ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbart32b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, com... 44 0.27
2gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, com... 44 0.27
3dbj|AB208914.1| Homo sapiens mRNA for 1-phosphatidylinositol-4,5... 44 0.27
4gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome ... 44 0.27
5gb|BT017918.1| Zea mays clone EL01N0518H09.c mRNA sequence 42 1.1
6gb|AY377288.1| Hydrurga leptonyx L2677 12S ribosomal RNA gene, p... 42 1.1
7gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, co... 42 1.1
8gb|BC007565.1| Homo sapiens phospholipase C, gamma 2 (phosphatid... 42 1.1
9gb|BC011772.2| Homo sapiens phospholipase C, gamma 2 (phosphatid... 42 1.1
10gb|BC018646.2| Homo sapiens phospholipase C, gamma 2 (phosphatid... 42 1.1
11gb|BC014561.2| Homo sapiens phospholipase C, gamma 2 (phosphatid... 42 1.1
12gb|AF236368.1| Zea mays variety B73 prohibitin (PHB1) mRNA, comp... 42 1.1
13gb|AY138246.1| Gallus gallus p15INK4b tumor suppressor and ARF t... 42 1.1
14gb|AY109482.1| Zea mays CL123_1 mRNA sequence 42 1.1
15ref|XM_477318.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.3
16ref|XM_506251.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 4.3
17gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, co... 40 4.3
18gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complet... 40 4.3
19emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, comple... 40 4.3
20ref|NM_069387.3| Caenorhabditis elegans Dauer Up-Regulated famil... 40 4.3
21ref|NM_069385.3| Caenorhabditis elegans Dauer Up-Regulated famil... 40 4.3
22ref|NM_069386.3| Caenorhabditis elegans Dauer Up-Regulated famil... 40 4.3
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
24dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
25dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 4.3
26dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
27dbj|AK104133.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
28dbj|AK071615.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.3
29gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.10... 40 4.3

>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence
          Length = 164925

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 273   ctggagcccaagcagcagggcg 294
             ||||||||||||||||||||||
Sbjct: 12419 ctggagcccaagcagcagggcg 12398



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>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence
          Length = 177306

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 273    ctggagcccaagcagcagggcg 294
              ||||||||||||||||||||||
Sbjct: 167225 ctggagcccaagcagcagggcg 167204



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>dbj|AB208914.1| Homo sapiens mRNA for 1-phosphatidylinositol-4,5-bisphosphate
            phosphodiesterase gamma 2 variant protein
          Length = 4263

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 273  ctggagcccaagcagcagggcg 294
            ||||||||||||||||||||||
Sbjct: 2796 ctggagcccaagcagcagggcg 2817



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>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence
          Length = 264591

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 247    gtggtggtggtcaacatcttga 268
              ||||||||||||||||||||||
Sbjct: 148061 gtggtggtggtcaacatcttga 148040



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>gb|BT017918.1| Zea mays clone EL01N0518H09.c mRNA sequence
          Length = 1187

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 298 gagtccaggaacaccttgttg 318
           |||||||||||||||||||||
Sbjct: 837 gagtccaggaacaccttgttg 817



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>gb|AY377288.1| Hydrurga leptonyx L2677 12S ribosomal RNA gene, partial sequence;
           mitochondrial gene for mitochondrial product
          Length = 964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 16  agcataataatcaccacataa 36
           |||||||||||||||||||||
Sbjct: 662 agcataataatcaccacataa 682



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>gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, complete sequence
          Length = 177979

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 222   tgacaggaaacgggctcattt 242
             |||||||||||||||||||||
Sbjct: 14250 tgacaggaaacgggctcattt 14230



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>gb|BC007565.1| Homo sapiens phospholipase C, gamma 2
            (phosphatidylinositol-specific), mRNA (cDNA clone
            MGC:15492 IMAGE:2989125), complete cds
          Length = 4258

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  ctggagcccaagcagcagggc 293
            |||||||||||||||||||||
Sbjct: 2773 ctggagcccaagcagcagggc 2793



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>gb|BC011772.2| Homo sapiens phospholipase C, gamma 2
            (phosphatidylinositol-specific), mRNA (cDNA clone
            MGC:19776 IMAGE:3678272), complete cds
          Length = 4258

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  ctggagcccaagcagcagggc 293
            |||||||||||||||||||||
Sbjct: 2773 ctggagcccaagcagcagggc 2793



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>gb|BC018646.2| Homo sapiens phospholipase C, gamma 2
            (phosphatidylinositol-specific), mRNA (cDNA clone
            MGC:1680 IMAGE:2989389), complete cds
          Length = 4258

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  ctggagcccaagcagcagggc 293
            |||||||||||||||||||||
Sbjct: 2773 ctggagcccaagcagcagggc 2793



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>gb|BC014561.2| Homo sapiens phospholipase C, gamma 2
            (phosphatidylinositol-specific), mRNA (cDNA clone
            MGC:1679 IMAGE:2989281), complete cds
          Length = 4258

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  ctggagcccaagcagcagggc 293
            |||||||||||||||||||||
Sbjct: 2773 ctggagcccaagcagcagggc 2793



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>gb|AF236368.1| Zea mays variety B73 prohibitin (PHB1) mRNA, complete cds
          Length = 1323

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  gagtccaggaacaccttgttg 318
            |||||||||||||||||||||
Sbjct: 1026 gagtccaggaacaccttgttg 1006



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>gb|AY138246.1| Gallus gallus p15INK4b tumor suppressor and ARF tumor suppressor
           genes, complete cds
          Length = 18365

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 215 acgtgcgtgacaggaaacggg 235
           |||||||||||||||||||||
Sbjct: 910 acgtgcgtgacaggaaacggg 930



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>gb|AY109482.1| Zea mays CL123_1 mRNA sequence
          Length = 2096

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 298  gagtccaggaacaccttgttg 318
            |||||||||||||||||||||
Sbjct: 1031 gagtccaggaacaccttgttg 1011



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>ref|XM_477318.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1145

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gagtccaggaacaccttgtt 317
           ||||||||||||||||||||
Sbjct: 908 gagtccaggaacaccttgtt 889



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>ref|XM_506251.1| PREDICTED Oryza sativa (japonica cultivar-group), P0046D03.133 mRNA
          Length = 1209

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gagtccaggaacaccttgtt 317
           ||||||||||||||||||||
Sbjct: 909 gagtccaggaacaccttgtt 890



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>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence
          Length = 144770

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    tgcacaaacagttcacagtagcaa 119
             |||||||||||||||| |||||||
Sbjct: 99203 tgcacaaacagttcactgtagcaa 99180



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>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 267     gagcgactggagcccaagca 286
               ||||||||||||||||||||
Sbjct: 2105810 gagcgactggagcccaagca 2105829



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>emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, complete sequence
          Length = 32589

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 239   atttcttggtggtggtggtc 258
             ||||||||||||||||||||
Sbjct: 20939 atttcttggtggtggtggtc 20958



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>ref|NM_069387.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1)
           (dur-1) mRNA, complete cds
          Length = 1332

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 atttcttggtggtggtggtc 258
           ||||||||||||||||||||
Sbjct: 298 atttcttggtggtggtggtc 279



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>ref|NM_069385.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1)
           (dur-1) mRNA, complete cds
          Length = 2390

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 atttcttggtggtggtggtc 258
           ||||||||||||||||||||
Sbjct: 298 atttcttggtggtggtggtc 279



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>ref|NM_069386.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1)
           (dur-1) mRNA, complete cds
          Length = 2452

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 239 atttcttggtggtggtggtc 258
           ||||||||||||||||||||
Sbjct: 298 atttcttggtggtggtggtc 279



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 298     gagtccaggaacaccttgtt 317
               ||||||||||||||||||||
Sbjct: 9253994 gagtccaggaacaccttgtt 9254013



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>dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0483E06
          Length = 159035

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 298   gagtccaggaacaccttgtt 317
             ||||||||||||||||||||
Sbjct: 16838 gagtccaggaacaccttgtt 16857



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>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     ttgggaatgccaaaaactaa 157
               ||||||||||||||||||||
Sbjct: 2583920 ttgggaatgccaaaaactaa 2583939



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>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0046D03
          Length = 150554

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 298    gagtccaggaacaccttgtt 317
              ||||||||||||||||||||
Sbjct: 136867 gagtccaggaacaccttgtt 136886



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>dbj|AK104133.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E01, full
           insert sequence
          Length = 1145

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gagtccaggaacaccttgtt 317
           ||||||||||||||||||||
Sbjct: 908 gagtccaggaacaccttgtt 889



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>dbj|AK071615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D05, full
           insert sequence
          Length = 1209

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 gagtccaggaacaccttgtt 317
           ||||||||||||||||||||
Sbjct: 909 gagtccaggaacaccttgtt 890



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>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence
          Length = 205150

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 138   ttgggaatgccaaaaactaa 157
             ||||||||||||||||||||
Sbjct: 47760 ttgggaatgccaaaaactaa 47779


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,766,196
Number of Sequences: 3902068
Number of extensions: 2766196
Number of successful extensions: 59920
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59852
Number of HSP's gapped (non-prelim): 68
length of query: 323
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 301
effective length of database: 17,147,199,772
effective search space: 5161307131372
effective search space used: 5161307131372
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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