Clone Name | rbart32b04 |
---|---|
Clone Library Name | barley_pub |
>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor| Length = 286 Score = 35.0 bits (79), Expect = 0.11 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Frame = -1 Query: 487 DITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARYEVYPFFFPL-----------D 341 D+ C CV A E+ C R + Y SCM RY F L D Sbjct: 88 DVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFLSTLETKPNTYWSSDD 147 Query: 340 GADKSADEVGQ 308 KS D+ GQ Sbjct: 148 PIPKSYDKFGQ 158
>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor| Length = 287 Score = 32.7 bits (73), Expect = 0.54 Identities = 14/41 (34%), Positives = 17/41 (41%) Frame = -1 Query: 493 TRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 371 T D+ C CV A E+ C R + Y CM RY Sbjct: 89 TGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRY 129
>RT51_ASHGO (Q75B48) Mitochondrial 40S ribosomal protein MRP51 (Mitochondrial| ribosomal protein 51) Length = 360 Score = 32.0 bits (71), Expect = 0.93 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +3 Query: 42 SGFANMKITRWRFARNYIFTSKHVHKQTQGLDSRLATSQPYTNKWIRHHH 191 SGF++ R + + TSK KQ + + ++A +P KW++ HH Sbjct: 124 SGFSSRLSARTPLSSFFGLTSKSDAKQWKAAEKKVAALRPAFKKWLQDHH 173
>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor| Length = 287 Score = 30.4 bits (67), Expect = 2.7 Identities = 13/41 (31%), Positives = 16/41 (39%) Frame = -1 Query: 493 TRDITAADCGLCVAQAVAELPNYCRYRRGCRVIYSSCMARY 371 T D+ C CV A E+ C R + CM RY Sbjct: 85 TGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRY 125
>KAMA_CLOSU (Q9XBQ8) L-lysine 2,3-aminomutase (EC 5.4.3.2) (KAM) (LAM)| Length = 416 Score = 29.3 bits (64), Expect = 6.0 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 5/24 (20%) Frame = -2 Query: 231 LRGHSSSLCVP-----GPGGGGES 175 LRGH+S CVP PGGGG++ Sbjct: 315 LRGHTSGYCVPTFVVDAPGGGGKT 338
>NOTC4_MOUSE (P31695) Neurogenic locus notch homolog protein 4 precursor (Notch 4)| [Contains: Transforming protein Int-3; Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 1964 Score = 29.3 bits (64), Expect = 6.0 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 3/37 (8%) Frame = -2 Query: 255 TCSQ--LRCYLRG-HSSSLCVPGPGGGGESIC*CMAG 154 TCS L C + H+ LC+P P G +C C++G Sbjct: 1079 TCSHKALSCGIHHCHNGGLCLPSPKPGSPPLCACLSG 1115
>NU4M_DIDMA (P41308) NADH-ubiquinone oxidoreductase chain 4 (EC 1.6.5.3) (NADH| dehydrogenase subunit 4) Length = 474 Score = 28.9 bits (63), Expect = 7.8 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%) Frame = -1 Query: 274 CLWSTNY--V*STTVLSTRALQLVVRTWSWWW 185 CL +TNY + S T++ R LQL++ + WW Sbjct: 328 CLANTNYERIHSRTMILARGLQLILPLMTTWW 359
>INO1_SPIPO (P42803) Inositol-3-phosphate synthase (EC 5.5.1.4)| (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) Length = 510 Score = 28.9 bits (63), Expect = 7.8 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 254 VVCTPQTNTSRVQDNLVALSDLVGRLVGAVEREE 355 VV NT R D +V L+D + L+ AVER+E Sbjct: 225 VVVLWTANTERYSDLVVGLNDTMENLLAAVERDE 258 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,184,016 Number of Sequences: 219361 Number of extensions: 1311867 Number of successful extensions: 4585 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 4241 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4574 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3478785780 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)