ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32c06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synth... 204 2e-49
2dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
3dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
4dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
5gb|AY108751.1| Zea mays PCO143366 mRNA sequence 117 3e-23
6gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome... 74 4e-10
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 74 4e-10
8ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G5182... 70 7e-09
9gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g... 70 7e-09
10gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthet... 70 7e-09
11emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1) 52 0.002
12gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembra... 52 0.002
13gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll s... 52 0.002
14gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, com... 46 0.098
15gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete g... 42 1.5
16gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome 42 1.5
17gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 ... 40 6.0
18ref|XM_581056.2| PREDICTED: Bos taurus similar to carnitine defi... 40 6.0
19gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosom... 40 6.0
20emb|AL450336.7| Human DNA sequence from clone RP11-24C14 on chro... 40 6.0
21emb|AL360093.11| Human DNA sequence from clone RP11-135J2 on chr... 40 6.0
22emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 ... 40 6.0
23dbj|AK052704.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 40 6.0
24gb|AC154610.3| Mus musculus BAC clone RP23-335A11 from chromosom... 40 6.0
25ref|NM_011307.1| Mus musculus retinoid X receptor interacting pr... 40 6.0
26emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in... 40 6.0
27emb|CR848841.19| Zebrafish DNA sequence from clone DKEY-202I12 i... 40 6.0
28gb|AC007687.17| Homo sapiens 3 BAC RP11-494H4 (Roswell Park Canc... 40 6.0
29gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequ... 40 6.0
30emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d... 40 6.0 
>emb|AJ277210.1|ASA277210 Avena sativa mRNA for chlorophyll synthase (chlG gene)
          Length = 1428

 Score =  204 bits (103), Expect = 2e-49
 Identities = 118/123 (95%)
 Strand = Plus / Minus

                                                                        
Query: 327  cgtcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcg 386
            ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 1139 cgtcagtggctggtcgccagggcggtaaccagcaggccgaagacgaagaacggttgcgcg 1080

                                                                        
Query: 387  ctcgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgcaag 446
            ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1079 ctcgcctggtatttgacatcgtacttcacagggtccttcaggaagtactggaactgcaag 1020

               
Query: 447  atc 449
            |||
Sbjct: 1019 atc 1017
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>dbj|AK099004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013108A17, full
            insert sequence
          Length = 1599

 Score =  133 bits (67), Expect = 5e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                        
Query: 329  tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 388
            |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1162 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 1103

                                                                       
Query: 389  cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgcaaga 447
             ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 1102 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgaaaga 1044
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>dbj|AK068855.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169I11, full
            insert sequence
          Length = 1672

 Score =  133 bits (67), Expect = 5e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                        
Query: 329  tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 388
            |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1210 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 1151

                                                                       
Query: 389  cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgcaaga 447
             ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 1150 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgaaaga 1092
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>dbj|AK060912.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F12, full
           insert sequence
          Length = 1073

 Score =  133 bits (67), Expect = 5e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                       
Query: 329 tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 388
           |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 539 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 480

                                                                      
Query: 389 cgcctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgcaaga 447
            ||||||||||||||||| ||||||||||||||||| |||||||| || ||||| ||||
Sbjct: 479 tgcctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgaaaga 421
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>gb|AY108751.1| Zea mays PCO143366 mRNA sequence
          Length = 927

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                       
Query: 333 tggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgctcgcc 392
           |||||||| ||||| || || ||||||||||| |  |||||||||||||| ||||| |||
Sbjct: 553 tggctggttgccagtgctgtcaccagtaggcccagtacgaagaatggttgtgcgcttgcc 494

                                                                  
Query: 393 tggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgcaaga 447
           || |||||||| || ||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 493 tgatatttgacatcatacttcacagggtccttcaggaagtactggaactgaaaga 439
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>gb|AC136221.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0077J17, complete sequence
          Length = 141598

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                  
Query: 391   cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 443
             |||||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 21987 cctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgc 21935



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                         
Query: 329   tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 388
             |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 22180 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 22121

                   
Query: 389   cgcctg 394
              |||||
Sbjct: 22120 tgcctg 22115
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                     
Query: 391      cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgc 443
                |||||||||||||||| ||||||||||||||||| |||||||| || ||||||
Sbjct: 16381550 cctggtatttgacgtcatacttcacagggtccttgaggaagtattggaactgc 16381498



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                            
Query: 329      tcagtggctggtcgccagggcagtaaccagtaggccgaagacgaagaatggttgcgcgct 388
                |||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 16381743 tcagtggctggttgcaagggcggtcaccagaaggcccaagacgaagaacggttgcgcgct 16381684

                      
Query: 389      cgcctg 394
                 |||||
Sbjct: 16381683 tgcctg 16381678
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>ref|NM_115041.2| Arabidopsis thaliana prenyltransferase AT3G51820 mRNA, complete cds
          Length = 1578

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 372  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 431
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1237 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1178

                       
Query: 432  tactgaaactg 442
            || | ||||||
Sbjct: 1177 tatttaaactg 1167
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>gb|AY081481.1| Arabidopsis thaliana chlorophyll synthetase (At3g51820) mRNA,
            complete cds
          Length = 1203

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 372  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 431
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1121 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1062

                       
Query: 432  tactgaaactg 442
            || | ||||||
Sbjct: 1061 tatttaaactg 1051
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>gb|AY042821.1| Arabidopsis thaliana putative chlorophyll synthetase (At3g51820)
            mRNA, complete cds
          Length = 1458

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 62/71 (87%)
 Strand = Plus / Minus

                                                                        
Query: 372  aagaatggttgcgcgctcgcctggtatttgacgtcgtacttcacagggtccttcaggaag 431
            |||||||| |||||||| |||||||| ||||||||||| || ||||||||||| || |||
Sbjct: 1237 aagaatggctgcgcgcttgcctggtacttgacgtcgtatttgacagggtccttgagaaag 1178

                       
Query: 432  tactgaaactg 442
            || | ||||||
Sbjct: 1177 tatttaaactg 1167
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>emb|Z11158.1|ATEM1 A.thaliana Em protein gene (ATEM1)
          Length = 3541

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                  
Query: 391  cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgca 444
            ||||||| ||||||||||| || ||||||||||| || ||||| | ||||||||
Sbjct: 3298 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgca 3351
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>gb|AF049236.1|AF049236 Arabidopsis thaliana putative transmembrane protein G1p (AtG1),
             putative nuclear DNA-binding protein G2p (AtG2), Em1
             protein (ATEM1), putative chlorophyll synthetase (AtG4),
             putative transmembrane protein G5p (AtG5), putative
             acyl-coA dehydrogenase (AtG6), and calcium dependent
             protein kinase genes, complete cds; and unknown genes
          Length = 60000

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Plus

                                                                   
Query: 391   cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgca 444
             ||||||| ||||||||||| || ||||||||||| || ||||| | ||||||||
Sbjct: 18837 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgca 18890
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>gb|U19382.1|ATU19382 Arabidopsis thaliana putative chlorophyll synthetase (G4) gene,
            complete cds
          Length = 3660

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                  
Query: 391  cctggtatttgacgtcgtacttcacagggtccttcaggaagtactgaaactgca 444
            ||||||| ||||||||||| || ||||||||||| || ||||| | ||||||||
Sbjct: 2889 cctggtacttgacgtcgtatttgacagggtccttgagaaagtatttaaactgca 2836
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>gb|AC093349.6| Mus musculus chromosome 19, clone RP23-16C14, complete sequence
          Length = 227274

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 1      attttgaagaaaaaaatgcactt 23
              |||||||||||||||||||||||
Sbjct: 111312 attttgaagaaaaaaatgcactt 111290
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>gb|AE016827.1| Mannheimia succiniciproducens MBEL55E, complete genome
          Length = 2314078

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 1       attttgaagaaaaaaatgcac 21
               |||||||||||||||||||||
Sbjct: 1015222 attttgaagaaaaaaatgcac 1015202
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>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome
          Length = 2932766

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 384     gcgctcgcctggtatttgacgtcgt 408
               ||||| |||||||||||||||||||
Sbjct: 2152796 gcgctggcctggtatttgacgtcgt 2152772
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>gb|AE013059.1| Thermoanaerobacter tengcongensis MB4, section 86 of 244 of the
            complete genome
          Length = 9205

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  tacaggtacagcagcagaag 178
            ||||||||||||||||||||
Sbjct: 1380 tacaggtacagcagcagaag 1399
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>ref|XM_581056.2| PREDICTED: Bos taurus similar to carnitine deficiency-associated gene
            expressed in ventricle 3 isoform CDV3B (LOC504871), mRNA
          Length = 2823

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 9    gaaaaaaatgcacttttcag 28
            ||||||||||||||||||||
Sbjct: 2531 gaaaaaaatgcacttttcag 2512
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>gb|AC140331.2| Mus musculus BAC clone RP23-406J20 from chromosome 13, complete
             sequence
          Length = 192473

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 245   cttattccactaactgtgtt 264
             ||||||||||||||||||||
Sbjct: 84523 cttattccactaactgtgtt 84542
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>emb|AL450336.7| Human DNA sequence from clone RP11-24C14 on chromosome 6, complete
             sequence
          Length = 125507

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     attttgaagaaaaaaatgca 20
             ||||||||||||||||||||
Sbjct: 63052 attttgaagaaaaaaatgca 63071
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>emb|AL360093.11| Human DNA sequence from clone RP11-135J2 on chromosome 1 Contains the
             LYPLAL1 gene for lysophospholipase-like protein 1, a novel
             pseudogene (KIAA1238) and a novel transcript, complete
             sequence
          Length = 141156

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     agaaaaaaatgcacttttca 27
             ||||||||||||||||||||
Sbjct: 50652 agaaaaaaatgcacttttca 50671
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>emb|BX294178.13| Zebrafish DNA sequence from clone CH211-271C18 in linkage group 7,
             complete sequence
          Length = 131441

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ttgaagaaaaaaatgcacttttca 27
             |||||||||||||||||| |||||
Sbjct: 26765 ttgaagaaaaaaatgcacatttca 26742
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>dbj|AK052704.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
            library, clone:D630032M02 product:retinoid X receptor
            interacting protein 110, full insert sequence
          Length = 2932

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    attttgaagaaaaaaatgca 20
            ||||||||||||||||||||
Sbjct: 2908 attttgaagaaaaaaatgca 2889
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>gb|AC154610.3| Mus musculus BAC clone RP23-335A11 from chromosome 13, complete
             sequence
          Length = 201893

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     attttgaagaaaaaaatgca 20
             ||||||||||||||||||||
Sbjct: 84884 attttgaagaaaaaaatgca 84865
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>ref|NM_011307.1| Mus musculus retinoid X receptor interacting protein 110 (Rxrip110),
            mRNA
          Length = 2932

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    attttgaagaaaaaaatgca 20
            ||||||||||||||||||||
Sbjct: 2908 attttgaagaaaaaaatgca 2889
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>emb|BX005202.14| Zebrafish DNA sequence from clone DKEY-224N5 in linkage group 13,
             complete sequence
          Length = 220733

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 4     ttgaagaaaaaaatgcacttttca 27
             |||||||||||||||||| |||||
Sbjct: 37645 ttgaagaaaaaaatgcacatttca 37622
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>emb|CR848841.19| Zebrafish DNA sequence from clone DKEY-202I12 in linkage group 16,
             complete sequence
          Length = 205755

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     attttgaagaaaaaaatgca 20
             ||||||||||||||||||||
Sbjct: 11010 attttgaagaaaaaaatgca 11029
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>gb|AC007687.17| Homo sapiens 3 BAC RP11-494H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 163650

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 2      ttttgaagaaaaaaatgcactttt 25
              |||||||||||||||||| |||||
Sbjct: 129554 ttttgaagaaaaaaatgccctttt 129577
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>gb|CP000020.1| Vibrio fischeri ES114 chromosome I, complete sequence
          Length = 2906179

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 2       ttttgaagaaaaaaatgcac 21
               ||||||||||||||||||||
Sbjct: 1028238 ttttgaagaaaaaaatgcac 1028219
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>emb|CT573076.1| Medicago truncatula chromosome 5 clone mth2-181d5, COMPLETE SEQUENCE
          Length = 89591

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     attttgaagaaaaaaatgca 20
             ||||||||||||||||||||
Sbjct: 19399 attttgaagaaaaaaatgca 19380


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,709,016
Number of Sequences: 3902068
Number of extensions: 3709016
Number of successful extensions: 80444
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80357
Number of HSP's gapped (non-prelim): 87
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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