ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbart32b03 |
|---|---|
| Clone Library Name | barley_pub |
>ABCA2_MOUSE (P41234) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 32.3 bits (72), Expect = 0.87 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -2 Query: 341 GSSNITSVSPNAGSHVAVSNQSRPTSSADGPTLSLKAACSSAVVIWAGASLML 183 G +N T + N+GS+ V ++ S P +L+ CS+ V +WAG +L Sbjct: 365 GLANSTGIGANSGSNTTVEEGTQSPVSPASPD-TLQGQCSAFVQLWAGLQPIL 416
>NDST2_HUMAN (P52849) Bifunctional heparan sulfate| N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8) (Glucosaminyl N-deacetylase/N-sulfotransferase 2) (NDST-2) (N-heparan sulfate sulfotransferase 2) (N-HSST 2) [Includes: Heparan sulfate N-deacetylase 2 (EC Length = 883 Score = 30.8 bits (68), Expect = 2.5 Identities = 15/29 (51%), Positives = 17/29 (58%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRG 221 L PA T S P PS EE Q SP +H+G Sbjct: 625 LHPAVTSSFPSPSTFEEIQFFNSPNYHKG 653
>TMM25_MOUSE (Q9DCF1) Transmembrane protein 25 precursor| Length = 365 Score = 30.8 bits (68), Expect = 2.5 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = -1 Query: 339 QQQHHQCFTQCRLARGGQQPESADQQRGRAHSQPQGRLLLRGGDMGWRVADALLGLTETA 160 ++ H FT CR+A G P A G+ RLL GG DA G T T Sbjct: 43 RENEHHAFT-CRVAGGSATPRLAWYLDGQLQEATTSRLLSVGG-------DAFSGGTSTF 94 Query: 159 TSTLRRA 139 T T +R+ Sbjct: 95 TVTAQRS 101
>FLP_YEAST (P03870) Recombinase Flp protein (Protein Able)| Length = 423 Score = 30.4 bits (67), Expect = 3.3 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Frame = -1 Query: 336 QQHHQCFTQCRLARGGQQPESADQQRGRAHSQPQGRLLLRGGDMGWRVADALLGLTE-TA 160 Q+H T + Q S + +G +HS+ + LL G+ W + + +L E T+ Sbjct: 110 QKHQSDITDIVSSLQLQFESSEEADKGNSHSKKMLKALLSEGESIWEITEKILNSFEYTS 169 Query: 159 TSTLRRAVIWFLFRMT 112 T + + FLF T Sbjct: 170 RFTKTKTLYQFLFLAT 185
>ABCA2_RAT (Q9ESR9) ATP-binding cassette sub-family A member 2 (ATP-binding| cassette transporter 2) (ATP-binding cassette 2) Length = 2434 Score = 29.6 bits (65), Expect = 5.6 Identities = 16/53 (30%), Positives = 26/53 (49%) Frame = -2 Query: 341 GSSNITSVSPNAGSHVAVSNQSRPTSSADGPTLSLKAACSSAVVIWAGASLML 183 G +N T V N G + V ++ + P +L+ CS+ V +WAG +L Sbjct: 365 GPANSTGVGANTGPNTTVEEGTQSPVTPASPD-TLQGQCSAFVQLWAGLQPIL 416
>NDST2_MOUSE (P52850) Bifunctional heparan sulfate| N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8) (Glucosaminyl N-deacetylase/N-sulfotransferase 2) (NDST-2) (N-heparan sulfate sulfotransferase 2) (N-HSST 2) (Mndns) [Includes: Heparan sulfate N-deacetylas Length = 883 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRG 221 L PA T S P PS EE Q P +H+G Sbjct: 625 LHPAVTSSFPSPSTFEEIQFFNGPNYHKG 653
>NDST2_BOVIN (O97583) Bifunctional heparan sulfate| N-deacetylase/N-sulfotransferase 2 (EC 2.8.2.8) (Glucosaminyl N-deacetylase/N-sulfotransferase 2) (NDST-2) (CCL44) [Includes: Heparan sulfate N-deacetylase 2 (EC 3.-.-.-); Heparan sulfate N-sulfotransfera Length = 884 Score = 29.3 bits (64), Expect = 7.4 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRG 221 L PA T S P PS EE Q P +H+G Sbjct: 626 LHPAVTSSFPSPSTFEEIQFFNGPNYHKG 654
>RBF1_CAEEL (P41885) Rabphilin-1| Length = 1106 Score = 28.9 bits (63), Expect = 9.6 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +3 Query: 81 ADGGKINASSMSSGKETILQPAATCSSPFPSNLEEHQRRASPYHHRGGAGGLEAESGPVR 260 AD I++ + S Q TCSS S+L Q++AS HH GG G S P R Sbjct: 579 ADTRSIDSGVVQSDHSNPQQSGLTCSS---SSLTPLQQQASHDHHSGG-GTPRRISNPDR 634 Query: 261 AAGR 272 R Sbjct: 635 TTSR 638
>HNF6_RAT (P70512) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRGGAGGL 236 L P +T S FP + H P+HH+ AG + Sbjct: 112 LPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNV 145
>HNF6_MOUSE (O08755) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRGGAGGL 236 L P +T S FP + H P+HH+ AG + Sbjct: 112 LPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNV 145
>HNF6_HUMAN (Q9UBC0) Hepatocyte nuclear factor 6 (HNF-6) (One cut domain family| member 1) Length = 465 Score = 28.9 bits (63), Expect = 9.6 Identities = 12/34 (35%), Positives = 17/34 (50%) Frame = +3 Query: 135 LQPAATCSSPFPSNLEEHQRRASPYHHRGGAGGL 236 L P +T S FP + H P+HH+ AG + Sbjct: 112 LPPISTVSDKFPHHHHHHHHHHHPHHHQRLAGNV 145
>LGR5_HUMAN (O75473) Leucine-rich repeat-containing G-protein coupled receptor| 5 precursor (Orphan G-protein coupled receptor HG38) (G-protein coupled receptor 49) (G-protein coupled receptor 67) Length = 907 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 3/33 (9%) Frame = -1 Query: 306 RLARGGQQPESADQQRG---RAHSQPQGRLLLR 217 +LA GG P S RG H +P GR+LLR Sbjct: 17 QLATGGSSPRSGVLLRGCPTHCHCEPDGRMLLR 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,503,927 Number of Sequences: 219361 Number of extensions: 961534 Number of successful extensions: 3643 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 3455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3637 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
