIVTRGRH 320
>AROC_PHOLL (Q7N299) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.8 bits (68), Expect = 2.2 Identities = 13/44 (29%), Positives = 24/44 (54%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + + + H+ L+P+ + ++PG + E VE RGRH Sbjct: 277 LGGISSSQPIVAHIALKPTSSIMVPGKTINRQGEEVEMVTRGRH 320
>AROC_ERWCT (Q6D2M6) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 30.4 bits (67), Expect = 2.8 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + + + HL L+P+ + ++PG + E E RGRH Sbjct: 277 LGGISSGQNIVAHLALKPTSSIMVPGKTINRQGEATEMVTRGRH 320
>INSI1_CRIGR (Q8CFA6) Insulin-induced gene 1 protein (INSIG-1)| Length = 257 Score = 30.4 bits (67), Expect = 2.8 Identities = 14/18 (77%), Positives = 14/18 (77%) Frame = +1 Query: 397 PAPRPPRAGSTRGCGASP 450 PAPR PRAG T GCGA P Sbjct: 41 PAPRSPRAG-TAGCGARP 57
>5E5_RAT (Q63003) 5E5 antigen| Length = 825 Score = 30.0 bits (66), Expect = 3.7 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = -1 Query: 356 SAGEQGCRCARGRAPGAGELVGAEAQVHGQGGR-WAMDA 243 S GE G RGR GAGE + G+GGR W +A Sbjct: 292 SPGEWGADVPRGRGEGAGEWGSDVPKDRGEGGREWGPEA 330
>PHX2B_MOUSE (O35690) Paired mesoderm homeobox protein 2B (Paired-like homeobox| 2B) (PHOX2B homeodomain protein) (Neuroblastoma Phox) (NBPhox) Length = 314 Score = 30.0 bits (66), Expect = 3.7 Identities = 38/126 (30%), Positives = 42/126 (33%), Gaps = 10/126 (7%) Frame = -1 Query: 485 NPVAVPACA--GHGGDAPQPRVLPXXXXXXXXXXXXXXXXXGP*HSAGEQG--------C 336 NP P+C G GG P P P GP GE G Sbjct: 201 NPNPTPSCGANGGGGGGPSPAGAP--------------GAAGPGGPGGEPGKGGAAAAAA 246 Query: 335 RCARGRAPGAGELVGAEAQVHGQGGRWAMDAPGLQAHLS*VTRIGHSLGGEWALM*FTAL 156 A A A G A G G WA PG +T I SLGG +A + L Sbjct: 247 AAAAAAAAAAAAAAGGLAAAGGPGQGWA-PGPGP------ITSIPDSLGGPFA----SVL 295 Query: 155 CSLPRP 138 SL RP Sbjct: 296 SSLQRP 301
>EVL_HUMAN (Q9UI08) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 416 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +1 Query: 346 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATGLS 489 +P C GPP P P PP G PP P AG A G S Sbjct: 175 APVSCSGPP--------PPPPPPVPPPPTGATPPPPPPLPAGGAQGSS 214
>EVL_PONPY (Q5R896) Ena/VASP-like protein (Ena/vasodilator stimulated| phosphoprotein-like) Length = 422 Score = 30.0 bits (66), Expect = 3.7 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +1 Query: 346 SPALCHGPPRA*TLRHCPAPRPPRAGSTRGCGASPPWPAHAGTATGLS 489 +P C GPP P P PP G PP P AG A G S Sbjct: 181 APVSCSGPP--------PPPPPPVPPPPTGATPPPPPPLPAGGAQGSS 220
>AROC_SALTI (P16280) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 360 Score = 29.6 bits (65), Expect = 4.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + +++ H+ L+P+ + +PG + E VE +GRH Sbjct: 276 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 319
>AROC_SALPA (Q5PCX2) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 361 Score = 29.6 bits (65), Expect = 4.8 Identities = 12/44 (27%), Positives = 24/44 (54%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + +++ H+ L+P+ + +PG + E VE +GRH Sbjct: 277 LGGISSGQHIVAHMALKPTSSITVPGRTINRMGEEVEMITKGRH 320
>AROC_PSEAE (Q9I344) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 363 Score = 29.6 bits (65), Expect = 4.8 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVALEVVERPHRGRH 463 +G + + + HL L+P+ + PG + A E V+ +GRH Sbjct: 276 LGGISSGQPIVAHLALKPTSSITTPGRSIDTAGEPVDMITKGRH 319
>NUDEL_DROME (P98159) Serine protease nudel precursor (EC 3.4.21.-)| Length = 2616 Score = 29.6 bits (65), Expect = 4.8 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 3/58 (5%) Frame = +2 Query: 332 IGTLVHQRYVTVHLELEPSGTALLPGHPVQVAL---EVVERPHRGRHTQVRRPDCRYG 496 IG L+ + +V VH E SG L H V V L + HR H Q+RR DC G Sbjct: 2056 IGVLIDKHWVMVH-ESCLSGIDL-ETHYVSVLLGGGKTKRSAHRSNHEQIRRVDCFEG 2111
>ADA19_MOUSE (O35674) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) Length = 920 Score = 29.3 bits (64), Expect = 6.3 Identities = 30/94 (31%), Positives = 36/94 (38%), Gaps = 3/94 (3%) Frame = +3 Query: 135 PRSWQRAQRRESHQRPLSS**MADASNLT*MCLKSWSVHRPSPP---LTMNLCFGTHQLA 305 P + R +R+ES +RP S M A N CL S RP PP L N G Sbjct: 821 PEAGARIERKESARRPPPSRPMPPAPN----CLLSQDFSRPRPPQKALPANPVPGQRTGP 876 Query: 306 GTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSP 407 +G TS + TS PP P P Sbjct: 877 RSG----------GTSLLQPPTSGPQPPRPPAVP 900
>THIC2_METTH (O27617) Probable thiamine biosynthesis protein thiC 2| Length = 424 Score = 29.3 bits (64), Expect = 6.3 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 7/68 (10%) Frame = -2 Query: 502 QLTITTIRSPYLRVPATV-------GTLHNLECYLHGVAGEQGSAGGFKLEVDRDIALVN 344 Q+ I I + + +P+ + G NL ++ G +LEVD+ +A V Sbjct: 28 QMLIRGIANGRIVIPSNINRESSPCGIGENLSTKINANIGSSSKMEDIELEVDKALAAVE 87 Query: 343 KGADALAD 320 GADA+ D Sbjct: 88 YGADAVMD 95
>HCN4_RABIT (Q9TV66) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 4 (Hyperpolarization-activated cation channel 4) (HAC-4) Length = 1175 Score = 29.3 bits (64), Expect = 6.3 Identities = 16/52 (30%), Positives = 20/52 (38%) Frame = +3 Query: 255 PSPPLTMNLCFGTHQLAGTGCXXXXXXXPLFTSAMSRSTSSLNPPALPCSPA 410 P+PP T +H G PL T S + S PP P +PA Sbjct: 882 PTPPTTAGAAGFSHFHRALGGSLSSSDSPLLTPMQSAARSPQQPPPPPGAPA 933
>SASH1_MOUSE (P59808) SAM and SH3 domain-containing protein 1| Length = 1230 Score = 28.9 bits (63), Expect = 8.2 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 5/36 (13%) Frame = +1 Query: 394 CPAPRPPRAGS-----TRGCGASPPWPAHAGTATGL 486 CP+PR PR S + C PPW A +T L Sbjct: 1018 CPSPREPRPSSGTEPGSPACTRPPPWLAELPESTSL 1053
>UPPS_XANOR (Q5H1E5) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 258 Score = 28.9 bits (63), Expect = 8.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = -2 Query: 316 HPVPASWWVPKHKFMVKGGDGRW 248 HPVP VP+H ++ G+GRW Sbjct: 7 HPVPPVADVPRHIAIIMDGNGRW 29 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,818,752 Number of Sequences: 219361 Number of extensions: 1683234 Number of successful extensions: 5754 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 5353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5727 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3638905326 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
