ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32c04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Plus Query: 224 tacaccagcgtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttc 283 ||||| ||||||||||||||||| ||| ||||||| || |||||||| || ||||| ||| Sbjct: 6191263 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 6191322 Query: 284 ctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctgg 343 | |||||||||||||| |||||||| || || ||||||||| ||||||||||||| | Sbjct: 6191323 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 6191382 Query: 344 ccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctcc 403 |||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct: 6191383 ccggcgtagcccgggtacgcgcccttgccgtacacgcccgtgcacgccgtcgcggcctcc 6191442 Query: 404 agcggcgcctcgcgctccccctggtagaac 433 |||| ||| |||||||||||||||||||| Sbjct: 6191443 agcgccgcgccgcgctccccctggtagaac 6191472 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgccggcagcaggtacttcc 284 |||||||||||||||||||| Sbjct: 6189005 cgccggcagcaggtacttcc 6189024
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Plus Query: 224 tacaccagcgtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttc 283 ||||| ||||||||||||||||| ||| ||||||| || |||||||| || ||||| ||| Sbjct: 105082 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 105141 Query: 284 ctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctgg 343 | |||||||||||||| |||||||| || || ||||||||| ||||||||||||| | Sbjct: 105142 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 105201 Query: 344 ccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctcc 403 |||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct: 105202 ccggcgtagcccgggtacgcgcccttgccgtacacgcccgtgcacgccgtcgcggcctcc 105261 Query: 404 agcggcgcctcgcgctccccctggtagaac 433 |||| ||| |||||||||||||||||||| Sbjct: 105262 agcgccgcgccgcgctccccctggtagaac 105291 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 265 cgccggcagcaggtacttcc 284 |||||||||||||||||||| Sbjct: 102824 cgccggcagcaggtacttcc 102843
>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence Length = 962 Score = 218 bits (110), Expect = 1e-53 Identities = 185/210 (88%) Strand = Plus / Minus Query: 224 tacaccagcgtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttc 283 ||||| ||||||||||||||||| ||| ||||||| || |||||||| || ||||| ||| Sbjct: 851 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 792 Query: 284 ctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctgg 343 | |||||||||||||| |||||||| || || ||||||||| ||||||||||||| | Sbjct: 791 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 732 Query: 344 ccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctcc 403 |||||||| || ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct: 731 ccggcgtagcccgggtacgcgcccttgccgtacacgcccgtgcacgccgtcgcggcctcc 672 Query: 404 agcggcgcctcgcgctccccctggtagaac 433 |||| ||| |||||||||||||||||||| Sbjct: 671 agcgccgcgccgcgctccccctggtagaac 642
>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full insert sequence Length = 837 Score = 210 bits (106), Expect = 3e-51 Identities = 184/210 (87%) Strand = Plus / Plus Query: 224 tacaccagcgtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttc 283 ||||| ||||||||||||||||| ||| ||||||| || |||||||| || ||||| ||| Sbjct: 40 tacacgagcgtggagcaggcggacgtgtcggggtcgaagagcgccgggaggaggtatttc 99 Query: 284 ctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctgg 343 | |||||||||||||| |||||||| || || ||||||||| ||||||||||||| | Sbjct: 100 cggccgtgcgcgccgtgcgcgttgtagctggcgccggtggccttgtccaccagcagcgcg 159 Query: 344 ccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctcc 403 ||||| || || ||||||||||||||||||||||| |||| ||||||||||||||||||| Sbjct: 160 ccggcctagcccgggtacgcgcccttgccgtacacgcccgtgcacgccgtcgcggcctcc 219 Query: 404 agcggcgcctcgcgctccccctggtagaac 433 |||| ||| |||||||||||||||||||| Sbjct: 220 agcgccgcgccgcgctccccctggtagaac 249
>gb|AY105815.1| Zea mays PCO102946 mRNA sequence Length = 1238 Score = 121 bits (61), Expect = 2e-24 Identities = 127/149 (85%) Strand = Plus / Minus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 |||||||| | |||||||||||||||||| || |||| ||| ||| | || || ||| || Sbjct: 996 agcgccgggaccaggtacttcctcccgtgggccccgttggcattgaagctggccccgctg 937 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| ||| ||||||||| ||| ||||| |||||||||||||||||||||||||| || Sbjct: 936 gcctggtctaccagcagcgagccagcgtagccggggtacgcgcccttgccgtacacgccg 877 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 | ||||||||| ||||||||||||||||| Sbjct: 876 gcgcacgccgtggcggcctccagcggcgc 848
>gb|AF325723.1|AF325723 Pennisetum ciliare phosphate-induced protein 1-like protein mRNA, complete cds Length = 1160 Score = 113 bits (57), Expect = 5e-22 Identities = 126/149 (84%) Strand = Plus / Minus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 |||||||| | ||||||||||||||| || || |||| ||| ||| | || || ||| || Sbjct: 989 agcgccgggaccaggtacttcctcccatgggccccgttggcattgaagctggccccgctg 930 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| ||||||||||||| || ||||| |||||||||||||||||||||||||| || Sbjct: 929 gcctggtccaccagcagcgaccccgcgtagccggggtacgcgcccttgccgtacacgccg 870 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 | ||||||||| ||||||||||||||||| Sbjct: 869 gcgcacgccgtggcggcctccagcggcgc 841
>ref|XM_467879.1| Oryza sativa (japonica cultivar-group), mRNA Length = 936 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 233 gtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttcctcccgtgc 292 ||||||||||| || ||| ||||||| | |||||||| | |||||| |||||||||||| Sbjct: 926 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 867 Query: 293 gcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtac 352 || || | |||||||| || || ||| ||||| ||||||||||||| || ||||| Sbjct: 866 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagcgacccagcgtaa 807 Query: 353 ccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgc 411 || |||||||| |||||||||||||| || | |||||| || ||||||||||||||||| Sbjct: 806 cccgggtacgcccccttgccgtacactccggcgcacgcggtggcggcctccagcggcgc 748
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 233 gtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttcctcccgtgc 292 ||||||||||| || ||| ||||||| | |||||||| | |||||| |||||||||||| Sbjct: 31870943 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31870884 Query: 293 gcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtac 352 || || | |||||||| || || ||| ||||| ||||||||||||| || ||||| Sbjct: 31870883 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagcgacccagcgtaa 31870824 Query: 353 ccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgc 411 || |||||||| |||||||||||||| || | |||||| || ||||||||||||||||| Sbjct: 31870823 cccgggtacgcccccttgccgtacactccggcgcacgcggtggcggcctccagcggcgc 31870765 Score = 105 bits (53), Expect = 1e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 266 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggcc 325 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct: 31859244 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 31859303 Query: 326 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 385 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 31859304 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 31859363 Query: 386 cacgccgtcgcggcctccagcggcgcctc 414 ||||||||||||||||||||||||||||| Sbjct: 31859364 cacgccgtcgcggcctccagcggcgcctc 31859392 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Plus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 31842764 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 31842823 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 31842824 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 31842883 Query: 385 gcacgccg 392 |||||||| Sbjct: 31842884 gcacgccg 31842891 Score = 73.8 bits (37), Expect = 4e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 ||||| || |||||||| |||||||||| |||||| | |||||| || || || ||||| Sbjct: 31853826 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 31853885 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 31853886 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 31853945 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 ||||||||||| ||||||||||||||||| Sbjct: 31853946 gggcacgccgtggcggcctccagcggcgc 31853974
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 233 gtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttcctcccgtgc 292 ||||||||||| || ||| ||||||| | |||||||| | |||||| |||||||||||| Sbjct: 31944 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 31885 Query: 293 gcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtac 352 || || | |||||||| || || ||| ||||| ||||||||||||| || ||||| Sbjct: 31884 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagcgacccagcgtaa 31825 Query: 353 ccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgc 411 || |||||||| |||||||||||||| || | |||||| || ||||||||||||||||| Sbjct: 31824 cccgggtacgcccccttgccgtacactccggcgcacgcggtggcggcctccagcggcgc 31766 Score = 105 bits (53), Expect = 1e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 266 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggcc 325 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct: 20245 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 20304 Query: 326 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 385 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 20305 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 20364 Query: 386 cacgccgtcgcggcctccagcggcgcctc 414 ||||||||||||||||||||||||||||| Sbjct: 20365 cacgccgtcgcggcctccagcggcgcctc 20393 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Plus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 3765 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 3824 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 3825 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 3884 Query: 385 gcacgccg 392 |||||||| Sbjct: 3885 gcacgccg 3892 Score = 73.8 bits (37), Expect = 4e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 ||||| || |||||||| |||||||||| |||||| | |||||| || || || ||||| Sbjct: 14827 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 14886 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 14887 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 14946 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 ||||||||||| ||||||||||||||||| Sbjct: 14947 gggcacgccgtggcggcctccagcggcgc 14975
>dbj|AK070419.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049J22, full insert sequence Length = 1187 Score = 109 bits (55), Expect = 8e-21 Identities = 148/179 (82%) Strand = Plus / Minus Query: 233 gtggagcaggcggaggtggcggggtcaaacagcgccggcagcaggtacttcctcccgtgc 292 ||||||||||| || ||| ||||||| | |||||||| | |||||| |||||||||||| Sbjct: 991 gtggagcaggccgacgtgtcggggtctacgagcgccgggaccaggtatttcctcccgtgc 932 Query: 293 gcgccgtgggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtac 352 || || | |||||||| || || ||| ||||| ||||||||||||| || ||||| Sbjct: 931 gccccattcgcgttgtagctggccccgctggccgggtccaccagcagcgacccagcgtaa 872 Query: 353 ccggggtacgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgc 411 || |||||||| |||||||||||||| || | |||||| || ||||||||||||||||| Sbjct: 871 cccgggtacgcccccttgccgtacactccggcgcacgcggtggcggcctccagcggcgc 813
>ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 105 bits (53), Expect = 1e-19 Identities = 125/149 (83%) Strand = Plus / Minus Query: 266 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggcc 325 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct: 1018 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 959 Query: 326 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 385 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 958 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 899 Query: 386 cacgccgtcgcggcctccagcggcgcctc 414 ||||||||||||||||||||||||||||| Sbjct: 898 cacgccgtcgcggcctccagcggcgcctc 870
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 105 bits (53), Expect = 1e-19 Identities = 125/149 (83%) Strand = Plus / Plus Query: 266 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggcc 325 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct: 155042 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 155101 Query: 326 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 385 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 155102 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 155161 Query: 386 cacgccgtcgcggcctccagcggcgcctc 414 ||||||||||||||||||||||||||||| Sbjct: 155162 cacgccgtcgcggcctccagcggcgcctc 155190 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Plus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 138562 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 138621 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 138622 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 138681 Query: 385 gcacgccg 392 |||||||| Sbjct: 138682 gcacgccg 138689 Score = 73.8 bits (37), Expect = 4e-10 Identities = 121/149 (81%) Strand = Plus / Plus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 ||||| || |||||||| |||||||||| |||||| | |||||| || || || ||||| Sbjct: 149624 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 149683 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 149684 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 149743 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 ||||||||||| ||||||||||||||||| Sbjct: 149744 gggcacgccgtggcggcctccagcggcgc 149772
>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence Length = 1222 Score = 105 bits (53), Expect = 1e-19 Identities = 125/149 (83%) Strand = Plus / Minus Query: 266 gccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggcc 325 ||||| |||||||| ||||||||||| || || | ||||||||| |||||||| || || Sbjct: 1018 gccggaagcaggtatttcctcccgtgtgctccattggcgttgtagctcgctcccgtcgcg 959 Query: 326 ccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccggg 385 ||||||| ||| | ||||| || ||||||||||| || ||||||| |||||||| Sbjct: 958 gggtccaccgccaggttcccggcataaccggggtacgcaccgctgccgtagacccccgga 899 Query: 386 cacgccgtcgcggcctccagcggcgcctc 414 ||||||||||||||||||||||||||||| Sbjct: 898 cacgccgtcgcggcctccagcggcgcctc 870
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Minus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 992 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 933 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 932 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 873 Query: 385 gcacgccg 392 |||||||| Sbjct: 872 gcacgccg 865
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Minus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 990 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 931 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 930 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 871 Query: 385 gcacgccg 392 |||||||| Sbjct: 870 gcacgccg 863
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 87.7 bits (44), Expect = 3e-14 Identities = 107/128 (83%) Strand = Plus / Minus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggc 324 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 990 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggt 931 Query: 325 cccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacacccccgg 384 |||| || || || | ||||||| ||| ||||||||||| ||||||| || ||||| Sbjct: 930 ggcgtcgacgaggagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgg 871 Query: 385 gcacgccg 392 |||||||| Sbjct: 870 gcacgccg 863
>ref|XM_483034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 924 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 301 ggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtacccggggta 360 ||||||||| || || |||||||| |||||||| |||||||||||| |||||| ||||| Sbjct: 637 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 578 Query: 361 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgcctcg 415 ||||| |||| ||| ||||| ||| |||||| | |||||||||||||||||| Sbjct: 577 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctccagcggcgcctcg 523
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 301 ggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtacccggggta 360 ||||||||| || || |||||||| |||||||| |||||||||||| |||||| ||||| Sbjct: 23962452 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 23962511 Query: 361 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgcctcg 415 ||||| |||| ||| ||||| ||| |||||| | |||||||||||||||||| Sbjct: 23962512 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctccagcggcgcctcg 23962566
>dbj|AP005918.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0419H09 Length = 143533 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Plus Query: 301 ggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtacccggggta 360 ||||||||| || || |||||||| |||||||| |||||||||||| |||||| ||||| Sbjct: 95603 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 95662 Query: 361 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgcctcg 415 ||||| |||| ||| ||||| ||| |||||| | |||||||||||||||||| Sbjct: 95663 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctccagcggcgcctcg 95717
>dbj|AK073011.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023145I01, full insert sequence Length = 922 Score = 85.7 bits (43), Expect = 1e-13 Identities = 97/115 (84%) Strand = Plus / Minus Query: 301 ggcgttgtaactcgctccggtggccccgtccaccagcagctggccggcgtacccggggta 360 ||||||||| || || |||||||| |||||||| |||||||||||| |||||| ||||| Sbjct: 635 ggcgttgtagctggcgccggtggcggcgtccaccggcagctggccggggtaccccgggta 576 Query: 361 cgcgcccttgccgtacacccccgggcacgccgtcgcggcctccagcggcgcctcg 415 ||||| |||| ||| ||||| ||| |||||| | |||||||||||||||||| Sbjct: 575 ggcgccggcgccgaacatccccgtgcaggccgtcaccgcctccagcggcgcctcg 521
>ref|XM_467876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1193 Score = 73.8 bits (37), Expect = 4e-10 Identities = 121/149 (81%) Strand = Plus / Minus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 ||||| || |||||||| |||||||||| |||||| | |||||| || || || ||||| Sbjct: 1021 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 962 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 961 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 902 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 ||||||||||| ||||||||||||||||| Sbjct: 901 gggcacgccgtggcggcctccagcggcgc 873
>dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F03, full insert sequence Length = 1193 Score = 73.8 bits (37), Expect = 4e-10 Identities = 121/149 (81%) Strand = Plus / Minus Query: 263 agcgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtg 322 ||||| || |||||||| |||||||||| |||||| | |||||| || || || ||||| Sbjct: 1021 agcgcgggaagcaggtatttcctcccgttcgcgccattggcgttatagcttgccccggtc 962 Query: 323 gccccgtccaccagcagctggccggcgtacccggggtacgcgcccttgccgtacaccccc 382 ||| |||||| ||||| |||||| | || ||||||||||| | ||| | || ||| Sbjct: 961 gcctgatccaccttcagctcaccggcgaatccagggtacgcgccgctcccgaagactccc 902 Query: 383 gggcacgccgtcgcggcctccagcggcgc 411 ||||||||||| ||||||||||||||||| Sbjct: 901 gggcacgccgtggcggcctccagcggcgc 873
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 277 gtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccag 336 ||||||||||| || |||||||| ||||||||| || |||||||||| |||| || || Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggtggcgtcgacgag 920 Query: 337 cagctggccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccg 392 || | ||||||| ||| ||||||||||| ||||||| || ||||||||||||| Sbjct: 919 gagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgggcacgccg 864
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 71.9 bits (36), Expect = 2e-09 Identities = 96/116 (82%) Strand = Plus / Minus Query: 277 gtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtggccccgtccaccag 336 ||||||||||| || |||||||| ||||||||| || |||||||||| |||| || || Sbjct: 979 gtacttcctcctgttcgcgccgttggcgttgtagctggctccggtggtggcgtcgacgag 920 Query: 337 cagctggccggcgtacccggggtacgcgcccttgccgtacacccccgggcacgccg 392 || | ||||||| ||| ||||||||||| ||||||| || ||||||||||||| Sbjct: 919 gagtttaccggcgttccccgggtacgcgccgctgccgtagactcccgggcacgccg 864
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 69.9 bits (35), Expect = 7e-09 Identities = 53/59 (89%) Strand = Plus / Minus Query: 265 cgccggcagcaggtacttcctcccgtgcgcgccgtgggcgttgtaactcgctccggtgg 323 |||||| |||||||||||||||| || |||||||| ||||||||| || |||||||||| Sbjct: 991 cgccgggagcaggtacttcctcctgttcgcgccgttggcgttgtagctggctccggtgg 933
>ref|NM_196156.1| Oryza sativa (japonica cultivar-group) putative phosphate-induced protein (OSJNBa0095C06.7), mRNA Length = 1005 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 gggtacgcgcccttgccgtacacccccgggcacgc 390 ||||||||||| ||||||||||||||||||||| Sbjct: 872 gggtacgcgccgcggccgtacacccccgggcacgc 838
>gb|AC079935.3| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OSJNBa0095C06, from Chromosome 10, complete sequence Length = 156159 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 gggtacgcgcccttgccgtacacccccgggcacgc 390 ||||||||||| ||||||||||||||||||||| Sbjct: 58756 gggtacgcgccgcggccgtacacccccgggcacgc 58722
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 gggtacgcgcccttgccgtacacccccgggcacgc 390 ||||||||||| ||||||||||||||||||||| Sbjct: 11474763 gggtacgcgccgcggccgtacacccccgggcacgc 11474729
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 46.1 bits (23), Expect = 0.094 Identities = 32/35 (91%) Strand = Plus / Minus Query: 356 gggtacgcgcccttgccgtacacccccgggcacgc 390 ||||||||||| ||||||||||||||||||||| Sbjct: 11481203 gggtacgcgccgcggccgtacacccccgggcacgc 11481169
>ref|NM_188039.1| Oryza sativa (japonica cultivar-group), Ozsa8459 predicted mRNA Length = 291 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cagcggcgcctcgcgctcccc 423 ||||||||||||||||||||| Sbjct: 154 cagcggcgcctcgcgctcccc 174
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 acaaaggctgatttacatttt 60 ||||||||||||||||||||| Sbjct: 1738417 acaaaggctgatttacatttt 1738437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cagcggcgcctcgcgctcccc 423 ||||||||||||||||||||| Sbjct: 9286334 cagcggcgcctcgcgctcccc 9286354
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0667A10 Length = 152237 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 403 cagcggcgcctcgcgctcccc 423 ||||||||||||||||||||| Sbjct: 62928 cagcggcgcctcgcgctcccc 62948
>ref|NM_189865.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1875 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggagcaggcggaggtggcgg 254 |||||||||||||||||||| Sbjct: 178 ggagcaggcggaggtggcgg 159
>ref|XM_600477.2| PREDICTED: Bos taurus similar to Muscle-cadherin precursor (M-cadherin) (Cadherin-15) (Cadherin-14) (LOC522202), mRNA Length = 3264 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 317 ccggtggccccgtccaccagcagc 340 |||||||||||||||||| ||||| Sbjct: 1805 ccggtggccccgtccacctgcagc 1782
>ref|XM_542202.2| PREDICTED: Canis familiaris similar to adenomatosis polyposis coli 2 (LOC485084), mRNA Length = 7620 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 324 ccccgtccaccagcagctgg 343 |||||||||||||||||||| Sbjct: 460 ccccgtccaccagcagctgg 441
>emb|BX004881.17| Zebrafish DNA sequence from clone CH211-141M16 in linkage group 13, complete sequence Length = 189908 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aatacagtttggctagatgg 164 |||||||||||||||||||| Sbjct: 93966 aatacagtttggctagatgg 93947
>emb|AL132825.35|HSDJ756N5 Human DNA sequence from clone RP4-756N5 on chromosome 20q11.21-12 Contains the MYH7B gene for myosin heavy polypeptide 7B (cardiac muscle) beta, the C20orf188 gene for a novel protein similar to Trp4-associated protein TAP1 (ABCB2) and two CpG islands, complete sequence Length = 123782 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 21 tactccatttgtgcaaagta 40 |||||||||||||||||||| Sbjct: 47025 tactccatttgtgcaaagta 47044
>gb|AY907537.1| Uncultured bacterial symbiont of Discodermia dissoluta polyketide synthesis gene cluster, partial sequence Length = 124311 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 228 ccagcgtggagcaggcggaggtgg 251 |||||||||||| ||||||||||| Sbjct: 36765 ccagcgtggagccggcggaggtgg 36788
>emb|AJ557546.1|MLI557546 Melittangium lichenicola melithiazol gene cluster Length = 51855 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggagcaggcggaggtggcgg 254 |||||||||||||||||||| Sbjct: 25240 ggagcaggcggaggtggcgg 25221
>emb|BX511227.7| Zebrafish DNA sequence from clone DKEY-100E19 in linkage group 14, complete sequence Length = 262038 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 ctgatttacattttttattt 66 |||||||||||||||||||| Sbjct: 5871 ctgatttacattttttattt 5852
>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence Length = 113199 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 tgatttacattttttattta 67 |||||||||||||||||||| Sbjct: 45849 tgatttacattttttattta 45868
>ref|XM_694557.1| PREDICTED: Danio rerio similar to neurochondrin isoform 1 (LOC571005), partial mRNA Length = 1395 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 acagcgccggcagcaggtac 280 |||||||||||||||||||| Sbjct: 814 acagcgccggcagcaggtac 795
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggagcaggcggaggtggcgg 254 |||||||||||||||||||| Sbjct: 25618798 ggagcaggcggaggtggcgg 25618779
>dbj|AP004380.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0594D10 Length = 143200 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 ggagcaggcggaggtggcgg 254 |||||||||||||||||||| Sbjct: 72771 ggagcaggcggaggtggcgg 72752
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tactactagttgtacccaat 147 |||||||||||||||||||| Sbjct: 150700 tactactagttgtacccaat 150681
>emb|BX005175.8| Zebrafish DNA sequence from clone DKEY-14H17 in linkage group 11, complete sequence Length = 234851 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 gatttacattttttatttag 68 |||||||||||||||||||| Sbjct: 21220 gatttacattttttatttag 21201
>gb|BT024052.1| Zea mays clone EL01N0437G11 mRNA sequence Length = 1768 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 343 gccggcgtacccggggtacgcgcc 366 |||||||||| ||||||||||||| Sbjct: 1229 gccggcgtacgcggggtacgcgcc 1252
>dbj|AK058704.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C08, full insert sequence Length = 1268 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 cgccggcagcaggtacttcc 284 |||||||||||||||||||| Sbjct: 976 cgccggcagcaggtacttcc 957 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,493,792 Number of Sequences: 3902068 Number of extensions: 3493792 Number of successful extensions: 71245 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 70872 Number of HSP's gapped (non-prelim): 368 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
