Clone Name | rbart32b05 |
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Clone Library Name | barley_pub |
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 131 bits (66), Expect = 2e-27 Identities = 228/282 (80%), Gaps = 2/282 (0%) Strand = Plus / Minus Query: 115 tatcgacgacatgtcgatctacc-ccaaacaacgcaactccgactctgacgaaaaagtct 173 ||||||||||| ||||| |||| |||||||||||| |||||||||||||| | || | | Sbjct: 214490 tatcgacgacacgtcgacctacagccaaacaacgcagctccgactctgacggagaacttt 214431 Query: 174 gaaggccaaaaccaggcatggctggcgccacggaaaatcgctgaacgggctacctgcagc 233 | ||| |||||||||||| ||||||| ||||| | ||||| |||||||||| ||||||| Sbjct: 214430 gtaggacaaaaccaggcacggctggcaccacgaaggatcgccgaacgggctatctgcagc 214371 Query: 234 aagtcatcatatactgcagggcctcggcaccacagcttcgactccacaacaacaaacaat 293 ||||||| ||||| || |||| | | || |||||||||||||||| |||||||||| Sbjct: 214370 cagtcatcgtataccaca-ggcccctccgccgcagcttcgactccacagcaacaaacaaa 214312 Query: 294 tcgaggcaataacggggacacgccgnnnnnnnnctgaccaccgcaaccattaccgcgtca 353 |||||||| | | ||||||||| | ||| |||||||||||| |||||| Sbjct: 214311 gcgaggcaaaaccatagacacgccgaagaagagccgactaccgcaaccattgccgcgttg 214252 Query: 354 ccgacattgctcccaccatcatcattgccactcaagtctgga 395 ||||||| ||||||||| ||||| ||||||| ||||||||| Sbjct: 214251 ccgacatcgctcccaccctcatcgttgccacagaagtctgga 214210
>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence Length = 159930 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 cattgctcccaccatcatcat 378 ||||||||||||||||||||| Sbjct: 123667 cattgctcccaccatcatcat 123687
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 338 aaccattaccgcgtcaccgac 358 ||||||||||||||||||||| Sbjct: 2987602 aaccattaccgcgtcaccgac 2987622
>ref|NM_129836.2| Arabidopsis thaliana electron transporter/ heat shock protein binding / unfolded protein binding AT2G42750 mRNA, complete cds Length = 1393 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 429 tcattgccactcaagtctgga 409
>gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete sequence Length = 162638 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 cattgctcccaccatcatcat 378 ||||||||||||||||||||| Sbjct: 25566 cattgctcccaccatcatcat 25586
>gb|AY097391.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, complete cds Length = 1035 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 332 tcattgccactcaagtctgga 312
>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete sequence Length = 115310 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 87764 tcattgccactcaagtctgga 87784
>gb|AY069893.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, complete cds Length = 1292 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 389 tcattgccactcaagtctgga 369
>emb|BX820322.1|CNS0A8QN Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH22ZD04 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1227 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 360 tcattgccactcaagtctgga 340
>emb|BX820004.1|CNS0A8EP Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS5ZE09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1253 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 413 tcattgccactcaagtctgga 393
>gb|AY085558.1| Arabidopsis thaliana clone 15743 mRNA, complete sequence Length = 1326 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 375 tcattgccactcaagtctgga 395 ||||||||||||||||||||| Sbjct: 430 tcattgccactcaagtctgga 410
>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete sequence Length = 328128 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 358 cattgctcccaccatcatcat 378 ||||||||||||||||||||| Sbjct: 265280 cattgctcccaccatcatcat 265260
>dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60A24, complete sequence Length = 117502 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 acaacaacaaacaattcgagg 299 ||||||||||||||||||||| Sbjct: 65520 acaacaacaaacaattcgagg 65540
>gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromosome 7, complete sequence Length = 169275 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 actgcagggcctcggcacca 265 |||||||||||||||||||| Sbjct: 5808 actgcagggcctcggcacca 5827
>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence Length = 168794 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 caggcatggctggcgccacg 205 |||||||||||||||||||| Sbjct: 120783 caggcatggctggcgccacg 120764
>gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q21.1-q31.1, complete sequence Length = 103738 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 actgcagggcctcggcacca 265 |||||||||||||||||||| Sbjct: 82297 actgcagggcctcggcacca 82316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,737,993 Number of Sequences: 3902068 Number of extensions: 2737993 Number of successful extensions: 51725 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51686 Number of HSP's gapped (non-prelim): 38 length of query: 397 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 375 effective length of database: 17,147,199,772 effective search space: 6430199914500 effective search space used: 6430199914500 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)