ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 131 2e-27
2gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete... 42 1.3
3gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 42 1.3
4ref|NM_129836.2| Arabidopsis thaliana electron transporter/ heat... 42 1.3
5gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete... 42 1.3
6gb|AY097391.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, com... 42 1.3
7gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map... 42 1.3
8gb|AY069893.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, com... 42 1.3
9emb|BX820322.1|CNS0A8QN Arabidopsis thaliana Full-length cDNA Co... 42 1.3
10emb|BX820004.1|CNS0A8EP Arabidopsis thaliana Full-length cDNA Co... 42 1.3
11gb|AY085558.1| Arabidopsis thaliana clone 15743 mRNA, complete s... 42 1.3
12gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 ... 42 1.3
13dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.3
14gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromo... 40 5.3
15gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, comple... 40 5.3
16gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q2... 40 5.3

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  131 bits (66), Expect = 2e-27
 Identities = 228/282 (80%), Gaps = 2/282 (0%)
 Strand = Plus / Minus

                                                                          
Query: 115    tatcgacgacatgtcgatctacc-ccaaacaacgcaactccgactctgacgaaaaagtct 173
              ||||||||||| ||||| ||||  |||||||||||| |||||||||||||| | || | |
Sbjct: 214490 tatcgacgacacgtcgacctacagccaaacaacgcagctccgactctgacggagaacttt 214431

                                                                          
Query: 174    gaaggccaaaaccaggcatggctggcgccacggaaaatcgctgaacgggctacctgcagc 233
              | ||| |||||||||||| ||||||| ||||| |  ||||| |||||||||| |||||||
Sbjct: 214430 gtaggacaaaaccaggcacggctggcaccacgaaggatcgccgaacgggctatctgcagc 214371

                                                                          
Query: 234    aagtcatcatatactgcagggcctcggcaccacagcttcgactccacaacaacaaacaat 293
               ||||||| |||||  || |||| |  | || |||||||||||||||| |||||||||| 
Sbjct: 214370 cagtcatcgtataccaca-ggcccctccgccgcagcttcgactccacagcaacaaacaaa 214312

                                                                          
Query: 294    tcgaggcaataacggggacacgccgnnnnnnnnctgaccaccgcaaccattaccgcgtca 353
               |||||||| | |   |||||||||        | ||| |||||||||||| ||||||  
Sbjct: 214311 gcgaggcaaaaccatagacacgccgaagaagagccgactaccgcaaccattgccgcgttg 214252

                                                        
Query: 354    ccgacattgctcccaccatcatcattgccactcaagtctgga 395
              ||||||| ||||||||| ||||| |||||||  |||||||||
Sbjct: 214251 ccgacatcgctcccaccctcatcgttgccacagaagtctgga 214210



to top

>gb|AC154048.1| Drosophila melanogaster clone BACR29A04, complete sequence
          Length = 159930

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    cattgctcccaccatcatcat 378
              |||||||||||||||||||||
Sbjct: 123667 cattgctcccaccatcatcat 123687



to top

>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 338     aaccattaccgcgtcaccgac 358
               |||||||||||||||||||||
Sbjct: 2987602 aaccattaccgcgtcaccgac 2987622



to top

>ref|NM_129836.2| Arabidopsis thaliana electron transporter/ heat shock protein
           binding / unfolded protein binding AT2G42750 mRNA,
           complete cds
          Length = 1393

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 429 tcattgccactcaagtctgga 409



to top

>gb|AC154047.2| Drosophila melanogaster clone BACR26B05, complete sequence
          Length = 162638

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 358   cattgctcccaccatcatcat 378
             |||||||||||||||||||||
Sbjct: 25566 cattgctcccaccatcatcat 25586



to top

>gb|AY097391.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, complete cds
          Length = 1035

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 332 tcattgccactcaagtctgga 312



to top

>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete
             sequence
          Length = 115310

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 375   tcattgccactcaagtctgga 395
             |||||||||||||||||||||
Sbjct: 87764 tcattgccactcaagtctgga 87784



to top

>gb|AY069893.1| Arabidopsis thaliana At2g42750/F7D19.25 mRNA, complete cds
          Length = 1292

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 389 tcattgccactcaagtctgga 369



to top

>emb|BX820322.1|CNS0A8QN Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH22ZD04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1227

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 360 tcattgccactcaagtctgga 340



to top

>emb|BX820004.1|CNS0A8EP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS5ZE09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1253

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 413 tcattgccactcaagtctgga 393



to top

>gb|AY085558.1| Arabidopsis thaliana clone 15743 mRNA, complete sequence
          Length = 1326

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 375 tcattgccactcaagtctgga 395
           |||||||||||||||||||||
Sbjct: 430 tcattgccactcaagtctgga 410



to top

>gb|AE003486.2| Drosophila melanogaster chromosome X, section 38 of 74 of the complete
              sequence
          Length = 328128

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    cattgctcccaccatcatcat 378
              |||||||||||||||||||||
Sbjct: 265280 cattgctcccaccatcatcat 265260



to top

>dbj|AP000442.6| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-60A24, complete
             sequence
          Length = 117502

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 279   acaacaacaaacaattcgagg 299
             |||||||||||||||||||||
Sbjct: 65520 acaacaacaaacaattcgagg 65540



to top

>gb|AC146030.3| Pan troglodytes BAC clone RP43-124E21 from chromosome 7, complete
            sequence
          Length = 169275

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 246  actgcagggcctcggcacca 265
            ||||||||||||||||||||
Sbjct: 5808 actgcagggcctcggcacca 5827



to top

>gb|AC087726.36| Chlamydomonas reinhardtii clone cr-40a20, complete sequence
          Length = 168794

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    caggcatggctggcgccacg 205
              ||||||||||||||||||||
Sbjct: 120783 caggcatggctggcgccacg 120764



to top

>gb|AC004893.1|AC004893 Homo sapiens PAC clone RP4-808A1 from 7q21.1-q31.1, complete sequence
          Length = 103738

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   actgcagggcctcggcacca 265
             ||||||||||||||||||||
Sbjct: 82297 actgcagggcctcggcacca 82316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,737,993
Number of Sequences: 3902068
Number of extensions: 2737993
Number of successful extensions: 51725
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51686
Number of HSP's gapped (non-prelim): 38
length of query: 397
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 375
effective length of database: 17,147,199,772
effective search space: 6430199914500
effective search space used: 6430199914500
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top