ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline... 31 1.8

>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 16/33 (48%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
 Frame = -2

Query: 392 RHGYNGDKHGHL------PEPHRGSDPVSNMFN 312
           RH Y    HGHL      P PHRG  P S  FN
Sbjct: 74  RHAYPPPSHGHLPPSVGGPPPHRGHLPPSRGFN 106


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,571,056
Number of Sequences: 219361
Number of extensions: 789128
Number of successful extensions: 2381
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 2331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2380
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 3970331829
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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