ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens... 31 0.89
2ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens... 28 4.4
3GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DN... 28 5.8
4COQ4_HUMAN (Q9Y3A0) Ubiquinone biosynthesis protein COQ4 homolog... 27 9.8
5ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disint... 27 9.8
6FEP1_SCHPO (Q10134) Iron-sensing transcription factor 1 (Transcr... 27 9.8

>ZO1_HUMAN (Q07157) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1748

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 205 HRPVSIEESTFERNERLVFGIPNPKTRRPCYCEL 104
           H P ++EE T ERNE+    +P PK   P Y ++
Sbjct: 362 HTPKTVEEVTVERNEKQTPSLPEPK---PVYAQV 392



to top

>ZO1_MOUSE (P39447) Tight junction protein ZO-1 (Zonula occludens 1 protein)|
           (Zona occludens 1 protein) (Tight junction protein 1)
          Length = 1745

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 205 HRPVSIEESTFERNERLVFGIPNPKTRRPCYCEL 104
           H P ++EE T E+NE+    +P PK   P Y ++
Sbjct: 362 HPPKAVEEVTVEKNEKQTPTLPEPK---PVYAQV 392



to top

>GLI3_XENLA (Q91660) Zinc finger protein GLI3 (Neural-specific DNA-binding|
           protein xGLI3) (xGLI-3)
          Length = 1569

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
 Frame = -3

Query: 291 PAAWAPVAQDVDHH----HQEMSPFPVTHVAVTIDPSP 190
           PA   PV  D  HH    H E +P P  HV   +  SP
Sbjct: 130 PAFHPPVPIDARHHEGRYHYEPTPIPPLHVPTALASSP 167



to top

>COQ4_HUMAN (Q9Y3A0) Ubiquinone biosynthesis protein COQ4 homolog (Coenzyme Q|
           biosynthesis protein 4 homolog)
          Length = 265

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = -3

Query: 312 GVPGLRRPAAWAPVAQDVDHHHQEMSPFPVTHVAVTIDPSPLKKVLLRGMNA*FLAFPTR 133
           G+PGL+RPAA  P+    D       P    H    +  SPL+K LL   +A    +   
Sbjct: 14  GLPGLQRPAAEMPLRARSD----GAGPLYSHH----LPTSPLQKALLAAGSAAMALYNPY 65

Query: 132 KQDALATV 109
           + D +A +
Sbjct: 66  RHDMVAVL 73



to top

>ATS19_HUMAN (Q8TE59) ADAMTS-19 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase with thrombospondin motifs 19)
           (ADAM-TS 19) (ADAM-TS19)
          Length = 1207

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 130 FSGWECQKLSVH-SSQKYFLQW 192
           F  W+CQ  SV  SS K+ LQW
Sbjct: 692 FRDWQCQAYSVRTSSPKHILQW 713



to top

>FEP1_SCHPO (Q10134) Iron-sensing transcription factor 1 (Transcription factor|
           gaf2) (Gaf-2)
          Length = 564

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = -2

Query: 211 GYHRPVSIEESTFERNERLVF 149
           G HRPV+++++  +R +RLVF
Sbjct: 204 GVHRPVTMKKAIIKRRKRLVF 224


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,021,090
Number of Sequences: 219361
Number of extensions: 831172
Number of successful extensions: 1717
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top