>NKX25_HUMAN (P52952) Homeobox protein Nkx-2.5 (Homeobox protein NK-2 homolog E)|
           (Cardiac-specific homeobox) (Homeobox protein CSX)
          Length = 324

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 335 SSWPAYPGYAPLPYTPGHAVAASSGASRSP 424
           +++PAYPGY     +PG++  A+  A  SP
Sbjct: 251 NAYPAYPGYGGAACSPGYSCTAAYPAGPSP 280

>PRDM1_HUMAN (O75626) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1) (Positive regulatory
           domain I-binding factor 1) (PRDI-binding factor 1)
           (PRDI-BF1)
          Length = 789

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 381 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 268
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 346 GTEGLGSYPGYAPLPHLPPAFIPSYNAHYP---KFLLP 380

>PRDM1_MOUSE (Q60636) PR domain zinc finger protein 1 (PR domain-containing|
           protein 1) (Beta-interferon gene positive-regulatory
           domain I-binding factor) (BLIMP-1)
          Length = 856

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/38 (47%), Positives = 21/38 (55%)
 Frame = -2

Query: 381 GVYGKGAYPGYAGQLLVDGATGASYNAHGAHGRKYLLP 268
           G  G G+YPGYA    +  A   SYNAH     K+LLP
Sbjct: 414 GSEGLGSYPGYAPAPHLPPAFIPSYNAHYP---KFLLP 448

>CO9A2_MOUSE (Q07643) Collagen alpha-2(IX) chain precursor|
          Length = 688

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 295 AVGVVTRSGGPVHQQLAGVPG 357
           + G V R G P HQ LAGVPG
Sbjct: 319 SAGQVGRPGSPGHQGLAGVPG 339

>BETT_ECOLI (P0ABC9) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 105 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 245
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>BETT_ECO57 (P0ABD0) High-affinity choline transport protein|
          Length = 677

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 105 IYTYMHYSTTSCTQYSLARWAASGFDSLHLSLPLCRRTSPTPAWSRR 245
           ++T  HY  T  + Y+L   A  G+ S   +LPL  R++  P + +R
Sbjct: 140 VWTLFHYGLTGWSMYALMGMAL-GYFSYRYNLPLTIRSALYPIFGKR 185

>YK61_CAEEL (P34340) Putative cuticle collagen C29E4.1|
          Length = 305

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = -2

Query: 426 QGEREAPLEAATACPGVYGKGAYPGYAGQLLVDGATGASYN 304
           Q   E P + A   PG  G+ AYPG  G+    GA G   N
Sbjct: 233 QDGEEGP-KGAPGTPGSNGRDAYPGQPGKAGEPGAVGKDAN 272


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,004,272
Number of Sequences: 219361
Number of extensions: 904324
Number of successful extensions: 3002
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2998
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)