Clone Name | rbart32b01 |
---|---|
Clone Library Name | barley_pub |
>gb|AC098966.3| Homo sapiens chromosome 16 clone RP11-465H19, complete sequence Length = 164925 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 ctggagcccaagcagcagggcg 294 |||||||||||||||||||||| Sbjct: 12419 ctggagcccaagcagcagggcg 12398
>gb|AC092142.5| Homo sapiens chromosome 16 clone RP11-510J16, complete sequence Length = 177306 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 273 ctggagcccaagcagcagggcg 294 |||||||||||||||||||||| Sbjct: 167225 ctggagcccaagcagcagggcg 167204
>dbj|AB208914.1| Homo sapiens mRNA for 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 2 variant protein Length = 4263 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 273 ctggagcccaagcagcagggcg 294 |||||||||||||||||||||| Sbjct: 2796 ctggagcccaagcagcagggcg 2817
>gb|AC166175.2| Mus musculus BAC clone RP23-53H1 from chromosome 9, complete sequence Length = 264591 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 247 gtggtggtggtcaacatcttga 268 |||||||||||||||||||||| Sbjct: 148061 gtggtggtggtcaacatcttga 148040
>gb|BT017918.1| Zea mays clone EL01N0518H09.c mRNA sequence Length = 1187 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgttg 318 ||||||||||||||||||||| Sbjct: 837 gagtccaggaacaccttgttg 817
>gb|AY377288.1| Hydrurga leptonyx L2677 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product Length = 964 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 agcataataatcaccacataa 36 ||||||||||||||||||||| Sbjct: 662 agcataataatcaccacataa 682
>gb|AC124826.8| Mus musculus chromosome 12, clone RP23-455F18, complete sequence Length = 177979 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 222 tgacaggaaacgggctcattt 242 ||||||||||||||||||||| Sbjct: 14250 tgacaggaaacgggctcattt 14230
>gb|BC007565.1| Homo sapiens phospholipase C, gamma 2 (phosphatidylinositol-specific), mRNA (cDNA clone MGC:15492 IMAGE:2989125), complete cds Length = 4258 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctggagcccaagcagcagggc 293 ||||||||||||||||||||| Sbjct: 2773 ctggagcccaagcagcagggc 2793
>gb|BC011772.2| Homo sapiens phospholipase C, gamma 2 (phosphatidylinositol-specific), mRNA (cDNA clone MGC:19776 IMAGE:3678272), complete cds Length = 4258 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctggagcccaagcagcagggc 293 ||||||||||||||||||||| Sbjct: 2773 ctggagcccaagcagcagggc 2793
>gb|BC018646.2| Homo sapiens phospholipase C, gamma 2 (phosphatidylinositol-specific), mRNA (cDNA clone MGC:1680 IMAGE:2989389), complete cds Length = 4258 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctggagcccaagcagcagggc 293 ||||||||||||||||||||| Sbjct: 2773 ctggagcccaagcagcagggc 2793
>gb|BC014561.2| Homo sapiens phospholipase C, gamma 2 (phosphatidylinositol-specific), mRNA (cDNA clone MGC:1679 IMAGE:2989281), complete cds Length = 4258 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ctggagcccaagcagcagggc 293 ||||||||||||||||||||| Sbjct: 2773 ctggagcccaagcagcagggc 2793
>gb|AF236368.1| Zea mays variety B73 prohibitin (PHB1) mRNA, complete cds Length = 1323 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgttg 318 ||||||||||||||||||||| Sbjct: 1026 gagtccaggaacaccttgttg 1006
>gb|AY138246.1| Gallus gallus p15INK4b tumor suppressor and ARF tumor suppressor genes, complete cds Length = 18365 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 acgtgcgtgacaggaaacggg 235 ||||||||||||||||||||| Sbjct: 910 acgtgcgtgacaggaaacggg 930
>gb|AY109482.1| Zea mays CL123_1 mRNA sequence Length = 2096 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgttg 318 ||||||||||||||||||||| Sbjct: 1031 gagtccaggaacaccttgttg 1011
>ref|XM_477318.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1145 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 908 gagtccaggaacaccttgtt 889
>ref|XM_506251.1| PREDICTED Oryza sativa (japonica cultivar-group), P0046D03.133 mRNA Length = 1209 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 909 gagtccaggaacaccttgtt 890
>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence Length = 144770 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 tgcacaaacagttcacagtagcaa 119 |||||||||||||||| ||||||| Sbjct: 99203 tgcacaaacagttcactgtagcaa 99180
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 gagcgactggagcccaagca 286 |||||||||||||||||||| Sbjct: 2105810 gagcgactggagcccaagca 2105829
>emb|Z69360.1|CEF25H8 Caenorhabditis elegans Cosmid F25H8, complete sequence Length = 32589 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 239 atttcttggtggtggtggtc 258 |||||||||||||||||||| Sbjct: 20939 atttcttggtggtggtggtc 20958
>ref|NM_069387.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds Length = 1332 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 atttcttggtggtggtggtc 258 |||||||||||||||||||| Sbjct: 298 atttcttggtggtggtggtc 279
>ref|NM_069385.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds Length = 2390 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 atttcttggtggtggtggtc 258 |||||||||||||||||||| Sbjct: 298 atttcttggtggtggtggtc 279
>ref|NM_069386.3| Caenorhabditis elegans Dauer Up-Regulated family member (dur-1) (dur-1) mRNA, complete cds Length = 2452 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 atttcttggtggtggtggtc 258 |||||||||||||||||||| Sbjct: 298 atttcttggtggtggtggtc 279
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 9253994 gagtccaggaacaccttgtt 9254013
>dbj|AP004304.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0483E06 Length = 159035 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 16838 gagtccaggaacaccttgtt 16857
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttgggaatgccaaaaactaa 157 |||||||||||||||||||| Sbjct: 2583920 ttgggaatgccaaaaactaa 2583939
>dbj|AP005307.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0046D03 Length = 150554 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 136867 gagtccaggaacaccttgtt 136886
>dbj|AK104133.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-E01, full insert sequence Length = 1145 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 908 gagtccaggaacaccttgtt 889
>dbj|AK071615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023105D05, full insert sequence Length = 1209 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 298 gagtccaggaacaccttgtt 317 |||||||||||||||||||| Sbjct: 909 gagtccaggaacaccttgtt 890
>gb|AC005274.1|AC005274 Homo sapiens chromosome 17, clone hRPK.1090_M_7, complete sequence Length = 205150 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 ttgggaatgccaaaaactaa 157 |||||||||||||||||||| Sbjct: 47760 ttgggaatgccaaaaactaa 47779 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,766,196 Number of Sequences: 3902068 Number of extensions: 2766196 Number of successful extensions: 59920 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59852 Number of HSP's gapped (non-prelim): 68 length of query: 323 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 301 effective length of database: 17,147,199,772 effective search space: 5161307131372 effective search space used: 5161307131372 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)