ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 150 gcatcgccaggtcgcagccggcct 173 |||||||||||||||||||||||| Sbjct: 2571424 gcatcgccaggtcgcagccggcct 2571401
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 404 ggatgaaaggagaggagaggaga 426 ||||||||||||||||||||||| Sbjct: 19175140 ggatgaaaggagaggagaggaga 19175118
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 46.1 bits (23), Expect = 0.096 Identities = 23/23 (100%) Strand = Plus / Minus Query: 404 ggatgaaaggagaggagaggaga 426 ||||||||||||||||||||||| Sbjct: 108661 ggatgaaaggagaggagaggaga 108639
>gb|CP000068.1| Trypanosoma brucei chromosome 5, complete sequence Length = 1608198 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 409 aaaggagaggagaggagatggt 430 |||||||||||||||||||||| Sbjct: 468346 aaaggagaggagaggagatggt 468367
>gb|AC159443.1| Trypanosoma brucei chromosome 5 clone RPCI93-30H13, complete sequence Length = 152941 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 409 aaaggagaggagaggagatggt 430 |||||||||||||||||||||| Sbjct: 84897 aaaggagaggagaggagatggt 84918
>gb|AC128700.4| Mus musculus BAC clone RP24-130A20 from chromosome 8, complete sequence Length = 161757 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 gatgaaaggagaggagaggaga 426 |||||||||||||||||||||| Sbjct: 55562 gatgaaaggagaggagaggaga 55583
>gb|AC130841.4| Mus musculus BAC clone RP24-445L16 from chromosome 8, complete sequence Length = 174384 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 405 gatgaaaggagaggagaggaga 426 |||||||||||||||||||||| Sbjct: 152154 gatgaaaggagaggagaggaga 152175
>gb|AC121843.3| Mus musculus BAC clone RP24-80P19 from chromosome 5, complete sequence Length = 196947 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 412 ggagaggagaggagatggtatg 433 |||||||||||||||||||||| Sbjct: 83925 ggagaggagaggagatggtatg 83946
>dbj|AP005231.2| Homo sapiens genomic DNA, chromosome 18 clone:RP11-78G22, complete sequence Length = 102488 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 50 gcacacacacgcacaatgcatgcatg 75 ||||||||| |||||||||||||||| Sbjct: 27183 gcacacacatgcacaatgcatgcatg 27208
>gb|AC101924.24| Mus musculus chromosome 1, clone RP24-391B5, complete sequence Length = 161617 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 cacacacacgcacaatgcatgcatg 75 ||||||||| ||||||||||||||| Sbjct: 133281 cacacacacacacaatgcatgcatg 133257
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 1999900 atgaaaggagaggagaggaga 1999920
>ref|XM_878074.1| PREDICTED: Bos taurus similar to STIP1 homology and U-box containing protein 1, transcript variant 3 (LOC504565), mRNA Length = 692 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 tcacatcacagcacacacacgcaca 64 |||||||||||||||||||| |||| Sbjct: 285 tcacatcacagcacacacacacaca 261
>ref|XM_878033.1| PREDICTED: Bos taurus similar to STIP1 homology and U-box containing protein 1, transcript variant 2 (LOC504565), mRNA Length = 630 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 40 tcacatcacagcacacacacgcaca 64 |||||||||||||||||||| |||| Sbjct: 223 tcacatcacagcacacacacacaca 199
>gb|AC137588.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0060K21, complete sequence Length = 153973 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cacacacgcacaatgcatgca 73 ||||||||||||||||||||| Sbjct: 44214 cacacacgcacaatgcatgca 44234
>gb|AC124743.5| Mus musculus BAC clone RP23-219C1 from 1, complete sequence Length = 220167 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 cacacacacgcacaatgcatgcatg 75 ||||||||| ||||||||||||||| Sbjct: 62959 cacacacacacacaatgcatgcatg 62935
>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155643 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 aaaggagaggagaggagatgg 429 ||||||||||||||||||||| Sbjct: 30289 aaaggagaggagaggagatgg 30309
>emb|AL358792.24| Human DNA sequence from clone RP11-280M4 on chromosome 9 Contains the 5' end of the ASTN2 gene for astrotactin2 (KIAA0364) and a CpG island, complete sequence Length = 166931 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 409 aaaggagaggagaggagatgg 429 ||||||||||||||||||||| Sbjct: 125670 aaaggagaggagaggagatgg 125650
>gb|AY331713.1| Oryza sativa Osg6B-like gene, promoter region and 5' UTR Length = 1688 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cacacacgcacaatgcatgca 73 ||||||||||||||||||||| Sbjct: 870 cacacacgcacaatgcatgca 890
>emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on chromosome 4 Contains a novel gene and the 3' end of a novel gene, complete sequence Length = 196097 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 69685 gaaaggagaggagaggagatg 69705
>gb|AC069226.19| Homo sapiens 3 BAC RP11-426J22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 187303 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 171808 atgaaaggagaggagaggaga 171828
>gb|AC040927.18| Mus musculus chromosome 5, clone RP23-186A21, complete sequence Length = 206156 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 147940 atgaaaggagaggagaggaga 147920
>gb|AC161889.5| Mus musculus 10 BAC RP23-361O18 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 228043 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 aaaggagaggagaggagatgg 429 ||||||||||||||||||||| Sbjct: 209078 aaaggagaggagaggagatgg 209098
>gb|AC148704.1| Macaca mulatta Major Histocompatibility Complex BAC MMU337E21, complete sequence Length = 147539 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 111045 gaaaggagaggagaggagatg 111065
>gb|AC148694.1| Macaca mulatta Major Histocompatibility Complex BAC MMU242A19, complete sequence Length = 208276 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 26021 gaaaggagaggagaggagatg 26041
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cacacacgcacaatgcatgca 73 ||||||||||||||||||||| Sbjct: 21162055 cacacacgcacaatgcatgca 21162075
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 15676826 gaaaggagaggagaggagatg 15676846
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 18679279 gaaaggagaggagaggagatg 18679299 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 acggaggcaacagcggcatcg 155 ||||||||||||||||||||| Sbjct: 9015331 acggaggcaacagcggcatcg 9015351
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 164192 gaaaggagaggagaggagatg 164212
>dbj|AB128049.1| Macaca mulatta genes, MHC class I region, partial and complete cds Length = 3284914 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 1516481 gaaaggagaggagaggagatg 1516461
>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0003H03 Length = 157905 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 acggaggcaacagcggcatcg 155 ||||||||||||||||||||| Sbjct: 25641 acggaggcaacagcggcatcg 25661
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 acggaggcaacagcggcatcg 155 ||||||||||||||||||||| Sbjct: 116993 acggaggcaacagcggcatcg 117013
>dbj|AP004193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1756_G07 Length = 149457 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 106549 gaaaggagaggagaggagatg 106569
>dbj|AK066660.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072E16, full insert sequence Length = 641 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 25 gaaaggagaggagaggagatg 5
>gb|AC107632.21| Mus musculus chromosome 9, clone RP23-6I5, complete sequence Length = 201942 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 248 aacttcccttcagggcagggcacacaccc 276 |||||| |||||||||||| ||||||||| Sbjct: 103486 aacttcacttcagggcaggccacacaccc 103458
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagatg 428 ||||||||||||||||||||| Sbjct: 15685067 gaaaggagaggagaggagatg 15685087
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cacacacgcacaatgcatgca 73 ||||||||||||||||||||| Sbjct: 21472296 cacacacgcacaatgcatgca 21472316
>gb|AC164875.14| Mus musculus chromosome 1, clone RP23-59P14, complete sequence Length = 250957 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 159791 atgaaaggagaggagaggaga 159811
>emb|AL929163.5| Mouse DNA sequence from clone RP23-450P9 on chromosome 2, complete sequence Length = 184256 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 56722 atgaaaggagaggagaggaga 56742
>dbj|D21160.1|RICASP2 Rice Osg6B gene for anther specific protein, complete cds (exon1, exon2, exon3) Length = 3640 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 53 cacacacgcacaatgcatgca 73 ||||||||||||||||||||| Sbjct: 886 cacacacgcacaatgcatgca 906
>dbj|AP003532.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-822P1, complete sequences Length = 204928 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 51 cacacacacgcacaatgcatgcatg 75 ||||||||| ||||||||||||||| Sbjct: 180056 cacacacacacacaatgcatgcatg 180080
>emb|AL670838.3| Mouse DNA sequence from clone RP23-474L1 on chromosome 4, complete sequence Length = 114419 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 atgaaaggagaggagaggaga 426 ||||||||||||||||||||| Sbjct: 49141 atgaaaggagaggagaggaga 49121
>gb|AY816317.1| Ajellomyces capsulatus FLU1 (FLU1) gene, complete cds, alternatively spliced Length = 3995 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 caagacggcggtgaacttga 386 |||||||||||||||||||| Sbjct: 2549 caagacggcggtgaacttga 2568
>gb|AC115011.27| Mus musculus chromosome 1, clone RP24-192A11, complete sequence Length = 173802 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gcacacacacgcacaatgca 69 |||||||||||||||||||| Sbjct: 141606 gcacacacacgcacaatgca 141625
>gb|U67418.1|ECU67418 Equus caballus UCD-E-CA-493 dinucleotide repeat region, complete sequence Length = 325 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cacacacacgcacaatgcat 70 |||||||||||||||||||| Sbjct: 43 cacacacacgcacaatgcat 24
>gb|AC123599.6| Mus musculus chromosome 5, clone RP23-231D13, complete sequence Length = 191607 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggag 425 |||||||||||||||||||| Sbjct: 102729 atgaaaggagaggagaggag 102748
>gb|AC159319.2| Mus musculus BAC clone RP23-37C8 from chromosome 9, complete sequence Length = 175636 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 ataacatttctggttattta 33 |||||||||||||||||||| Sbjct: 74787 ataacatttctggttattta 74806
>gb|AC114651.11| Mus musculus chromosome 1, clone RP24-153E5, complete sequence Length = 176384 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gcacacacacgcacaatgca 69 |||||||||||||||||||| Sbjct: 146932 gcacacacacgcacaatgca 146913
>gb|AC127951.4| Rattus norvegicus 18 BAC CH230-150D9 (Children's Hospital Oakland Research Institute) complete sequence Length = 164101 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 cacagcacacacacgcacaa 65 |||||||||||||||||||| Sbjct: 99434 cacagcacacacacgcacaa 99453
>gb|AC115341.6| Rattus norvegicus 3 BAC CH230-248O1 (Children's Hospital Oakland Research Institute) complete sequence Length = 237425 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 cacacacacgcacaatgcatgcat 74 ||||||||| |||||||||||||| Sbjct: 222506 cacacacacacacaatgcatgcat 222529
>gb|BC068315.1| Mus musculus ectodysplasin-A receptor, mRNA (cDNA clone MGC:76714 IMAGE:30098537), complete cds Length = 3665 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 455 agaacttctctgcagggcagggcacaca 428
>gb|AC161228.7| Mus musculus chromosome 3, clone RP24-77I5, complete sequence Length = 222551 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 gatgaaaggagaggagaggagatg 428 |||||||||||||||| ||||||| Sbjct: 66125 gatgaaaggagaggagcggagatg 66102
>gb|AC118639.12| Mus musculus chromosome 15, clone RP24-112I4, complete sequence Length = 166053 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 408 gaaaggagaggagaggagat 427 |||||||||||||||||||| Sbjct: 30659 gaaaggagaggagaggagat 30678
>gb|AC124669.8| Mus musculus chromosome 1, clone RP23-110B5, complete sequence Length = 201456 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cacatcacagcacacacacgcaca 64 ||||||||||||||||||| |||| Sbjct: 82294 cacatcacagcacacacacacaca 82271
>ref|XM_972667.1| PREDICTED: Mus musculus similar to Tumor necrosis factor receptor superfamily member EDAR precursor (Anhidrotic ectodysplasin receptor 1) (Ectodysplasin-A receptor) (Ectodermal dysplasia receptor) (Downless) (LOC669001), mRNA Length = 3456 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 271 agaacttctctgcagggcagggcacaca 244
>gb|AC102392.8| Mus musculus chromosome 3, clone RP24-122I22, complete sequence Length = 201067 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 gcacacacacgcacaatgcatgca 73 |||||||||| ||||||||||||| Sbjct: 135866 gcacacacacacacaatgcatgca 135843
>gb|AC129606.4| Mus musculus BAC clone RP23-128L6 from 8, complete sequence Length = 235915 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 143242 tgaaaggagaggagaggaga 143223
>gb|AC122841.4| Mus musculus BAC clone RP23-194E5 from 3, complete sequence Length = 200088 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 405 gatgaaaggagaggagaggagatg 428 |||||||||||||||| ||||||| Sbjct: 7603 gatgaaaggagaggagcggagatg 7626
>gb|AY222992.1| Schistosoma japonicum clone ZZD1054 mRNA sequence Length = 1371 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 gagaggagatggtatgcttt 437 |||||||||||||||||||| Sbjct: 826 gagaggagatggtatgcttt 807
>ref|NM_010100.1| Mus musculus ectodysplasin-A receptor (Edar), mRNA Length = 3720 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 497 agaacttctctgcagggcagggcacaca 470
>emb|AL358235.16| Human DNA sequence from clone RP11-196N24 on chromosome 10 Contains the 5' end of the gene for a novel protein (possible ortholog of mouse phosphoinositide-3-kinase adaptor protein 1 (Pik3ap1)), the ribosomal protein L13a pseudogene 5 (RPL13AP5) and a CpG island, complete sequence Length = 106506 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 84098 tgaaaggagaggagaggaga 84117
>gb|AC012391.10| Homo sapiens chromosome 10 clone RP11-162A23, complete sequence Length = 181948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 ttatttttgtcacatcacag 50 |||||||||||||||||||| Sbjct: 111189 ttatttttgtcacatcacag 111208
>emb|AL354853.12| Human DNA sequence from clone RP11-555F9 on chromosome 9q22.1-22.33 Contains the 5' end of a novel gene and the 3' end of a novel gene, complete sequence Length = 176422 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cacatcacagcacacacacgcaca 64 ||||||||||||||||||| |||| Sbjct: 74344 cacatcacagcacacacacacaca 74321
>gb|AC161149.6| Mus musculus BAC clone RP23-350B16 from chromosome 1, complete sequence Length = 217329 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cacatcacagcacacacacgcaca 64 |||||||||||||||||| ||||| Sbjct: 100845 cacatcacagcacacacatgcaca 100822
>gb|AC166081.3| Mus musculus 10 BAC RP24-184F11 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 161394 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 129188 agaacttctctgcagggcagggcacaca 129161
>emb|BX927234.8| Zebrafish DNA sequence from clone CH211-196N4 in linkage group 19, complete sequence Length = 187155 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ttatttatttttgtcacatc 46 |||||||||||||||||||| Sbjct: 162318 ttatttatttttgtcacatc 162299
>gb|AC159232.2| Mus musculus BAC clone RP24-392E16 from chromosome 13, complete sequence Length = 169281 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 96512 tgaaaggagaggagaggaga 96531
>gb|AC158593.8| Mus musculus 10 BAC RP23-197F5 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216621 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 202950 agaacttctctgcagggcagggcacaca 202977
>gb|AF253322.1|AF253322 Homo sapiens cytochrome P450 (CYP1A1) and cytochrome P450 (CYP1A2) genes, complete cds Length = 43064 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 atgaaaggagaggagaggag 425 |||||||||||||||||||| Sbjct: 41976 atgaaaggagaggagaggag 41957
>gb|AY563672.1| Bemisia tabaci clone 41Masi cytochrome oxidase subunit I-like (COI) gene, partial sequence; mitochondrial Length = 748 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 atttctggttatttattttt 38 |||||||||||||||||||| Sbjct: 629 atttctggttatttattttt 648
>gb|DQ022432.1| Homo sapiens cytochrome P450, family 1, subfamily A, polypeptide 2 (CYP1A2) gene, complete cds Length = 11113 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 406 atgaaaggagaggagaggag 425 |||||||||||||||||||| Sbjct: 9929 atgaaaggagaggagaggag 9910
>gb|AC078930.13|AC078930 Mus musculus 10 BAC 280B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 226168 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 205823 agaacttctctgcagggcagggcacaca 205850
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 agcggcatcgccaggtcgcagccg 169 |||| ||||||||||||||||||| Sbjct: 2050769 agcgtcatcgccaggtcgcagccg 2050746
>gb|AC097587.3| Sus scrofa clone RP44-50K20, complete sequence Length = 111967 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 atttctggttatttattttt 38 |||||||||||||||||||| Sbjct: 61194 atttctggttatttattttt 61213
>gb|AC091230.23| Homo sapiens chromosome 15, clone RP11-414J4, complete sequence Length = 206482 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 406 atgaaaggagaggagaggag 425 |||||||||||||||||||| Sbjct: 117196 atgaaaggagaggagaggag 117215
>emb|AL590633.9| Mouse DNA sequence from clone RP23-211O23 on chromosome X, complete sequence Length = 179289 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cacatcacagcacacacacgcaca 64 ||||||||| |||||||||||||| Sbjct: 9549 cacatcacaccacacacacgcaca 9526
>ref|XM_310055.2| Anopheles gambiae str. PEST ENSANGP00000023485 (ENSANGG00000020291), partial mRNA Length = 1638 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 tcacagcacacacacgcaca 64 |||||||||||||||||||| Sbjct: 97 tcacagcacacacacgcaca 78
>gb|AC169371.2| Sorghum bicolor clone SB_BBc0127F08, complete sequence Length = 70712 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 25978 tgaaaggagaggagaggaga 25959
>gb|AF160502.1|AF160502 Mus musculus ectodermal dysplasia receptor (dl) mRNA, complete cds Length = 3720 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 246 agaacttcccttcagggcagggcacaca 273 |||||||| || |||||||||||||||| Sbjct: 497 agaacttctctgcagggcagggcacaca 470
>gb|AC113018.7| Mus musculus chromosome 5, clone RP23-183C18, complete sequence Length = 215671 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 85216 tgaaaggagaggagaggaga 85197
>gb|AY664416.1| Zea mays cultivar Mo17 locus bz, complete sequence Length = 203581 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 tcacagcacacacacgcaca 64 |||||||||||||||||||| Sbjct: 144706 tcacagcacacacacgcaca 144725
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 326 gtggccggggccagagcggcggcg 349 |||||||||||| ||||||||||| Sbjct: 3345160 gtggccggggcccgagcggcggcg 3345137
>gb|AC124593.4| Mus musculus BAC clone RP23-10D15 from 3, complete sequence Length = 187362 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 98352 tgaaaggagaggagaggaga 98371
>gb|AC140674.4| Mus musculus BAC clone RP23-368L9 from 3, complete sequence Length = 212854 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 gcacacacacgcacaatgcatgca 73 |||||||||| ||||||||||||| Sbjct: 116171 gcacacacacacacaatgcatgca 116148
>gb|AC102776.10| Mus musculus chromosome 1, clone RP23-469D21, complete sequence Length = 190746 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 cacacacacgcacaatgcatgcat 74 ||||||||| |||||||||||||| Sbjct: 73113 cacacacacacacaatgcatgcat 73090
>gb|AC120163.10| Mus musculus chromosome 15, clone RP24-466O11, complete sequence Length = 129237 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 gaaaggagaggagaggagat 427 |||||||||||||||||||| Sbjct: 14435 gaaaggagaggagaggagat 14416
>gb|K01223.1|APLNP Aplysia (marine gastropod mollusc) neuropeptide mRNA Length = 1220 Score = 40.1 bits (20), Expect = 5.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 27 ttatttatttttgtcacatcacagcacacaca 58 |||||||||| || | |||||||||||||||| Sbjct: 1183 ttatttatttgtgacgcatcacagcacacaca 1152
>emb|AL645753.11| Mouse DNA sequence from clone CT7-315N12 on chromosome 3, complete sequence Length = 145594 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 79235 tgaaaggagaggagaggaga 79216
>emb|AL691425.6| Mouse DNA sequence from clone RP23-232E4 on chromosome 3, complete sequence Length = 42679 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 tgaaaggagaggagaggaga 426 |||||||||||||||||||| Sbjct: 15044 tgaaaggagaggagaggaga 15025 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,444,167 Number of Sequences: 3902068 Number of extensions: 4444167 Number of successful extensions: 242180 Number of sequences better than 10.0: 88 Number of HSP's better than 10.0 without gapping: 89 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 240896 Number of HSP's gapped (non-prelim): 1282 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
