>RSBQ_BACSU (O07015) Sigma factor sigB regulation protein rsbQ|
          Length = 269

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 25/88 (28%), Positives = 43/88 (48%)
 Frame = -1

Query: 492 DVPAAVQEFSRTLFNMRPDISLHVCQSVFKTDLRGVLGMVQAPCVVVQTTRDVSVPASVA 313
           D P   +E      +  P I+    ++ F +D R  L  V  P +++Q   D+  PA+V 
Sbjct: 168 DRPEIKEELESRFCSTDPVIARQFAKAAFFSDHREDLSKVTVPSLILQCADDIIAPATVG 227

Query: 312 AYLKAHLGGRTTIEPLPTEGHLPHLSAP 229
            Y+  HL   ++++ +   GH PH+S P
Sbjct: 228 KYMHQHLP-YSSLKQMEARGHCPHMSHP 254

>LONH1_THEVO (P58274) Putative protease La homolog type 1 (EC 3.4.21.-)|
          Length = 655

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 167 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 78
           KK  GK + ++D+H+++VG   G EG + S
Sbjct: 498 KKITGKDISNMDIHIQFVGTYEGVEGDSAS 527

>LONH1_THEAC (Q9HJ89) Putative protease La homolog type 1 (EC 3.4.21.-)|
          Length = 657

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -2

Query: 167 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 78
           KK  GK + ++D+H+++VG   G EG + S
Sbjct: 498 KKLTGKDISNMDIHIQFVGTYEGVEGDSAS 527

>BIOH_CHRVO (Q7NPW5) Carboxylesterase bioH (EC 3.1.1.1) (Biotin synthesis|
           protein bioH)
          Length = 254

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/70 (27%), Positives = 25/70 (35%)
 Frame = -1

Query: 444 RPDISLHVCQSVFKTDLRGVLGMVQAPCVVVQTTRDVSVPASVAAYLKAHLGGRTTIEPL 265
           RP   L     + + D R + G +Q P  +    RD   P     +L   L      E  
Sbjct: 169 RPQGLLPALGLLLEADARALAGRIQCPAALFYGARDAITPIGAGRWLAESLPDAVLYE-F 227

Query: 264 PTEGHLPHLS 235
           P   H P LS
Sbjct: 228 PQASHAPFLS 237

>PML_MOUSE (Q60953) Probable transcription factor PML|
          Length = 808

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +1

Query: 376 HAQHAAEVG-LEHALADVERDVRPHVEQ 456
           HAQ  + +G L+HA AD+E+ +R  V Q
Sbjct: 231 HAQMCSAIGQLDHARADIEKQIRARVRQ 258

>LONH_ARCFU (O29883) Putative protease La homolog type (EC 3.4.21.-)|
          Length = 621

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 167 KKERGKKLLHLDLHVEYVGGTRGREGHAKS 78
           KK  G+ + ++D+H+++VG   G EG + S
Sbjct: 482 KKYTGRDISNMDVHIQFVGTYEGVEGDSAS 511

>CE110_MOUSE (Q7TSH4) Centrosomal protein of 110 kDa (Cep110 protein)|
          Length = 1004

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = -1

Query: 402 TDLRGVLGM-VQAPCVVVQTTRDVSV--PASVAAYLKAHLGGRTTIEPLPTEG 253
           TDL GV    V A  +  ++TR++ V  P+     L AHLG   T+E    EG
Sbjct: 428 TDLTGVCSSNVSATKITSESTREMVVGKPSQRQQALGAHLGNNVTVERSAMEG 480

>VINT_BPMFR (P25426) Integrase|
          Length = 333

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -1

Query: 354 VQTTRDVSVPASVAAYLKAHLGGRTTIEPLP 262
           V++ R V+VP  VAA ++AH+  RT +   P
Sbjct: 208 VRSKRPVTVPPHVAAMIRAHMADRTKMNKGP 238

>CF146_RAT (Q5XHY8) Protein C6orf146 homolg|
          Length = 419

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
 Frame = +2

Query: 263 GRGSMVVRPPRWALRYAATEAGTETSRVVCTTTHGACTMP----STPRRSVLN 409
           G G      P+W+L  A        S + C++T   C M       P+ S+LN
Sbjct: 272 GSGKPEQNVPKWSLSTAGKSKSNSRSLLKCSSTSKQCAMAHDDVKNPKNSILN 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,901,859
Number of Sequences: 219361
Number of extensions: 813447
Number of successful extensions: 2774
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2774
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)